LOCUS       XM_039109656            7217 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus eukaryotic translation initiation
            factor 4 gamma, 3 (Eif4g3), transcript variant X19, mRNA.
ACCESSION   XM_039109656
VERSION     XM_039109656.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109656.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7217
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7217
                     /gene="Eif4g3"
                     /note="eukaryotic translation initiation factor 4 gamma,
                     3; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 47 ESTs, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 123 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:298573"
                     /db_xref="RGD:1311370"
     CDS             1096..6363
                     /gene="Eif4g3"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 4 gamma
                     3 isoform X19"
                     /protein_id="XP_038965584.1"
                     /db_xref="GeneID:298573"
                     /db_xref="RGD:1311370"
                     /translation="MSLPQKPALKSGSAAAAGTGPGTGAAAAAAAAAVPPPHPAAAAA
                     AAAAAAAAAAVAAAPPHPNIRALQTPAPQQIPRGPVQQPLEDRIFPPTVSAVYSTVTQ
                     VARQPGPPTPSPYSAHEINKGHPNLAATPPGHASSPGLSQNAGPATLVYPQAPQTMNS
                     QPQARSPFAAGPRPAHHQFFQRPQIQPPRAAIPNSSPSLRPGAQTPTAVYQANQHIMM
                     VNHLPMPYPVPQGPQYCIPQYRHSGPPYVGPPQQYPVQPPGPGPFYPGPGPGDFANAY
                     GTPFYPSQPVYQSAPIIVPTQQQPPPAKREKKTIRIRDPNQGGKDITEEIMSGGGSRN
                     PTPPIGRPTSTPTPPQQLPSQAPEHSPVVYGTVESAHLAASTPVTAASDQKQEEKPKP
                     DPVFQSPSTVLRLVLSGEKKEQAGQIPETAAGEPSPEPPRTSSPTTLPPLARSSLPSP
                     MSAALSSQQLLTAEDKCELSSSKDDAPPVRSPTSCTAAPGPSLTDDIGLCKKPCGVAP
                     PDGQLVSSPVLINEMNGVGEKLPAKENTVDMVRQEVLPLTLELEILEHPQEERKVECT
                     PTPITPSTMPSFSPAPPTPPASPPCTPVVLSATIARSPAVATVIQRVVDEGESLRTCL
                     SKDAKETQDKAEAESDGQTEETADPQNAHAGRSPAPVQTATTAPKTWKKTKERTRTPD
                     EVLEAEAEPKAEEELSVDSVLEPEQEKMSQGFQFERDPSTLKRAKAEEENGEEAEPVR
                     NGAESASEGEGGDANSGSTDSSGDGVTFPFKAESWKPADTEGKKQYDREFLLDIQFMP
                     ACIQKPEGLPPISDVVLDKINQPRLPMRTLDPRILPRGPDFTPAFADFGRQTPGGRGV
                     PLLSVGPRRSQPGQRREPRKIITVSVKEDVHLRKAENAWKPSQKRDSHADDPESIKTQ
                     ELFRKVRSILNKLTPQMFNQLMKQVSALTVDTEERLKGVIDLVFEKAIDEPSFSVAYA
                     NMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAP
                     EERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEESL
                     ECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNW
                     VSRRADQGPKTIEQIHKEAKIEEQEEQRKVQQLMTKEKRRPGVQRVDEGGWNTVQGAK
                     NSRVLDPSKFLKITKPTIDEKIQLVPKAQLGSWGKGSSGGAKASETDALRSSASSLNR
                     FSPLQPPAPSGSPSATPLDFDSRRALTSRGSMGREKSDKPLPAGTARPNTFLRGSSKD
                     LLDNQSQEEQRREMLETVKQLTGGVDAERASTEADRSKARELVKSEVCTVPAPDKPAL
                     SEEEVERKSKSIIDEFLHINDFKEATQCIEELSAQGPLHVFVKVGVEFTLERSQITRD
                     HMGHLLYQLVQSEKLSKQDFFKGFSETLELADDMAIDIPHIWLYLAELVTPMLKEGGI
