LOCUS       NM_001191579            2471 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus ELMO domain containing 1 (Elmod1), mRNA.
ACCESSION   NM_001191579 XM_002729923
VERSION     NM_001191579.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Hasson,S.A., Kane,L.A., Yamano,K., Huang,C.H., Sliter,D.A.,
            Buehler,E., Wang,C., Heman-Ackah,S.M., Hessa,T., Guha,R.,
            Martin,S.E. and Youle,R.J.
  TITLE     High-content genome-wide RNAi screens identify regulators of parkin
            upstream of mitophagy
  JOURNAL   Nature 504 (7479), 291-295 (2013)
   PUBMED   24270810
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Bowzard,J.B., Cheng,D., Peng,J. and Kahn,R.A.
  TITLE     ELMOD2 is an Arl2 GTPase-activating protein that also acts on Arfs
  JOURNAL   J Biol Chem 282 (24), 17568-17580 (2007)
   PUBMED   17452337
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            [WARNING] On Apr 12, 2024 this sequence was replaced by
            NM_001191579.2.
            
            On Jul 17, 2010 this sequence version replaced XM_002729923.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1706814.1,
                                           SRR26360172.2461073.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               JAXUCZ010000008.1  63251214-63251322   c
            110-210             JAXUCZ010000008.1  63230714-63230814   c
            211-356             JAXUCZ010000008.1  63218772-63218917   c
            357-385             JAXUCZ010000008.1  63218610-63218638   c
            386-483             JAXUCZ010000008.1  63217137-63217234   c
            484-613             JAXUCZ010000008.1  63214786-63214915   c
            614-747             JAXUCZ010000008.1  63209366-63209499   c
            748-816             JAXUCZ010000008.1  63207796-63207864   c
            817-840             JAXUCZ010000008.1  63207339-63207362   c
            841-891             JAXUCZ010000008.1  63204462-63204512   c
            892-1025            JAXUCZ010000008.1  63203156-63203289   c
            1026-2471           JAXUCZ010000008.1  63194539-63195984   c
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2471
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /note="ELMO domain containing 1"
                     /db_xref="GeneID:315670"
                     /db_xref="RGD:1564186"
     exon            1..109
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            110..210
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     CDS             194..1198
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /note="ELMO/CED-12 domain containing 1"
                     /codon_start=1
                     /product="ELMO domain-containing protein 1"
                     /protein_id="NP_001178508.1"
                     /db_xref="GeneID:315670"
                     /db_xref="RGD:1564186"
                     /translation="MKHFLRMLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYGT
                     KPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKKINPDINPQLGISL
                     QACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWEFLKPNTPLESRISKQWC
                     EIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLCDSVHPKCRDITKEEISKF
                     SKTEWEKKKMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQT
                     FCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM
                     "
     exon            211..356
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            357..385
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            386..483
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            484..613
