LOCUS       NM_001108956            2194 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus E74 like ETS transcription factor 5 (Elf5), mRNA.
ACCESSION   NM_001108956 XM_001079426 XM_039105597 XM_345409
VERSION     NM_001108956.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2194)
  AUTHORS   Donnison,M., Broadhurst,R. and Pfeffer,P.L.
  TITLE     Elf5 and Ets2 maintain the mouse extraembryonic ectoderm in a
            dosage dependent synergistic manner
  JOURNAL   Dev Biol 397 (1), 77-88 (2015)
   PUBMED   25446535
REFERENCE   2  (bases 1 to 2194)
  AUTHORS   Pearton,D.J., Smith,C.S., Redgate,E., van Leeuwen,J., Donnison,M.
            and Pfeffer,P.L.
  TITLE     Elf5 counteracts precocious trophoblast differentiation by
            maintaining Sox2 and 3 and inhibiting Hand1 expression
  JOURNAL   Dev Biol 392 (2), 344-357 (2014)
   PUBMED   24859262
REFERENCE   3  (bases 1 to 2194)
  AUTHORS   Bruno,R.D., Boulanger,C.A., Rosenfield,S.M., Anderson,L.H.,
            Lydon,J.P. and Smith,G.H.
  TITLE     Paracrine-rescued lobulogenesis in chimeric outgrowths comprising
            progesterone-receptor-null mammary epithelium and redirected
            wild-type testicular cells
  JOURNAL   J Cell Sci 127 (Pt 1), 27-32 (2014)
   PUBMED   24190884
REFERENCE   4  (bases 1 to 2194)
  AUTHORS   Harris,J., Stanford,P.M., Sutherland,K., Oakes,S.R., Naylor,M.J.,
            Robertson,F.G., Blazek,K.D., Kazlauskas,M., Hilton,H.N.,
            Wittlin,S., Alexander,W.S., Lindeman,G.J., Visvader,J.E. and
            Ormandy,C.J.
  TITLE     Socs2 and elf5 mediate prolactin-induced mammary gland development
  JOURNAL   Mol Endocrinol 20 (5), 1177-1187 (2006)
   PUBMED   16469767
REFERENCE   5  (bases 1 to 2194)
  AUTHORS   Donnison,M., Beaton,A., Davey,H.W., Broadhurst,R., L'Huillier,P.
            and Pfeffer,P.L.
  TITLE     Loss of the extraembryonic ectoderm in Elf5 mutants leads to
            defects in embryonic patterning
  JOURNAL   Development 132 (10), 2299-2308 (2005)
   PUBMED   15829518
REFERENCE   6  (bases 1 to 2194)
  AUTHORS   Zhou,J., Ng,A.Y., Tymms,M.J., Jermiin,L.S., Seth,A.K., Thomas,R.S.
            and Kola,I.
  TITLE     A novel transcription factor, ELF5, belongs to the ELF subfamily of
            ETS genes and maps to human chromosome 11p13-15, a region subject
            to LOH and rearrangement in human carcinoma cell lines
  JOURNAL   Oncogene 17 (21), 2719-2732 (1998)
   PUBMED   9840936
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_039105597.1, NM_001108956.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.818230.1,
                                           SRR22582419.1165344.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784, SAMN16676785
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-112               JAXUCZ010000003.1  110264503-110264614
            113-237             JAXUCZ010000003.1  110270726-110270850
            238-471             JAXUCZ010000003.1  110278976-110279209
            472-522             JAXUCZ010000003.1  110282574-110282624
            523-585             JAXUCZ010000003.1  110288488-110288550
            586-781             JAXUCZ010000003.1  110289890-110290085
            782-2194            JAXUCZ010000003.1  110290514-110291926
FEATURES             Location/Qualifiers
     source          1..2194
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q32"
     gene            1..2194
                     /gene="Elf5"
                     /note="E74 like ETS transcription factor 5"
                     /db_xref="GeneID:366142"
                     /db_xref="RGD:1305859"
     exon            1..112
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     exon            113..237
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..878
                     /gene="Elf5"
                     /note="E74-like factor 5"
