LOCUS       NM_001107406            2836 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus elaC ribonuclease Z 1 (Elac1), mRNA.
ACCESSION   NM_001107406 XM_001069891 XM_226184
VERSION     NM_001107406.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2836)
  AUTHORS   Brzezniak LK, Bijata M, Szczesny RJ and Stepien PP.
  TITLE     Involvement of human ELAC2 gene product in 3' end processing of
            mitochondrial tRNAs
  JOURNAL   RNA Biol 8 (4), 616-626 (2011)
   PUBMED   21593607
REFERENCE   2  (bases 1 to 2836)
  AUTHORS   Maraia RJ and Lamichhane TN.
  TITLE     3' processing of eukaryotic precursor tRNAs
  JOURNAL   Wiley Interdiscip Rev RNA 2 (3), 362-375 (2011)
   PUBMED   21572561
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473971.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001069891.1, XM_226184.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132265,
                              SAMD00132267 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18q12.2"
     gene            1..2836
                     /gene="Elac1"
                     /note="elaC ribonuclease Z 1"
                     /db_xref="GeneID:307604"
                     /db_xref="RGD:1304757"
     exon            1..74
                     /gene="Elac1"
                     /inference="alignment:Splign:2.1.0"
     exon            75..239
                     /gene="Elac1"
                     /inference="alignment:Splign:2.1.0"
     CDS             83..1171
                     /gene="Elac1"
                     /EC_number="3.1.26.11"
                     /note="elaC homolog 1"
                     /codon_start=1
                     /product="zinc phosphodiesterase ELAC protein 1"
                     /protein_id="NP_001100876.1"
                     /db_xref="GeneID:307604"
                     /db_xref="RGD:1304757"
                     /translation="MSMDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQ
                     LMKSQLKAGRITKIFITHLHGDHFFGLPGLLCTISLQSGSVVSRQPIEIYGPVGLRDF
                     IWRTMELSHTELVFPYVVHELVPTADQCPVEELRESAQMDEADSSPKGQGRTILLDAE
                     ENSYCLVDDEQFVVKAFRLFHRIPSFGFSVVEKKRTGKLSAQKLRDLGVPPGPAYGKL
                     KNGISVVLDNGVTISPQDVLKKPMVGRKVCILGDCSGVVGDGGVKLCFEADLLIHEAT
                     LDDSQMDKAKEHGHSTPQMAATFAKLCRAKRLVLTHFSQRYKPTALAREGEADGITEL
                     KKQAESVLELQEVTLAEDFMVIGIPIKK"
     exon            240..704
                     /gene="Elac1"
                     /inference="alignment:Splign:2.1.0"
     exon            705..2836
                     /gene="Elac1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgccactc gcgcactgct gggcctcgga gccggcctgc gcctccctcg gctccggcgg
       61 gcctcaggga gaggggtgga agatgtctat ggatgtgacc tttcttggga caggagcagc
      121 atatccatcg cccactcggg gcgcctctgc cgtggttctt cggtgtgagg gcgagtgctg
      181 gctcttcgac tgtggggagg gcacacagac ccagcttatg aaaagccagc ttaaagcagg
      241 gagaatcacc aagatcttca tcacacatct ccatggagac cacttctttg gccttccagg
      301 cctcctctgc accatcagcc tgcagagtgg ctctgtggtc agcaggcagc ctattgagat
