LOCUS       XM_039103369            3738 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus elongation factor for RNA polymerase
            II 2 (Ell2), transcript variant X1, mRNA.
ACCESSION   XM_039103369
VERSION     XM_039103369.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3738
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3738
                     /gene="Ell2"
                     /note="elongation factor for RNA polymerase II 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 45 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     13 samples with support for all annotated introns"
                     /db_xref="GeneID:309918"
                     /db_xref="RGD:1309296"
     CDS             151..2187
                     /gene="Ell2"
                     /codon_start=1
                     /product="RNA polymerase II elongation factor ELL2 isoform
                     X1"
                     /protein_id="XP_038959297.1"
                     /db_xref="GeneID:309918"
                     /db_xref="RGD:1309296"
                     /translation="MRAGGPWWRGPPGRGCAAAAGLSDGARGVPSLFGPEKGPGGGER
                     SAEGARAATSEEATVGILERSEFSRKRRGMAEGLKEGQRLSVGSLIPFQPSIQFQGLQ
                     GLMKIPKNDPFNEVHNFNFYLSNVGKDNPQGSFDCIQQTLSSSGASQLNCLGFIQDKI
                     TVCATNDSYQMTRERMTQAEEESRNRSTKVIKPGGPYVGKRVQIRKAPQAISDAVPER
                     KRSTPMNPANTIRKMHGGSSVSQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDK
                     NSLGAILQQVANLNPKDLSYTLKDYVFKELQRDWPGYSETDKQTLDLVLSRKLNPSQN
                     AGTSRPESPMCSSKDAASSPQKRPLDSDFIDPLTNKKARISHLTNRVPPTLNGHLNPT
                     NEKSCASLLPPPAAAAIPTPSPLPSTHLPVSNPTQTVNSNSNSPSTPEGRGTQDLPVD
                     SFSQNSSIFEDQQDKYTSRTCLEETLPSSSALLKCPKPMEEEHPVSHKKSKKKSKKHK
                     EKDQIKKHDIESREEKEKDLQREETAKLSNDSPNPNEGVKEECTASMEPSSTIELPDY
                     LIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEY
                     QNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWH"
ORIGIN      
        1 gctcggggaa acggcggcca ctgagctttc tgcccggcac ctggcgccgc gccagtgggg
       61 cgctggctcg ggctgctgcg gcggcacccg cctaggggag ggaggccagc cggagtctcc
      121 gggccgtggt ccggggccac tggatcgagg atgcgggcgg gcggcccctg gtggcggggt
      181 ccgcctggca ggggctgcgc ggccgctgcg ggactttctg acggcgcccg cggggttcct
      241 agcttgtttg gtcccgagaa gggaccgggt ggaggagaga gaagtgcgga gggggcgcgc
      301 gcagctacca gtgaagaagc gacggtcggc atccttgagc ggtccgagtt ttctaggaaa
      361 cgccgaggga tggcggaggg gctgaaagaa gggcagaggc tctccgtggg gagtttaatt
      421 ccttttcaac cttcaattca gttccaagga ctccaagggc ttatgaaaat tcccaaaaat
      481 gatcccttca atgaagtcca caactttaac ttctatttgt caaacgtggg gaaagataac
      541 cctcagggca gctttgactg catccagcaa acactctcta gctctggagc ctctcagctc
      601 aattgcctgg gatttataca ggataaaatt acagtgtgtg caacaaatga ttcctatcaa
      661 atgactcgag aaagaatgac ccaggccgag gaggaatccc gtaatcgaag cacaaaagtt
      721 atcaaacccg gtggaccata tgtagggaaa agagtgcaaa ttcgtaaagc acctcaagcc
      781 atctcggatg cagtgcctga gaggaaaagg tcaacgccca tgaaccctgc aaatacaatt
      841 cgaaagatgc atggtggcag cagtgtctct cagaggccgt acagggacag agtcattcat
      901 ttactggcac taaaagccta taagaaacct gagctgcttg cccgactgca gaaagatggt
      961 gtcaatcaaa aagacaagaa ctccttggga gcaattttgc aacaggtggc caatctgaat
     1021 cctaaggacc tctcctatac tttaaaggat tatgtattta aggagctcca gcgggactgg