                     SMRELIVEFSKPLLPVGRAGVLLSEILHLLCRQMSHKKVSALWREADLSWKDFLPEGE
                     DVHNFLLEQKLDFTESEGPCSSEALSKKELSAEELSQRLEKLIMEDKADDERIFDWVE
                     VQTLTVLCGLCRMASGFLRVHITSPLLNTFYPSCASGFCACMYTVYLKFRDCFYKRSV
                     IFTLFIYLFIYLFIYLFIYLFCVSFLRQGLIMCSPGCPGICKVNQAGLQFIEIFLPLL
                     LYAAVPRHFQSSTHKTYSEHNPSLGVSFH"
ORIGIN      
        1 tgaatcctct ccatcccttc ccagccagga accctggggc agtcactttc ttctccgggc
       61 ttcctctgca aaatggggct cctcgttcca tttcgcactt agggcatctg aggacgacgt
      121 gtcgacataa tgcccaggac ttgcgacgtc aagggccggc gagtggcatt tgttatgtta
      181 ataactcctt gcggcgggcg ggttcctatc tgtcggtttg tgctctggct tagcggttcc
      241 ctccacagag actcggtttt tccgctccgc cgcctctcga cgtttgcttg acaggtctcg
      301 gcggacagct gcctcgggtg cggttcttcg aggctgggct ctttccctac agacctctcc
      361 tctggtctct acctcagccc ggcaccgagc cgcggggaat ctcagcggtc cgggatcacc
      421 gatctttgcc gagaaagagt gtcagctcct gcggcgttcc cgaacagcgg ccgaagacgc
      481 tcccgagcgc tcccgaagaa ccccggccgc tcgcagtctc cggaaatagc cgagggagct
      541 ttccaccctc ggtctgccga gtccttccga aaagggccga aaagctccga gcggccgtcc
      601 tgccggactg ctggaggcgg ccgcagcgcc atgttggatg ctctgctcgt tgagtgaaga
      661 aaatccgtcc gcatcgcccg agccccgcta ccgagaaggg cgccgcttcc cccggggagg
      721 gggacagaga ccccccgccg ccggcccatg aggatattgc cgtgaaaggt ccggtctctc
      781 cgcctcctgc ccccgccggg tccggccccc cccctccccg gggtcgcgtt gtcacggaga
      841 ccggcagccg gtggtgctgg cccgcggggc ggctgctgct gcccgcggcg gcggcggcgg
      901 aggcggcggc ggcggcggcg gagggcgtgt gtgaccggtc ccggccccct cctcctcctc
      961 ctcccagcct ccccccggcc ccccgctccc gccgcctccc cgggtctgcc cccatcccgc
     1021 ccctccgctg cccccggccc ctgcaccccg gcgcgcccgg tcccgctctg ggggggttgg
     1081 tggcttcgct ttgccatgag tttaccgcag aaaccggctc tgaaatcagg ctcagcggct
     1141 gcagcaggaa ccggacccgg caccggagcg gcggcggcgg cggcggcggc ggcggtaccg
     1201 cctcctcacc cggcggcggc ggcggcggca gcggcggcgg cggcagcggc agcagcggta
     1261 gcggcggccc ctcctcaccc gaacatcagg gccctccaga ccccggcgcc ccaacaaatt
     1321 cctcgaggac cggtgcaaca gcctctggag gatcggatct tccctcccac ggtctctgca
     1381 gtctatagca cggtaacaca agtagcaaga cagccaggac ccccgacccc ttccccttac
     1441 tcagcacatg aaataaacaa ggggcacccc aatcttgcgg ccacgccccc gggacatgca
     1501 tcgtcccctg gactctctca aaatgcaggt ccagccacat tggtctatcc tcaagcccct
     1561 cagacaatga attcacaacc tcaggcccgg tctccgtttg cagcggggcc tcgacctgct
     1621 catcatcagt ttttccagag gcctcaaatc cagcctccca gagcggccat cccaaacagc
     1681 agtccttccc tccgtcctgg tgcgcagacc cccaccgccg tgtatcaggc caatcagcac
     1741 atcatgatgg ttaaccatct gcctatgcca tacccagtgc cccaggggcc tcagtactgc
     1801 ataccacagt accgccacag tggccctccg tatgtggggc ccccacagca gtacccagtt
     1861 cagccacccg gccccgggcc tttttatcct ggaccaggac ctggggactt tgctaatgct
     1921 tatggaacgc ctttttaccc aagtcagcca gtgtatcagt cagcacctat catagtgcct
     1981 acgcagcagc agccccctcc agccaagaga gagaaaaaaa ctatacgaat tcgagatcca
     2041 aatcagggag gtaaagacat aaccgaggag attatgtctg gaggtggcag cagaaatccc
     2101 actccaccta taggaagacc cacatccaca cccactcctc ctcagcagct gcccagccag
     2161 gcccctgagc acagccctgt ggtatatggg actgtggaga gcgctcatct tgctgccagc