                     /codon_start=1
                     /product="ETS-related transcription factor Elf-5"
                     /protein_id="NP_001102426.1"
                     /db_xref="GeneID:366142"
                     /db_xref="RGD:1305859"
                     /translation="MLDSVTHSTFLPNASFCDPLMSWTDLFNNEEYYPAFEHQTACDS
                     YWTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFIEAAG
                     ICGEYLYFILQNIRSQGYSFFNDAEETKTAIKDYADSSCLKTSGIKSQDCHTRTNLQS
                     SHLWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKNDRMTYEKLS
                     RALRYYYKTGILERVDRRLVYKFGKNAHGWQEEKL"
     exon            238..471
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     exon            472..522
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     exon            523..585
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     exon            586..781
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
     exon            782..2194
                     /gene="Elf5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcacaaggc tacaggtgcc tttatttcta ccgtccgctg gtgctgggag cgcgcctgcc
       61 ttctcttgcc ttgaaagcct tctgtctgga cctagccacc acttgtcttc acggtgatgt
      121 tggactctgt aacccatagc accttcctgc ccaacgcttc cttctgtgac cccctgatgt
      181 cttggaccga tctgttcaac aatgaagaat attaccctgc ctttgagcat cagacagcct
      241 gtgattccta ctggacatca gtgcaccctg aatactggac caagcgccat gtctgggaat
      301 ggctccagtt ctgctgtgac cagtacaagc tcgacgccaa ctgcatctcc ttctgtcact
      361 tcaacatcag cggtctgcag ctgtgcagca tgacgcagga ggagttcatt gaggcagccg
      421 gcatctgtgg ggagtacctg tacttcatcc tccagaacat tcgctcacaa ggttattcct
      481 ttttcaacga tgctgaagag actaagaccg ccatcaaaga ttatgctgat tccagttgct
      541 tgaaaacaag tggcatcaag agtcaagact gtcacacccg aacaaacctc caaagttctc
      601 acctgtggga atttgtcaga gacttgcttc tgtctcctga agaaaactgt ggcatcttgg
      661 agtgggaaga cagggagcag ggcatcttcc gagtggttaa gtcagaagcc ctggcaaaga
      721 tgtggggaca aaggaagaaa aacgacagga tgacgtatga aaagttgagc cgagccctga
      781 gatactacta taaaacggga attttggagc gggttgaccg gcggttagtg tacaaatttg
      841 gaaaaaatgc gcacgggtgg caggaagaga aactatgatc tacaccggac accaggctca
      901 cttgatggat tgctgttgtt tgaaacaatc agatcaaact agacatttga aagtcttcct
      961 cctcctcccc cctcctcccc cctcctcccc cctcctcccc cttccctcct cctttccctc
     1021 ctccccctcc tcctcttcaa aacctacaaa cacactgata aaatttctgg tgtctcagct
     1081 tacatttgaa ttcagttgtt gtctattggg gtgatggcat cagcccttaa gcaatggtct
     1141 tcatccctag ggggaggaag ggatggtctt gtggcaactt ggtgggacat tgttttctta
     1201 atgaagtgtt tggagccaag gtagccagtg ttatgggtgc tgtttcaaaa gagggccctg
     1261 ttacgccgtt aaggacacat gatcctccca ttccagaggt tctgaaccct caactgaggc
     1321 agctcacccg tggttagttt ttaggagagg gtgagatgta tgacttactt actttaggtt
     1381 tgaaattatc acaattatat tccatagaaa tttataataa aaataaaaag ctaagccact
     1441 aaactgggac ctaattggat atagcctaag ttagtaataa gtttcttagc cagatcacca
     1501 tttttgacca cttagccaca cccacttaat ccatggccaa tccttctgaa cttaacatgc
     1561 ttgtaattag tcacattggg actgaaactg ttgccccctt ctcctcactg gtggctagtg
     1621 tcagatctat agagaccaag tcaacaggca tgtgcattca tttctaaatc actgctgtgc
     1681 ctatgattca aactgtcaat gtgttcaaat agaatttatt gattctctct gaggctaaga
     1741 tgttaaacct ttacagagca gaaaatgtcc tgacaagcca tgacaggcga acatgtcaat
     1801 ctctttcctg atttgtcctg atgaatactc aaacatccca acatattctc ttcacaaaaa
     1861 taagaacagt gaatttacat caataactgc tcatgggtta aagtctgcac tgacatttcc
     1921 tcgtctgccg ttggcataca cgcaaggtgt taatgacctg caacatggta gagtgccctg
     1981 aaccctaact tccccagaac tgggactgtc tagcgacagg cactgaatag caatgcaggc
     2041 tgaagacctc catgtttaga gtttaacctc aaaagttaac ttgttttttt ttttaaatgt
     2101 gaattactgt aacataatct atttttggat tcgtgtgttt tccaggtgga catagtttat
     2161 aaacaatgtg aataaaatat ttaacatgtt caaa
//