     1081 ccaggttaca gtgagacaga caaacagaca ctggatttgg tgctctctag aaaattaaat
     1141 ccatctcaga atgctggcac tagccggcca gagtctccca tgtgttccag caaagatgct
     1201 gcctcatctc ctcagaaacg acctttggat tcagatttca ttgatccttt aacgaacaaa
     1261 aaagctcgaa tatctcacct gacaaacaga gtcccaccga cattaaatgg ccatttgaat
     1321 cccaccaatg aaaaatcttg tgcaagcctt ctaccgcccc ctgcagctgc tgccatcccc
     1381 accccctcac cactgccttc aacccacctg cctgtctcca atcctaccca gactgtaaat
     1441 tccaactcca attcccctag cactccagaa ggccggggga ctcaagacct acctgttgac
     1501 agttttagtc aaaacagtag catctttgag gaccagcaag acaaatatac ctcaaggact
     1561 tgtctggagg aaacattacc ctctagctca gctttactaa agtgtccaaa gcccatggaa
     1621 gaagaacatc cagtgtctca caaaaagtcc aaaaagaagt ctaaaaaaca caaggaaaag
     1681 gaccaaataa agaaacatga cattgagagc agggaggaaa aggagaaaga ccttcagaga
     1741 gaagaaactg ccaagctgag taatgacagt ccaaatccca atgaaggagt taaagaagag
     1801 tgcacagctt ccatggagcc ttcttcaaca attgaactcc cagattattt gataaaatat
     1861 attgctattg tctcttatga acaacgccag aattacaagg atgacttcaa tgctgagtat
     1921 gatgaatata gagctttgca tgccaggatg gagactgtag ccaggagatt tattaaactg
     1981 gatgcacaac gaaaacgcct ttctccaggt tcaaaagagt atcagaatgt tcatgaagaa
     2041 gtcttacaag aatatcagaa gatcaagcag tccagtccca attaccatga agaaaaatac
     2101 agatgcgagt atcttcataa caagctggct cacatcaaaa gactaatagg tgaatttgac
     2161 caacagcaag cagagtcgtg gcactagggc tctgcttgaa gcagaagatg tgaataaact
     2221 taagcttatt tatttaaaat tccagatgag ttgctctgga ctctaaacga tgacactttg
     2281 ttggacgttt caggattagt aaacttgagt tacttctgtt cctctccatt ttactttgct
     2341 tccctgaatt tgaagctgct ttttttctgg tcctctccct gacttcccac cccaatcttt
     2401 gttaatagaa gcaatttttt agagattgga gatccagtgt ctatgcttca aatcaatttt
     2461 ccttgaaatc ttgtgtttgt cattagatat gatttttgct agatatcagg gatgcaaagt
     2521 ccacacttaa aagagttgtg tgtgtttaaa acaagacaaa atagtaatgt gcaaggtgat
     2581 aagcttttga ataaacataa gcctattttc tgacctttct taatgcaaac tctttgcctt
     2641 aaatggtaga atatttaaac atttgcacaa agtacaaaaa aatcaaaaca ttgtttttaa
     2701 agggttgaaa aaaggttgtg tgaatgtgtg tagttttcta tgcacatatg catacataca
     2761 tatatacata tatacacaca tacatacata catacataca tacatacata catacatacg
     2821 ggctgtctgg ctccagagtg ttaaatctgc cctacaagtt agacctccat tgcaatggct
     2881 gccttaaggt gtttgctaca tcatgtggtt aatcagtagc tacactgctt cccagtgata
     2941 acaaccctgg gaagcatact gtggcctacc agcatcatca gaaagtgtgt gttctgcttg
     3001 tatgtctgca gagctgctgt ggatgtgagc tgcgtgaagg ctaagaagct gctgctctca
     3061 ggccagacac tcaggttaaa gaactgatga gtattgcagt agcttatttg gtgtgtgtgt
     3121 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt ggtgtgtttc tgtcaggttg
     3181 ctacttctat tgtggaagac aaaagcattt ccatttcaac agtttgtcag ctttattaat
     3241 gttgggcaaa aaatgatatg ttataaaaat gaaacagatc ttatagtttt ggggcaaaat
     3301 gacaaaaata aatgtgtagg taatctattt atatactgct ataaagtatt ttttgaagag
     3361 agatatgcaa gaaactatta cctacataca tcagatgtat atttaaagat ttctttcatc
     3421 ctgcatacca ggaatataaa aaagtagata tatataacca taacatactg tgattcatca
     3481 aatagcacaa actttcattt catggatttt atctgttaac gttgatttaa actatcactt
     3541 gtcttatcat gtgggagcat aagttatgtg gtcaaaatag aaggattttg aactaaagtt
     3601 gattcaggtt gtcttgcacc gtttcaaagt gctgccagtt gaaaagggaa gcattatgtt
     3661 tacaaatctg ttttaaaaag tttgccaaaa ttttggtagt atctttaata aagatgtttg
     3721 tcttcagcat ccaaaaaa
//
