LOCUS       XM_006248584            5459 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus eukaryotic translation initiation
            factor 4 gamma 1 (Eif4g1), transcript variant X6, mRNA.
ACCESSION   XM_006248584
VERSION     XM_006248584.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248584.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248584.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5459
                     /gene="Eif4g1"
                     /note="eukaryotic translation initiation factor 4 gamma 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 136 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 239 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:287986"
                     /db_xref="RGD:1306144"
     CDS             231..5009
                     /gene="Eif4g1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 4 gamma
                     1 isoform X4"
                     /protein_id="XP_006248646.1"
                     /db_xref="GeneID:287986"
                     /db_xref="RGD:1306144"
                     /translation="MNKAPQPTGPPPARSPGLPQPAFPPGQTAPVVFSTPQATQMNTP
                     SQPRQHFYPSRAQPPSSAASRVQSAAPARPGPAPHVYPAGSQVMMIPSQISYSASQGA
                     YYIPGQGRSTYVVPTQQYPVQPGAPGFYPGASPTEFGTYAGAYYPAQSVQQFPASVAP
                     APVLMNQPPQIAPKRERKTIRIRDPNQGGKDITEEIMSGARTASTPTPPQTGGSLEPQ
                     PNGESPQVAVIIRPDDRSQGAAIGGRPGLPGPEHSPGTESQPSSPSPTPSPPPILEPG
                     SESNLGVLSIPGDTMTTGMIPISVEESTPISCESGEPYCLSPEPTLAEPILEVEVTLS
                     KPIPESEFSSSPLQVSTSLVPHRAETHEPNGVIPSEDLEPEVESSTEPAPPPLSACAS
                     ESLVPIAPTAQPEELLNGAPSPPAVDLSPVSEPEEQAKEVPSAALASIVSPTPPVAPS
                     DTSAAQEEEIEEDEDEDGEAESEKGGEDLPLDSTPVPAQLSQNLEVAAAPQVAVSVPK
                     RRRKIKELNKKEAVGDLLDAFKEVDPAVPEVENQPPTGSNPSPESEGSAALPQPEEAE
                     ETWDSKEDKIHNAENIQPGEQKYEYKSDQWKPLNLEEKKRYDREFLLGFQFIFASMQK
                     PEGLPHITDVVLDKANKTPLRSLDPSRLPGINCGPDFTPSFANLGRPTLSSRGPPRGG
                     PGGELPRGPQAGLGPRRSQQGPRKETRKIISSVIMTEDIKLNKAEKAWKPSSKRTAAD
                     KDRGEEDADGSKTQDLFRRVRSILNKLTPQMFQQLMKQVTQLAIDTEERLKGVIDLIF
                     EKAISEPNFSVAYANMCRCLMALKVPTTEKPTVTVNFRKLLLNRCQKEFEKDKDDDEV
                     FEKKQKEMDEAATAEERGRLKEELEEARDIARRRSLGNIKFIGELFKLKMLTEAIMHD
                     CVVKLLKNHDEESLECLCRLLTTIGKDLDFAKAKPRMDQYFNQMEKIIKEKKTSSRIR
                     FMLQDVLDLRQSNWVPRRGDQGPKTIDQIHKEAEMEEHREHIKVQQLMAKGGDKRRGG
                     PPGPPVNRGLPLVDDGGWNTVPISKGSRPIDTSRLTKITKPGSIDSNNQLFAPGGRLS
                     WGKGSSGGSGAKPSDTASEATRPATLNRFSALQQTLPVENTDNRRVVQRSSLSRERGE
                     KAGDRGDRLERSERGGDRGDRLDRARTPATKRSFSKEVEERSRERPSQPEGLRKAASL
                     TEDRGRDPVKREATLPPVSPPKAALAVDEVERKSKAIIEEYLHLNDMKEAVQCVQELA
                     SPSLLFIFVRLGIESTLERSTIAREHMGRLLHQLLCAGHLSTAQYYQGLYETLELAED
                     MEIDIPHVWLYLAELITPILQEDGVPMGELFREITKPLRPMGKATSLLLEILGLLCKS
                     MGPKKVGMLWREAGLSWREFLAEGQDVGSFVAEKKVEYTLGEESEAPGQRALAFEELR
                     RQLEKLLKDGGSNQRVFDWIEANLNEQQIASNTLVRALMTTVCYSAIIFETPLRVDVQ
                     VLKVRARLLQKYLSDEQKELQALYALQALVVTLEQPANLLRMFFDALYDEDVVKEDAF
                     YSWESSKDPAEQQGKGVALKSVTAFFNWLREAEDEESDHN"
ORIGIN      
        1 cggtcacgtg gggcgctggc tgcgcctgcg gagaagcggt ggccgccgag cgggatctgt
