LOCUS       NM_001398834            2149 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ELMO domain containing 3 (Elmod3), transcript
            variant 1, mRNA.
ACCESSION   NM_001398834 XM_006236667
VERSION     NM_001398834.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2149)
  AUTHORS   Bowzard,J.B., Cheng,D., Peng,J. and Kahn,R.A.
  TITLE     ELMOD2 is an Arl2 GTPase-activating protein that also acts on Arfs
  JOURNAL   J Biol Chem 282 (24), 17568-17580 (2007)
   PUBMED   17452337
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 27, 2021 this sequence version replaced XM_006236667.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643284.6209.1,
                                           SRR26360194.855085.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-73                JAXUCZ010000004.1  106211157-106211229 c
            74-353              JAXUCZ010000004.1  106208000-106208279 c
            354-428             JAXUCZ010000004.1  106199058-106199132 c
            429-498             JAXUCZ010000004.1  106197902-106197971 c
            499-567             JAXUCZ010000004.1  106191345-106191413 c
            568-659             JAXUCZ010000004.1  106190683-106190774 c
            660-783             JAXUCZ010000004.1  106188351-106188474 c
            784-906             JAXUCZ010000004.1  106187977-106188099 c
            907-1037            JAXUCZ010000004.1  106185468-106185598 c
            1038-1114           JAXUCZ010000004.1  106175718-106175794 c
            1115-1242           JAXUCZ010000004.1  106175253-106175380 c
            1243-2149           JAXUCZ010000004.1  106172828-106173734 c
FEATURES             Location/Qualifiers
     source          1..2149
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q32"
     gene            1..2149
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /note="ELMO domain containing 3"
                     /db_xref="GeneID:297342"
                     /db_xref="RGD:1306408"
     exon            1..73
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            74..353
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     CDS             300..1445
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /note="isoform 1 is encoded by transcript variant 1; ELMO
                     domain-containing protein 3; RNA-binding motif and ELMO
                     domain-containing protein 1; potassium channel modulatory
                     factor 1; RNA binding motif and ELMO domain 1; ELMO/CED-12
                     domain containing 3"
                     /codon_start=1
                     /product="ELMO domain-containing protein 3 isoform 1"
                     /protein_id="NP_001385763.1"
                     /db_xref="GeneID:297342"
                     /db_xref="RGD:1306408"
                     /translation="MSETSCSFLIEKEFQDGQVESVSAGLSPSYKDNGALMAFRGIPI
                     SELKNHGILQVLTAETNGWQPGVVSAEMLRAQEEWEVVDTIHPDIESGVSSQQPGQFI
                     SFNEALEHFQTVDLSSFKKRIQPTIQRTGLAALRHCLFGPPKLHQGLQEERDLVLTIA
                     QCGLDSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGTGFLAL
                     LHLLYLVMDSKTLLMAQEILRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNR
                     RRKVIPVVNSFYAATFLHLARMWRTQHNTILDSGFVLKDLEALAKKKPRRLLKTLDNY
                     LAQLSKGQASLLEAQKCPGSQGPHSKDLTFIGVCDLPSHSFESTGLI"
     exon            354..428
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            429..498
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            499..567
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            568..659
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            660..783
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            784..906
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1037
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            1038..1114
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1242
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..2149
                     /gene="Elmod3"
                     /gene_synonym="Kcmf1; Rbed1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acaagcggca cttcacgcct gcgcgatgag ggggatgtgg gaccctctta ccggaacgct
       61 ggggacgcgt ccgagtgagg ctccgaggtt cccaggggct ttcaggactc acagagacct
      121 tctgcacctt ggtgatggcc caaggggact gttttcttcc ttggaacctg aatgactgcc
      181 aagaaggaag acgaaagtag agtgcttgtc tctcctggtg gctccaggcc tcaggctgtc
      241 ctatcgaacc cctttcagag ctcaaggaca aggctcactt caactagtga gcttgagtca
      301 tgagtgaaac atcttgctct ttccttatcg agaaagaatt tcaagatgga caggtagaaa
      361 gtgtctctgc tgggctctcg ccatcataca aggacaatgg tgcactcatg gctttcagag
      421 gaattcctat ctcagagctg aagaaccatg gcattctcca ggtcctgaca gcagaaacta
      481 acggatggca gccaggtgtt gtgagtgcag agatgctccg agcccaggaa gaatgggagg
      541 tggtagacac catccatcca gacatagaga gtggggtcag ctcccagcag cctggccagt
      601 tcatctcctt caacgaggcc ctggagcact tccagactgt ggacctctcc tctttcaaga
      661 aaagaatcca gccgactatt caaaggactg ggctcgctgc cctccggcat tgcctcttcg
      721 ggccaccaaa gctgcaccag ggtcttcagg aagaaagaga cttggttctc accattgctc
      781 aatgtggcct ggacagccaa aacccaacgc atggccgagt gctccagacc atctacaaga
      841 agctgactgg ctccaagttc gactgtgccc tgcacggaga ccattgggaa gacctgggct
      901 tccagggagc aaatccagcc acagacctca ggggaacagg tttcctggcc ctcctgcacc
      961 tcctgtacct ggtcatggac tctaagactt tgctgatggc gcaggagatc ttacgcctat
     1021 ctcatcacca tatccagcaa ttccccttct gtttgatgtc tgtgaacatc acccgcattg
     1081 ccatccaggc cttgagggaa gagtgtctct ccagggaatg taaccgtcgg cggaaggtca
     1141 tcccagtggt gaacagcttc tacgcagcta ctttccttca cctggcacga atgtggagga
     1201 cccagcataa cactatttta gactcaggct ttgtcctcaa agatttggaa gcattggcta
     1261 agaagaagcc aagacgactg ctcaagaccc tggacaacta cctagcccag ttgtcaaagg
     1321 gacaggcctc cttattggag gcccagaagt gccctggatc acagggacct cactccaagg
     1381 atctcacttt cattggcgtg tgtgacctac cgtctcattc attcgagagt acagggttga
     1441 tctgaccacc acagagacca ttcctagaaa ggcaggctgg gttgctggaa ctttctgaac
     1501 taaagaacca tatctaggcc aaagcccttc atgcctctgc aggtgggatt aggatgctcc
     1561 caggtgtggg tagtgacacc cacaattcta caccagcata gcacattcag gcagctagga
     1621 ttaccctcca tgccatcttc gaagcacttt ctgtcattcc cagctgggtt ccagttcaca
     1681 gggtggactc cagatatctc agtggaagtg agcagacggc cctatctgaa ctgtctacac
     1741 atctgcacct agagggagag accctggaag caacagctaa gattctgact ccccaacagc
     1801 agtccccagc ctgtgattgg aattggaaga aaagatggca ctatcttcag ccagcagggg
     1861 gcagcacaac acagaaaaag tgactgactt tataggcagg cctcttcctc cagccactgt
     1921 ttccaagaca cctgttccca ccccaccctt ctcctctttc ccctccctct ctgttgccca
     1981 ccattgtttg taatctagaa atgaacactc agctggctag attcgagcac cccatcccca
     2041 ccgcccaggg gctggagctc ctgtgaagac cattggttat ctagcctgcc tgagaggcaa
     2101 gttaactcac tcacccacca gcagttttag aataaaggga ttgtggtaa
//
