LOCUS       XM_017598183            5743 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus eukaryotic translation initiation
            factor 4 gamma 1 (Eif4g1), transcript variant X2, mRNA.
ACCESSION   XM_017598183
VERSION     XM_017598183.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598183.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5743
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5743
                     /gene="Eif4g1"
                     /note="eukaryotic translation initiation factor 4 gamma 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 138 ESTs, 1 long SRA read, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 120 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287986"
                     /db_xref="RGD:1306144"
     CDS             494..5293
                     /gene="Eif4g1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 4 gamma
                     1 isoform X1"
                     /protein_id="XP_017453672.1"
                     /db_xref="GeneID:287986"
                     /db_xref="RGD:1306144"
                     /translation="MNKAPQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTP
                     SQPRQGGFRSLQHFYPSRAQPPSSAASRVQSAAPARPGPAPHVYPAGSQVMMIPSQIS
                     YSASQGAYYIPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQSVQQ
                     FPASVAPAPVLMNQPPQIAPKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQT
                     GGSLEPQPNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSP
                     PPILEPGSESNLGVLSIPGDTMTTGMIPISVEESTPISCESGEPYCLSPEPTLAEPIL
                     EVEVTLSKPIPESEFSSSPLQVSTSLVPHRAETHEPNGVIPSEDLEPEVESSTEPAPP
                     PLSACASESLVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVPSAALASIVSP
                     TPPVAPSDTSAAQEEEIEEDEDEDGEAESEKGGEDLPLDSTPVPAQLSQNLEVAAAPQ
                     VAVSVPKRRRKIKELNKKEAVGDLLDAFKEVDPAVPEVENQPPTGSNPSPESEGSAAL
                     PQPEEAEETWDSKEDKIHNAENIQPGEQKYEYKSDQWKPLNLEEKKRYDREFLLGFQF
                     IFASMQKPEGLPHITDVVLDKANKTPLRSLDPSRLPGINCGPDFTPSFANLGRPTLSS
                     RGPPRGGPGGELPRGPQAGLGPRRSQQGPRKETRKIISSVIMTEDIKLNKAEKAWKPS
                     SKRTAADKDRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLK
                     GVIDLIFEKAISEPNFSVAYANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEK
                     DKDDDEVFEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKML
                     TEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEK
                     KTSSRIRFMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKG
                     GDKRRGGPPGPPVNRGLPLVDDGGWNTVPISKGSRPIDTSRLTKITKPGSIDSNNQLF
                     APGGRLSWGKGSSGGSGAKPSDTASEATRPATLNRFSALQQTLPVENTDNRRVVQRSS
                     LSRERGEKAGDRGDRLERSERGGDRGDRLDRARTPATKRSFSKEVEERSRERPSQPEG
                     LRKAASLTEDRGRDPVKREATLPPVSPPKAALAVDEVERKSKAIIEEYLHLNDMKEAV
                     QCVQELASPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYE
                     TLELAEDMEIDIPHVWLYLAELITPILQEDGVPMGELFREITKPLRPMGKATSLLLEI
                     LGLLCKSMGPKKVGMLWREAGLSWREFLAEGQDVGSFVAEKKVEYTLGEESEAPGQRA
                     LAFEELRRQLEKLLKDGGSNQRVFDWIEANLNEQQIASNTLVRALMTTVCYSAIIFET
                     PLRVDVQVLKVRARLLQKYLSDEQKELQALYALQALVVTLEQPANLLRMFFDALYDED
                     VVKEDAFYSWESSKDPAEQQGKGVALKSVTAFFNWLREAEDEESDHN"
ORIGIN      
        1 gccgggaagt gacacgttgt tctttggcac tggccgcgtt gcgcagagct gggaggcggc
       61 ggcggcgagc agggaggagc ccccagcccc gcccggcggc cgaccctcgc ctgccccgag