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            614..747
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            748..816
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            817..840
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            841..891
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            892..1025
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
     exon            1026..2471
                     /gene="Elmod1"
                     /gene_synonym="RGD1564186"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accagccgcg gcgatcacgg tcgctagtgc gtagcagaag cgaaggcgga gatggagacc
       61 acgctgtcgc gatcccagaa ctgctgagcc cactgctgtc cctgacccgc tcacacttcc
      121 tttgcaaaag caaatttgga agcagttgct tgaagacagt tggtgtagcg tccagagagt
      181 caacgtcggc acaatgaagc acttcctgag gatgttgatc caggtgtgcc tctatttcta
      241 ctgtaaattt ttgtggcgct gcatgaagtt tgtgatgcgt aagctcacgg gaaggtgtga
      301 gctgcaaagg atttgctacg gcaccaaacc cggagcttcc agaaccatga aaattgaaac
      361 gtcactgaga gattcaaaaa gcaagctgtt gcagacatca gtgagtgttc atcctgatgc
      421 tatcgaaaag actattgatg acatcatgga attgaaaaaa attaaccctg acatcaatcc
      481 acagttggga atctctctcc aggcttgcct tctgcaaatt gtgggttaca gaaacctcat
      541 tgcagatgtg gaaaaactgc gcagagaacc ctacgattcc gacaaccccc agcatgaaga
      601 gatgcttctg aagctatggg agttcctgaa gcccaacact ccactggagt ctcggatttc
      661 taagcagtgg tgtgagattg gcttccaagg tgatgatccg aaaacagatt ttcgaggaat
      721 gggtcttctg ggactttaca atttgcaata tttcgcagaa cgggatgcca cggtagctca
      781 gcaagttctg tgtgactctg ttcatccaaa atgcagggat atcactaagg aggaaataag
      841 caaattcagc aaaacagaat gggaaaagaa aaagatggat aaagcaattg ggtactcctt
      901 tgcaatcgtg ggcatcaata tcaccgacct ggcatataat ctgctcgtga gcggcgctct
      961 gaaaacacat ttctacaaca tcgctcccga agctccaaca ctgtctcact tccagcaaac
     1021 attctgctat ttgatgcacg agtttcacaa gttttggatt gaagaggacc ccatggacat
     1081 aatggaattt aaccgcgtgc gggagaaatt ccgcaagaga atcataaaac agctgcagaa
     1141 cccagacatg gcgctgtgcc cacatttcgc tgcctctgaa ggtttaatca acatgtagtg
     1201 cccacactgg tttcaatgga tacccctgaa cactgcctca ttgtcatctt agatctctgc
     1261 ttaggtgaca gctcacacac ctaatgcaca taagtgatta tatatatata tatatatata
     1321 tatatatata tatatgcatg ccttttggta cagtattttc atctcttggt cattattcca
     1381 agatcccccc aaatatcacc attctggagt gtccgccctc cagcgactgc tcacattgtg
     1441 gcatcctgca gtgttgacat ctgtccttgg cacccaggtt tgaagaaagt tttctatttt
     1501 tttagatttt tttctctccc cccccccatc attcaaatat taaaaacgtg tgataatttc
     1561 ttagctgtaa tttgtacgta agagagttag ctgaatctca ttccgtgttc atatttatta
     1621 aaaaaaaaag tttcacgaag actgctgcta gcctctcaag aagggcttgt gcttggacct
     1681 cacccgggta atgtataaga cttgaaagtc atacagacgc gtgagaagcc aaactcttcc
     1741 tccacataga acagctgcgc ttcgccagga ggtaacaagg ccagacgtca gcttcaaacc
     1801 ggaagcatcc tccagtgaca tcctgcagaa ctggtagcct aacctaacca cagtcgcaac
     1861 tgggtcatag ccatcaggat aggaaactat cgtgtcccca tcactacatg gcttggatgt
     1921 caaaatatgt gtacgatgct tggagcccca gaaaagaagc cattatcttt ccgaggctgc
     1981 gaaaggtttc tcgctacctg actcttgctg aacccatact tagttcttag cactccccag
     2041 atctcagtat ccttgcttag ggattgagtg ctgactgctt tgtttctatc ttgggggtgg
     2101 ggaggcaata ttttaaaatt gtttgcaaga aaaatgtgct acaacgcagg aacctaagcg
     2161 atgatatcat gcactatttc ttgaaattag cgtccttata tcagtggaag aagttgctgg
     2221 gaaggagaaa aacaaaatca tcctcaaaca actgagaatc atcttctttc aaatgtgatt
     2281 tagtttggaa ttatgactgt agtctgttga atagtgttta ccatggtgtt tcatacctgt
     2341 ggtattttat actttgggac gatcaatttt agtattatta gatgtttgtg taatcacttg
     2401 cttatttaaa taaattttga gtactgccta actgtcagta tatgaataaa ttgcatatca
     2461 ttctacagta a
//