       61 gcggggagcc ggaaatggtt gtggactacg tctgtgcggc tgcgtggggc tcggccgcgc
      121 ggactgaagg agactgaagg ccttcggatg cccagaacct gtaggccgca ctgtggactt
      181 attcttaacc gagggggtgc tggggggacc ctgatgtggc accaaatgaa atgaacaaag
      241 ctccccagcc cacaggcccc ccacccgcca ggtcccctgg actcccacag ccagcgtttc
      301 ccccggggca gactgcaccg gtggtgttta gcacgcctca agcgacacaa atgaacacgc
      361 cttctcagcc ccgccagcac ttctacccta gccgggccca gccccctagc agtgcagcct
      421 cccgagtgca gagtgcagcc cctgcccgtc ctggcccagc tccccatgtc taccctgctg
      481 gatcccaagt aatgatgatc ccttcccaga tctcctactc agcctcccaa ggagcctact
      541 atatccctgg acaggggcgt tccacatatg ttgtcccaac acagcagtac cctgtgcagc
      601 caggagcccc aggcttctat ccaggtgcaa gccctaccga gtttgggacc tatgctggag
      661 cctattaccc agcccagagt gtgcagcagt ttcctgctag tgtggctcct gccccagttc
      721 tgatgaacca gccaccccag attgccccta agagggaacg gaaaactatc cgaattcgag
      781 acccaaacca aggagggaag gatatcacag aagagatcat gtctggggcc cgtactgcct
      841 ccacacccac tcctccccag acgggaggca gtctggagcc tcaacccaat ggggagtcgc
      901 ctcaggttgc tgtcattatc cggccagatg accggtcaca gggagcagcc attggggggc
      961 ggccagggct gcctggccca gagcacagcc ctggcacaga gtctcagcct tcgtcgcctt
     1021 ctccaacccc atcaccaccc ccaattttgg agccggggtc tgagtctaat cttggagtcc
     1081 tctctattcc tggggacact atgacaacgg ggatgatacc aatttctgta gaagaatcga
     1141 cccccatctc ttgtgaatct ggggagccat attgcctctc tccagaaccc actcttgccg
     1201 aacccatact ggaagtagaa gtgacactca gcaaacccat tccagaatct gagttctctt
     1261 ccagtcctct ccaggtttcc acgtccctgg tgcctcacag ggctgaaact catgagccca
     1321 atggcgtgat cccatctgag gatctggaac cagaggtgga gtcaagcacg gagccagctc
     1381 ctccccctct ttcagcttgt gcttctgaat cgcttgtgcc cattgctcca actgcccaac
     1441 ccgaggagct gctcaatgga gccccctcgc caccagctgt ggacctcagc cccgtcagtg
     1501 agcccgagga gcaggccaag gaggttccct cagcggcact ggccagcatt gtctctccca
     1561 ctccacctgt ggctccttct gatacttctg ctgctcagga ggaagaaata gaagaagatg
     1621 aagatgaaga tggagaagct gagagtgaga agggaggaga ggacctccct ctcgatagta
     1681 ctcctgtccc agcccaattg tctcagaatt tagaggtggc agcagctccc caagtggcag
     1741 tgtctgtgcc aaagaggaga cggaaaatta aagagctaaa caagaaagag gctgtgggtg
     1801 accttctcga tgccttcaag gaggtggacc cagcagtacc agaggtggag aatcagcctc
     1861 ctactggcag caacccaagc ccagagtctg agggcagtgc tgcgctccca cagcctgagg
     1921 aagcagagga aacctgggac tctaaggaag acaaaattca caatgccgag aacattcagc
     1981 ctggggaaca gaagtacgag tacaagtcag atcagtggaa gcctctcaac cttgaagaga
     2041 agaagcgtta tgatagggag ttcctgctgg gctttcagtt catctttgcc agtatgcaga
     2101 agccagaagg attgccccat atcactgatg tggtgctgga caaggctaat aaaacaccac
     2161 ttcggtcact ggatccctcc agactacctg gcataaactg tggcccagat ttcactccat
     2221 cctttgccaa ccttggccga ccaaccctca gcagccgtgg gcccccaagg ggtgggccag
     2281 gtggggagct gccccgaggg ccgcaggctg gcctgggacc caggcgctct cagcagggtc
     2341 cacggaagga aactcgcaag atcatttcct cagtgataat gactgaagac ataaaactga
     2401 acaaagcaga gaaggcgtgg aaacccagta gcaaacggac agccgctgat aaggatcgag
     2461 gggaggagga tgctgacgga agcaagaccc aggacctgtt ccgaagggta cgctccatct
     2521 tgaataagct gacaccccag atgtttcagc agctgatgaa gcaggtgaca cagctggcca
     2581 ttgacacgga ggaacgcctc aaaggagtca ttgacctcat cttcgagaaa gccatttcag
     2641 agcccaactt ctctgtggct tatgccaaca tgtgccgctg cctcatggcg ctgaaagtgc
     2701 ccactacaga aaagccaaca gtgactgtga attttcgaaa actgttgtta aatcggtgtc