      121 cgggcttcgc ggccgtcgcc gcccgccttg ctggtgcggc cggactcgcg cttttcctgg
      181 cttgtgttcc cgggaggcct cgggcctctc cagccccgcg cgagtgcccc gcggcaggct
      241 ccgaacccgg tgtccccggg tggggggtgg ggatatcacg gccggagcag ccggcttcat
      301 ttgtgatccg ggagcctggt gccagcgaga cctggaattt ccggtctggt tggtcttggg
      361 ccccgtggag ccaggttgat acccctcacc tcccaacccc aggccttcgg atgcccagaa
      421 cctgtaggcc gcactgtgga cttattctta accgaggggg tgctgggggg accctgatgt
      481 ggcaccaaat gaaatgaaca aagctcccca gcccacaggc cccccacccg ccaggtcccc
      541 tggactccca cagccagcgt ttcccccggg gcagactgca ccggtggtgt ttagcacgcc
      601 tcaagcgaca caaatgaaca cgccttctca gccccgccag ggaggattca ggtctctgca
      661 gcacttctac cctagccggg cccagccccc tagcagtgca gcctcccgag tgcagagtgc
      721 agcccctgcc cgtcctggcc cagctcccca tgtctaccct gctggatccc aagtaatgat
      781 gatcccttcc cagatctcct actcagcctc ccaaggagcc tactatatcc ctggacaggg
      841 gcgttccaca tatgttgtcc caacacagca gtaccctgtg cagccaggag ccccaggctt
      901 ctatccaggt gcaagcccta ccgagtttgg gacctatgct ggagcctatt acccagccca
      961 gagtgtgcag cagtttcctg ctagtgtggc tcctgcccca gttctgatga accagccacc
     1021 ccagattgcc cctaagaggg aacggaaaac tatccgaatt cgagacccaa accaaggagg
     1081 gaaggatatc acagaagaga tcatgtctgg ggcccgtact gcctccacac ccactcctcc
     1141 ccagacggga ggcagtctgg agcctcaacc caatggggag tcgcctcagg ttgctgtcat
     1201 tatccggcca gatgaccggt cacagggagc agccattggg gggcggccag ggctgcctgg
     1261 cccagagcac agccctggca cagagtctca gccttcgtcg ccttctccaa ccccatcacc
     1321 acccccaatt ttggagccgg ggtctgagtc taatcttgga gtcctctcta ttcctgggga
     1381 cactatgaca acggggatga taccaatttc tgtagaagaa tcgaccccca tctcttgtga
     1441 atctggggag ccatattgcc tctctccaga acccactctt gccgaaccca tactggaagt
     1501 agaagtgaca ctcagcaaac ccattccaga atctgagttc tcttccagtc ctctccaggt
     1561 ttccacgtcc ctggtgcctc acagggctga aactcatgag cccaatggcg tgatcccatc
     1621 tgaggatctg gaaccagagg tggagtcaag cacggagcca gctcctcccc ctctttcagc
     1681 ttgtgcttct gaatcgcttg tgcccattgc tccaactgcc caacccgagg agctgctcaa
     1741 tggagccccc tcgccaccag ctgtggacct cagccccgtc agtgagcccg aggagcaggc
     1801 caaggaggtt ccctcagcgg cactggccag cattgtctct cccactccac ctgtggctcc
     1861 ttctgatact tctgctgctc aggaggaaga aatagaagaa gatgaagatg aagatggaga
     1921 agctgagagt gagaagggag gagaggacct ccctctcgat agtactcctg tcccagccca
     1981 attgtctcag aatttagagg tggcagcagc tccccaagtg gcagtgtctg tgccaaagag
     2041 gagacggaaa attaaagagc taaacaagaa agaggctgtg ggtgaccttc tcgatgcctt
     2101 caaggaggtg gacccagcag taccagaggt ggagaatcag cctcctactg gcagcaaccc
     2161 aagcccagag tctgagggca gtgctgcgct cccacagcct gaggaagcag aggaaacctg
     2221 ggactctaag gaagacaaaa ttcacaatgc cgagaacatt cagcctgggg aacagaagta
     2281 cgagtacaag tcagatcagt ggaagcctct caaccttgaa gagaagaagc gttatgatag
     2341 ggagttcctg ctgggctttc agttcatctt tgccagtatg cagaagccag aaggattgcc
     2401 ccatatcact gatgtggtgc tggacaaggc taataaaaca ccacttcggt cactggatcc
     2461 ctccagacta cctggcataa actgtggccc agatttcact ccatcctttg ccaaccttgg
     2521 ccgaccaacc ctcagcagcc gtgggccccc aaggggtggg ccaggtgggg agctgccccg
     2581 agggccgcag gctggcctgg gacccaggcg ctctcagcag ggtccacgga aggaaactcg
     2641 caagatcatt tcctcagtga taatgactga agacataaaa ctgaacaaag cagagaaggc
     2701 gtggaaaccc agtagcaaac ggacagccgc tgataaggat cgaggggagg aggatgctga
     2761 cggaagcaag acccaggacc tgttccgaag ggtacgctcc atcttgaata agctgacacc
     2821 ccagatgttt cagcagctga tgaagcaggt gacacagctg gccattgaca cggaggaacg
     2881 cctcaaagga gtcattgacc tcatcttcga gaaagccatt tcagagccca acttctctgt