      361 ctacggcccc gtcggccttc gggactttat ctggagaacc atggagctct ctcacacgga
      421 gttggttttc ccttatgtgg tccacgagct ggttcctaca gctgaccagt gccctgtgga
      481 agaactaaga gaatctgcac aaatggatga agcagacagc tctcccaaag gacaaggacg
      541 gactatcttg ctagatgcag aggaaaactc ctactgtctg gtggatgacg aacagtttgt
      601 ggtaaaagcc ttccgcctct tccatagaat tccatctttt ggcttttccg tcgtggaaaa
      661 gaagcgcacc ggaaaactca gtgctcagaa gctgagagac cttggtgtcc caccaggtcc
      721 tgcctatggg aagctgaaga atgggatttc tgttgttttg gataatggag ttacaatttc
      781 tccccaagat gtcttaaaaa aacctatggt tggaagaaaa gtctgcatcc tgggcgactg
      841 ttccggggtc gtgggtgatg ggggagtgaa gctgtgcttt gaggcagacc tgctgatcca
      901 tgaggcgact ctggatgact cccagatgga caaggcgaag gagcatggcc acagcacacc
      961 acagatggca gcaacatttg caaagctgtg ccgtgcaaag cgcctcgtcc tgactcactt
     1021 cagccagagg tacaaaccaa ctgccttagc cagagaaggg gaggcagacg gcatcacgga
     1081 actgaaaaag caagccgagt ctgtgctgga gctccaagaa gtgactctag cggaagattt
     1141 tatggtgatt ggcattccga tcaagaagtg acacgcacgc tcccgagtgc gttagtgtgg
     1201 acgtggtatg gatgtgttac cagacctgca ctacagactc ttttgtttct taaaattact
     1261 ttggccctaa caatcctaaa gatggagctg gattgctgag ctgactcagt agtgagaggg
     1321 aacgagattt tttttttttt tttttggttc tttttttttg gagctgggga ccgaacccag
     1381 ggccttgcgc ttgctaggca agcgctctac cactgagcta aatccccaac cccgggaaca
     1441 agattttaaa taatgaatca tttttaaaag atgaaaaaat ttaaatcatt taaatttaaa
     1501 tttttaaata tgaaaagtcc ttcctgaagt gcagaggtga caagataatt catggtgcag
     1561 ggaacttatt ttgtggctgt tgctacagac agcgttcaac tctgtgcagt gtcggactta
     1621 gcggcgccca gcttagtcgc cactactgat gacgtatgca ggactgaggc ctcttggcta
     1681 aagaaacggt agcagaattt gtaccgaatt tgcgtcccta atggagataa atgtatgggg
     1741 gcaatacatg ggcagtattg gtgacacggt ggtctcaccg ggaggtcagt gcaggtttgg
     1801 actgagtttt agcattttct tcaacatcct ggtttctttt aacacacggt cctgggtaga
     1861 ctactaagaa ttaggtaatg gaattgtttt cctgcggcag tgacggaggg gagatggtga
     1921 cagcacagta gtgtagtcag tgggggtcag ggatgccata catgctgcgc agtcctgcat
     1981 aagaattacc tcaaagtcct aggcctgtgc agagacacaa attaaagcct tcattcctta
     2041 tgcgatgtgc tcggccaagg ttaatgacgt aatgggctgc agtaatagat cagccaagtc
     2101 ctccaatagg aggggagggt gtgtgtgtca gaattagatg ctgcagcagg tgttatttgg
     2161 aaaagtgagt catcgagtga atctcataga tgtggagaga gacagtcacc ccagcccagg
     2221 gagagtctgc ctcaggccta gaagtcctgg agctgtgttg tgagttgagt gtggtggaag
     2281 ttggagaggg agctcctgct tctgcttcca gaggctgagt taggaggtca gagtagaccc
     2341 gaccctgcac tgccgagctg cctgggtgat tctgacagac ataggtactg aaccagccta
     2401 ggagaaaaaa aaattgtctt tttttttcta tgtatttaaa ttcagggtat atatatattt
     2461 tatagattct tatatatata tatgtttatg tgtggtatat tttatgcatg catattttta
     2521 catgaaagct gacctccctc cactattttc ctaaagcaaa ataaagatat tttattggac
     2581 aaacaaaagc taggagttta ttaccagaaa atactctttt agaaattctg aggcattatt
     2641 ttggcacaat aaaaataatg ttgtaaggtt gagaaagcat aaaggggcaa acagatgggt
     2701 gctgtagagg gacactgact acaggcagct gacaagtccg gaccctcgtt ctcattatcg
     2761 ttcctacagc agcaaagagt ctttcgaagc gtgagactaa tgcactttta gagctgtgtt
     2821 atttaatgat gtcttt
//
