LOCUS       NM_001012192            1603 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus EARP complex and GARP complex interacting protein
            1 (Eipr1), mRNA.
ACCESSION   NM_001012192 XM_343042
VERSION     NM_001012192.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1603)
  AUTHORS   Gershlick,D.C., Schindler,C., Chen,Y. and Bonifacino,J.S.
  TITLE     TSSC1 is novel component of the endosomal retrieval machinery
  JOURNAL   Mol Biol Cell 27 (18), 2867-2878 (2016)
   PUBMED   27440922
REFERENCE   2  (bases 1 to 1603)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1603)
  AUTHORS   Canestri,F.
  TITLE     A proposed clinical application of a model of CO2 laser radiation
            induced damage craters
  JOURNAL   J Med Eng Technol 12 (3), 112-117 (1988)
   PUBMED   3172165
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087633.1.
            
            On Feb 11, 2005 this sequence version replaced XM_343042.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087633.1, SRR8487226.26863.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1603
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..1603
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /note="EARP complex and GARP complex interacting protein
                     1"
                     /db_xref="GeneID:362721"
                     /db_xref="RGD:1305817"
     exon            1..113
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             72..1232
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /note="protein TSSC1; EARP-interacting protein;
                     endosome-associated recycling protein-interacting protein;
                     tumor suppressing subtransferable candidate 1;
                     tumor-suppressing STF cDNA 1 protein; Golgi-associated
                     retrograde protein-interacting protein; tumor-suppressing
                     subchromosomal transferable fragment candidate gene 1
                     protein"
                     /codon_start=1
                     /product="EARP and GARP complex-interacting protein 1"
                     /protein_id="NP_001012192.1"
                     /db_xref="GeneID:362721"
                     /db_xref="RGD:1305817"
                     /translation="MEDDAPVIYGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIH
                     IIDFDDENNIINKNVLLHQAGEIWHISASPADKGVLATCYNKTSDSRVQACAAVWRMP
                     KELESGSHESPEDPASTAQTLELLCHLDNGAQGNVACVVWEPMGDGKKVISLADSHIL
                     LWDLQPSSSQAVLASSAALEGRGQLKFTSGRWSPHHNCTQVATASDTTLRGWDTRSMS
                     QIYCIENAHGQLVRDLDFNPNKQYYLASCGDDCKVKFWDTRNVTEPVKTLEEHSHWVW
                     SVRYNHSHDQLVLTGSSDSRVILSNMVSISSEPFGHLVDDDDVSDPEEHHTEKSKEPL
                     QDNVIATYEEHEDSVYAVDWASADPWLFASLSYDGRLVINRVPRALKYHILL"
     exon            114..197
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            198..330
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            331..487
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            488..587
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            588..724
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            725..892
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            893..1057
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1578
                     /gene="Eipr1"
                     /gene_synonym="Tssc1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggttctggc cgatccctgg tgaggcggga ctcgggctct aaggcttgag tagttcggca
       61 ggcagagtat catggaagac gacgccccgg tgatctacgg gctggaattt caggcacgtg
      121 ctctaacacc tcaaactgcg gaaacagatg ccattcgctt cttggttggg acgcagtctc
      181 ttaaatatga taatcagatc cacatcatag actttgatga cgaaaataac attataaata
      241 aaaatgtcct cctccatcaa gccggtgaga tctggcacat cagtgccagc ccagcagata
      301 aaggtgtcct ggccacctgc tacaacaaaa cttcagacag tcgagtccag gcatgtgcag
      361 ccgtgtggag gatgcccaag gaattagaat ctggtagcca cgagtcccct gaagaccctg
      421 caagcactgc gcagaccctg gagctgctct gtcaccttga caacggggcc caaggcaacg
      481 tggcctgtgt cgtgtgggaa ccgatggggg atgggaagaa ggtcatttcc ctggccgaca
      541 gccacatact tctgtgggac ctccagccca gctcaagcca agctgtgctg gccagctcag
      601 cagcactgga aggaagggga cagctgaagt ttacctcggg ccggtggagc ccacaccaca
      661 actgtaccca ggtggccaca gccagtgata ctaccctccg aggatgggat acacggagca
      721 tgagccagat atactgcata gagaacgctc atgggcagct ggtgcgtgac ctagacttca
      781 accccaacaa gcagtattac ctcgccagct gtggagatga ctgcaaggtg aagttctggg
      841 acacacggaa tgtcaccgag cctgtgaaga ccctggagga gcattcccac tgggtgtgga
      901 gcgtgcgtta caaccactct cacgaccagc tggtcctcac tggcagcagc gacagcagag
      961 ttatcctgtc caacatggtg tctatctcct cagagccctt tggccacctg gtggacgatg
     1021 atgacgtcag tgacccagag gagcaccata ctgagaagag taaggaaccc cttcaggaca
     1081 acgttattgc cacctatgag gagcatgagg acagcgtgta tgctgtggat tgggcctcag
     1141 ctgacccatg gctgttcgct tccctgagtt acgatgggag actagttatc aacagagtcc
     1201 ccagggcact gaagtaccac atactgctct agtggcccat ggcactgctg cttggtactc
     1261 ggcaaattct cagaaatctg cagctacgag gtaattccct tcacagacat ccctccttgg
     1321 gagaaccagc gttgcttctc caggagctct aaggactgga gctactgcca gcagctcatc
     1381 tgatgttgtc agcacactgc tcagcatggg agggagccat actggacaca gcattcctgt
     1441 gtgaattgat ggttgcccag tctctggtcg gtttctggtt tctgtcttaa gggtgttggg
     1501 agtttaactt ttccacagtg tgtttccgcc ttcctgttgt catgagatta caaactgaaa
     1561 taaagtcagt gggatgtgaa aaaaaaaaaa aaaaaaaaaa aaa
//