     2221 acccctgtca ctgcagctag cgaccagaag caagaagaaa agccaaaacc agacccagtg
     2281 ttccagtctc cttcaacagt ccttaggctc gtgcttagtg gggagaagaa agagcaagca
     2341 ggccagatac ccgagactgc tgcaggagag cccagcccag agcctcctcg gacctcatca
     2401 cccaccaccc ttcctccact tgcccggagt tcactccctt cccccatgtc cgctgccctt
     2461 agcagccagc agctgctcac tgctgaggac aagtgtgaac tctcttcctc aaaagatgat
     2521 gccccccctg tgcgcagccc cacgtcttgc acagcagcac caggcccttc actaacagat
     2581 gacattggtc tatgcaagaa accctgtggt gtagcacctc ctgacggcca gctcgtttct
     2641 agtcctgtcc taattaatga aatgaacgga gttggtgaga aattaccagc caaggagaac
     2701 actgtggaca tggtgagaca ggaagtgttg ccactgactc ttgaactgga gattctggag
     2761 catccccagg aagaaaggaa agtggagtgt accccgactc ccatcacccc gtccacgatg
     2821 ccttccttct ccccagcccc tccaactccg ccagcttctc ctccttgtac tcctgttgtc
     2881 ctgtctgcca ccattgctcg atctcctgct gttgccactg tgatccagag agttgtcgac
     2941 gagggagaga gcctgagaac ttgtcttagc aaggatgcca aggagacaca ggacaaagcg
     3001 gaggcagagt cagatgggca aacagaggag actgcggatc cccagaacgc acatgcagga
     3061 aggagccctg ccccagtgca aacagctacc actgcgccaa agacgtggaa gaaaacaaaa
     3121 gagcggaccc gaaccccaga tgaagtgtta gaagcagagg cagagcctaa agcagaagaa
     3181 gagctttcag ttgacagtgt ccttgaacct gagcaagaga agatgagcca agggtttcag
     3241 tttgagagag acccctctac cctgaaaaga gcgaaagctg aggaagaaaa cggagaagaa
     3301 gcagagcctg tgcgcaatgg tgctgagagt gcttccgagg gggaaggagg agacgctaat
     3361 tcaggctcta ccgatagctc tggagatggg gtcacattcc catttaaagc agagtcctgg
     3421 aaacctgcag atacagaagg caagaagcaa tatgaccggg agttcctatt ggacatccag
     3481 tttatgcctg cctgtatcca aaaaccagaa ggcctacctc ccatcagcga tgtggttctt
     3541 gacaagatca accagcccag attgccaatg cggaccctgg atcctcgaat tttgcctcga
     3601 ggacctgatt tcaccccagc ctttgcagat tttggaagac agacgcctgg tggaagaggc
     3661 gtgcctttgt tgagtgttgg acctcggagg tctcaacctg gccagagaag ggagcccagg
     3721 aagataatta ctgtctccgt aaaagaagac gtgcacttga gaaaggcaga gaatgcctgg
     3781 aagcccagcc agaagcggga cagccatgcc gatgaccccg aaagcattaa aacgcaggaa
     3841 cttttcagaa aagttcgaag tatcctaaat aaactgacac cacagatgtt caaccagctg
     3901 atgaagcaag tgtcggcact taccgtggac acagaggagc ggctaaaggg ggtcatcgac
     3961 ctggtctttg agaaggctat cgatgagccc agcttctctg tggcgtacgc aaacatgtgt
     4021 cggtgcctag taacgctgaa ggtacctatg gcagacaagc ccggtaacac agtaaatttc
     4081 cggaagctgc tgcttaatcg ttgccagaag gagtttgaaa aggataaagc agatgatgac
     4141 gtctttgaga agaagcagaa agaactggaa gctgccagtg ctccagagga aagaacgagg
     4201 cttcacgatg aactggaaga agccaaggac aaagcccggc ggagatccat cggcaacatc
     4261 aagttcattg gagagctctt taaactcaaa atgctgacgg aggccatcat gcatgattgt
     4321 gtggtgaagc tgctaaagaa ccatgatgag gaatccctgg agtgcctgtg tcgcctgctc
     4381 accaccatcg gcaaagacct ggactttgag aaagcaaagc cgcgcatgga ccagtacttt
     4441 aaccagatgg agaaaattgt caaagaaagg aaaacttcct cccggattcg gttcatgctt
     4501 caggatgtaa ttgacctcag gctgtgtaat tgggtgtccc gaagagcaga tcaggggcca
     4561 aagactatcg agcagattca caaagaggcc aaaatagaag aacaagagga gcaaaggaaa
     4621 gtccagcagc tgatgaccaa ggagaagaga agaccaggcg tccaaagagt ggatgaaggt
     4681 ggatggaata ctgtacaagg ggccaagaac agtcgtgtac tggacccctc caaatttttg