     2761 agaaagaatt tgagaaagac aaagatgatg atgaagtttt tgaaaaaaag caaaaagaaa
     2821 tggatgaagc tgctacggca gaagaacggg gacgcctgaa agaagaacta gaagaggccc
     2881 gggacatagc tcggcggcgc tctttaggga atatcaagtt cattggggag ctattcaagt
     2941 tgaagatgtt aacagaagca ataatgcatg actgtgtggt caaactactt aaaaaccatg
     3001 atgaggagtc cctagaatgc ctctgccgtc tcctcaccac gattggcaaa gacctggact
     3061 ttgcaaaagc caagcctcga atggatcagt atttcaacca gatggaaaaa atcattaaag
     3121 aaaagaagac ctcatctcgc atccgtttta tgctacagga tgtgcttgac ctgcggcaga
     3181 gcaattgggt gccgcgtcgc ggggatcagg gccccaagac gatcgatcag attcacaagg
     3241 aggctgaaat ggaggaacac agggagcaca tcaaggtcca gcagctcatg gccaagggcg
     3301 gcgacaagcg tcggggcggc cctccaggcc ctcctgtcaa ccgtggcctt ccacttgtgg
     3361 atgatggtgg ctggaataca gtccccatca gcaaaggcag tcgccccatt gacacctcac
     3421 ggctcaccaa gatcacaaag cctgggtcca ttgattctaa caaccagctc tttgcacctg
     3481 gaggacgact gagttggggc aagggcagca gtgggggatc aggagccaaa ccctcagaca
     3541 cagcatcgga agctactcgt ccagctactt tgaatcgctt ttctgctctt caacaaacat
     3601 tacccgtaga gaacacagat aacagacgtg ttgtacagag gagcagctta agccgggaac
     3661 gaggtgagaa agctggggac cggggagacc ggctagagcg cagtgagcgg ggaggtgacc
     3721 gtggggaccg acttgatcgt gccagaacac ctgccaccaa gcgaagtttt agcaaagaag
     3781 tggaggagcg gagtagagag cggccatccc agcctgaggg actccgcaag gcagctagcc
     3841 tcacggagga tcgaggtcgg gatcctgtga agcgggaagc cactctacct ccagtgagcc
     3901 ctccaaaggc tgcgctcgct gtggatgagg tggagaggaa gtcgaaggcc atcattgaag
     3961 agtatctcca tctcaatgac atgaaggagg ccgtgcagtg cgtccaggag ctggcttcac
     4021 cctccctgct cttcatcttt gtacggcttg gcatcgagtc cacgctggag cgaagcacca
     4081 ttgctcgtga gcacatgggg agactgctgc accagctact ctgcgcaggg cacctctcta
     4141 ctgcccagta ctaccaaggg ctgtatgaaa cactagaatt ggctgaggac atggaaatcg
     4201 acatccctca tgtatggctt tacctggcag aactgataac acctattctt caggaagacg
     4261 gggtacccat gggagagctc tttagggaaa ttacgaagcc tctgagaccc atgggcaaag
     4321 ccacttcttt gttgctggag atcctgggtc tcttatgcaa gagcatgggt cccaaaaagg
     4381 tgggaatgct gtggcgagag gctgggctaa gctggaggga atttctagca gaaggccaag
     4441 acgttggctc atttgtggct gaaaagaagg tggaatatac cttgggagaa gaatctgaag
     4501 ctcctggcca gagggcactt gcctttgagg agctgcgaag gcagctcgag aagctgctga
     4561 aggacggcgg cagtaaccag cgtgtgtttg actggataga ggccaacctg aatgagcagc
     4621 agatagcatc caatacatta gttcgagccc tcatgacaac tgtctgttat tctgcaatta
     4681 tctttgagac tcctctccga gtggatgttc aagtgttgaa agtgcgagca agactgcttc
     4741 agaaatacct gagtgatgag cagaaggagc tacaagcact ctatgctctc caggcccttg
     4801 tagtgacctt agaacagcct gccaacctgc ttcggatgtt ctttgatgct ctgtatgatg
     4861 aggacgtggt gaaggaagac gccttctaca gctgggagag cagcaaggac cctgctgaac
     4921 agcagggcaa gggtgtggcc cttaaatctg tcacagcatt cttcaattgg cttcgtgagg
     4981 ctgaggacga ggagtctgat cacaactgat ggcgggtggg gcaggggact tggagccatg
     5041 gacacgtgga tggcccagcc agccagccgc ctggactgca ggggggcggc ggcggctgtg
     5101 gcggcagtgg cagtgggtgc ctgtagtgcg atgtgtcttg agctaataaa gtggctgatg
     5161 aggcaggatg gcttggggct gcctggggcc cccctccagg atgctgccaa gtgtctctct
     5221 cctcccccca gggcacagag atatatatat aaagtcttga aatttggtgt gtctttgcgg
     5281 ggggaggggc actaccgcct gcctctaggg tcctttttta ttttctgaaa tcactcttgg
     5341 gactgccgtc ctcgctgctg ggggcatatg ccccagcccc tgcaccaccc ctgctgctgc
     5401 cagggcaggg ggaagggttg ggcacggtgc ctgtaattat taaacatgaa ttcaattaa
//