     2941 ggcttatgcc aacatgtgcc gctgcctcat ggcgctgaaa gtgcccacta cagaaaagcc
     3001 aacagtgact gtgaattttc gaaaactgtt gttaaatcgg tgtcagaaag aatttgagaa
     3061 agacaaagat gatgatgaag tttttgaaaa aaagcaaaaa gaaatggatg aagctgctac
     3121 ggcagaagaa cggggacgcc tgaaagaaga actagaagag gcccgggaca tagctcggcg
     3181 gcgctcttta gggaatatca agttcattgg ggagctattc aagttgaaga tgttaacaga
     3241 agcaataatg catgactgtg tggtcaaact acttaaaaac catgatgagg agtccctaga
     3301 atgcctctgc cgtctcctca ccacgattgg caaagacctg gactttgcaa aagccaagcc
     3361 tcgaatggat cagtatttca accagatgga aaaaatcatt aaagaaaaga agacctcatc
     3421 tcgcatccgt tttatgctac aggatgtgct tgacctgcgg cagagcaatt gggtgccgcg
     3481 tcgcggggat cagggcccca agacgatcga tcagattcac aaggaggctg aaatggagga
     3541 acacagggag cacatcaagg tccagcagct catggccaag ggcggcgaca agcgtcgggg
     3601 cggccctcca ggccctcctg tcaaccgtgg ccttccactt gtggatgatg gtggctggaa
     3661 tacagtcccc atcagcaaag gcagtcgccc cattgacacc tcacggctca ccaagatcac
     3721 aaagcctggg tccattgatt ctaacaacca gctctttgca cctggaggac gactgagttg
     3781 gggcaagggc agcagtgggg gatcaggagc caaaccctca gacacagcat cggaagctac
     3841 tcgtccagct actttgaatc gcttttctgc tcttcaacaa acattacccg tagagaacac
     3901 agataacaga cgtgttgtac agaggagcag cttaagccgg gaacgaggtg agaaagctgg
     3961 ggaccgggga gaccggctag agcgcagtga gcggggaggt gaccgtgggg accgacttga
     4021 tcgtgccaga acacctgcca ccaagcgaag ttttagcaaa gaagtggagg agcggagtag
     4081 agagcggcca tcccagcctg agggactccg caaggcagct agcctcacgg aggatcgagg
     4141 tcgggatcct gtgaagcggg aagccactct acctccagtg agccctccaa aggctgcgct
     4201 cgctgtggat gaggtggaga ggaagtcgaa ggccatcatt gaagagtatc tccatctcaa
     4261 tgacatgaag gaggccgtgc agtgcgtcca ggagctggct tcaccctccc tgctcttcat
     4321 ctttgtacgg cttggcatcg agtccacgct ggagcgaagc accattgctc gtgagcacat
     4381 ggggagactg ctgcaccagc tactctgcgc agggcacctc tctactgccc agtactacca
     4441 agggctgtat gaaacactag aattggctga ggacatggaa atcgacatcc ctcatgtatg
     4501 gctttacctg gcagaactga taacacctat tcttcaggaa gacggggtac ccatgggaga
     4561 gctctttagg gaaattacga agcctctgag acccatgggc aaagccactt ctttgttgct
     4621 ggagatcctg ggtctcttat gcaagagcat gggtcccaaa aaggtgggaa tgctgtggcg
     4681 agaggctggg ctaagctgga gggaatttct agcagaaggc caagacgttg gctcatttgt
     4741 ggctgaaaag aaggtggaat ataccttggg agaagaatct gaagctcctg gccagagggc
     4801 acttgccttt gaggagctgc gaaggcagct cgagaagctg ctgaaggacg gcggcagtaa
     4861 ccagcgtgtg tttgactgga tagaggccaa cctgaatgag cagcagatag catccaatac
     4921 attagttcga gccctcatga caactgtctg ttattctgca attatctttg agactcctct
     4981 ccgagtggat gttcaagtgt tgaaagtgcg agcaagactg cttcagaaat acctgagtga
     5041 tgagcagaag gagctacaag cactctatgc tctccaggcc cttgtagtga ccttagaaca
     5101 gcctgccaac ctgcttcgga tgttctttga tgctctgtat gatgaggacg tggtgaagga
     5161 agacgccttc tacagctggg agagcagcaa ggaccctgct gaacagcagg gcaagggtgt
     5221 ggcccttaaa tctgtcacag cattcttcaa ttggcttcgt gaggctgagg acgaggagtc
     5281 tgatcacaac tgatggcggg tggggcaggg gacttggagc catggacacg tggatggccc
     5341 agccagccag ccgcctggac tgcagggggg cggcggcggc tgtggcggca gtggcagtgg
     5401 gtgcctgtag tgcgatgtgt cttgagctaa taaagtggct gatgaggcag gatggcttgg
     5461 ggctgcctgg ggcccccctc caggatgctg ccaagtgtct ctctcctccc cccagggcac
     5521 agagatatat atataaagtc ttgaaatttg gtgtgtcttt gcggggggag gggcactacc
     5581 gcctgcctct agggtccttt tttattttct gaaatcactc ttgggactgc cgtcctcgct
     5641 gctgggggca tatgccccag cccctgcacc acccctgctg ctgccagggc agggggaagg
     5701 gttgggcacg gtgcctgtaa ttattaaaca tgaattcaat taa
//