     4741 aaaatcacta agcccaccat tgacgagaag attcagctgg ttcctaaggc acagctgggc
     4801 agctggggca aaggcagcag tggtggagca aaggcaagcg agactgacgc cttacggtca
     4861 agtgcttcca gtttaaatag attctctcct ctgcaacctc cagcgccttc agggtccccg
     4921 tcagccacgc ctttagactt cgattcccgg agggcgttaa ccagtcgtgg gagcatgggc
     4981 agggagaaga gcgacaagcc gcttccagct ggaacagccc gtcccaacac gttcctgagg
     5041 ggcagcagca aagacctgct ggacaaccag tctcaggaag agcagcgcag agagatgctg
     5101 gagacggtga agcagctgac aggaggcgtg gacgccgagc gggccagcac tgaggccgac
     5161 cgaagcaaag cgagggagct agtcaagtca gaagtgtgca cagtgccagc ccccgacaag
     5221 cctgcactgt cagaagagga agtagagagg aagtccaagt ctatcattga cgagttcctg
     5281 cacatcaatg actttaagga ggccacacag tgcatagagg agctgagtgc ccagggccca
     5341 ctgcatgtgt tcgtgaaggt gggtgtggag ttcaccctgg agcggagcca gatcaccaga
     5401 gatcacatgg gccacttact gtatcagctg gtgcagtcgg aaaagctcag caagcaggac
     5461 tttttcaaag gcttttctga aaccttggag ttggcagatg acatggccat tgacatcccc
     5521 catatttggt tgtacctggc tgaactagtc acccccatgt taaaagaagg gggaatctcc
     5581 atgagagaac ttattgtgga attcagcaag ccattacttc ctgttggtag agctggggtc
     5641 ctgctttccg aaatcctgca ccttctatgc agacaaatga gccataagaa agtcagcgcc
     5701 ttatggaggg aggccgacct cagctggaag gactttctac cagaagggga agacgtacat
     5761 aacttccttt tggagcagaa gttggacttc acggagtcag agggaccctg ctcctctgaa
     5821 gcactttcaa agaaagaatt gtctgctgag gagctgtctc agcgcctgga gaaactgatc
     5881 atggaggaca aagcagatga cgagcggatc tttgactggg tggaggtaca aacactgact
     5941 gtgctctgcg gtctctgcag aatggccagt gggttcctca gagttcacat taccagtcct
     6001 ttactaaata ccttttaccc ttcatgcgcc agtggctttt gtgcctgtat gtatacagtg
     6061 tatttgaaat tcagagactg tttctataag cgctcagtca tttttactct ttttatttat
     6121 ttatttattt atttatttat ttatttattt atttatttat tttgtgttag ttttttgaga
     6181 cagggtctca ttatgtgtag tcctggctgc cctggaattt gcaaagtaaa ccaggctggc
     6241 ctccaattca tagagatctt cctgcctctg ctgttgtacg ctgccgtgcc caggcacttt
     6301 cagtcttcaa cacataaaac ctattcagag cacaacccat ccctcggagt ttcattccat
     6361 tagaactcat ttccctgtgc tcgccctaat aaagttaata aggcgaaggc agctgctgtg
     6421 acgtacattg gcgtacattt tccaatcagt gacttgaaaa tttaatcctt ttgccctaag
     6481 tgttagagtc tgccttgttt cgcctgtttg ctgtgttccc ttaagtagca atgcttgtct
     6541 gtgaagagca cttccatgcc tttcatgagg tctcagaagc cgagttgagt ctaacttaaa
     6601 cagggctacc tcttggaagt aagtgtctct tctgctcttg tagaatctcc cttctcccac
     6661 tgtgtctatc agctatgtct attaaacact ccaagccttg agaaagaatg agaccctgac
     6721 aacttgactt acttttctcg atttttctcc ctctttatac agagtaattt ttcttgaagt
     6781 ctttctctta tttttaatca ctgctataga tggatggata gatggatgga tggatggatg
     6841 gatggatgga tggatggatg gatggatggt ctagacttaa tgtgttgttc tcgtgttcgg
     6901 gtgttttgcc tgcatgtgtg tctacaccac ctgtatgcct ggtgccccag gagccagagg
     6961 agtgtcaggt cactgggact ggtgtcacag cctattgtaa acactcatgt aggttctggg
     7021 aatggaaacc cctttccccc agtcctctgc aaaagcagca agttctttac ctactgagcc
     7081 ccgcgtccgc ccttaccatt gctttattca tttgtagact gttgttagca gcccagcatg
     7141 aatacaagga cacaaactct gaggtttctt tgctagagag gggggcggtt tttttgtttg
     7201 ttttttttgt tgttgtt
//
