LOCUS       NM_001077670            1836 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus eukaryotic translation initiation factor 3,
            subunit J (Eif3j), mRNA.
ACCESSION   NM_001077670 XM_001080987
VERSION     NM_001077670.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Hinnebusch,A.G.
  TITLE     The scanning mechanism of eukaryotic translation initiation
  JOURNAL   Annu Rev Biochem 83, 779-812 (2014)
   PUBMED   24499181
  REMARK    Review article
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Xu,T.R., Lu,R.F., Romano,D., Pitt,A., Houslay,M.D., Milligan,G. and
            Kolch,W.
  TITLE     Eukaryotic translation initiation factor 3, subunit a, regulates
            the extracellular signal-regulated kinase pathway
  JOURNAL   Mol Cell Biol 32 (1), 88-95 (2012)
   PUBMED   22025682
  REMARK    GeneRIF: Knockdown of eIF-3-alpha enhances the expression of
            differentiation markers in PC12 cell.
REFERENCE   3  (bases 1 to 1836)
  AUTHORS   Zhou,M., Sandercock,A.M., Fraser,C.S., Ridlova,G., Stephens,E.,
            Schenauer,M.R., Yokoi-Fong,T., Barsky,D., Leary,J.A., Hershey,J.W.,
            Doudna,J.A. and Robinson,C.V.
  TITLE     Mass spectrometry reveals modularity and a complete subunit
            interaction map of the eukaryotic translation factor eIF3
  JOURNAL   Proc Natl Acad Sci U S A 105 (47), 18139-18144 (2008)
   PUBMED   18599441
REFERENCE   4  (bases 1 to 1836)
  AUTHORS   Damoc,E., Fraser,C.S., Zhou,M., Videler,H., Mayeur,G.L.,
            Hershey,J.W., Doudna,J.A., Robinson,C.V. and Leary,J.A.
  TITLE     Structural characterization of the human eukaryotic initiation
            factor 3 protein complex by mass spectrometry
  JOURNAL   Mol Cell Proteomics 6 (7), 1135-1146 (2007)
   PUBMED   17322308
REFERENCE   5  (bases 1 to 1836)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC127509.1.
            
            On Nov 15, 2006 this sequence version replaced XM_001080987.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127509.1, FQ226401.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132302, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q35"
     gene            1..1836
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /note="eukaryotic translation initiation factor 3, subunit
                     J"
                     /db_xref="GeneID:691947"
                     /db_xref="RGD:1593338"
     exon            1..142
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..876
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /note="eukaryotic translation initiation factor 3, subunit
                     1 alpha; eIF-3-alpha; eukaryotic translation initiation
                     factor 3 subunit 1"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 3
                     subunit J"
                     /protein_id="NP_001071138.1"
                     /db_xref="GeneID:691947"
                     /db_xref="RGD:1593338"
                     /translation="MAAAAAAAAGDSDSWDADTFSMEDPVRKVAGGGTAGGDRWEGED
                     EDEDVKDNWDDDDDENKEEAEVKPEVKISEKKKIAEKIKEKERQQKKRQEEIKKRLEE
                     PEESKVLTPEEQLADKLRLKKLQEESDLELAKETFGVNNTVYGIDAMNPSSRDDFTEF
                     GKLLKDKITQYEKSLYYASFLEALVRDVCISLEIDDLKKITNSLTVLCSEKQKQEKQS
                     KAKKKKKGVVPGGGLKATMKDDLADYGGYDGGYVQDYEDFM"
     exon            143..246
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            247..301
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            302..393
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            394..508
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            509..670
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            671..744
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
     exon            745..1814
                     /gene="Eif3j"
                     /gene_synonym="eIF3 p35; Eif3s1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccgcgcggg ccaacgagag ccagcccagt gactcacctc tgccgcgcta actcttcgca
       61 gctcttccct tcacacacgc tcacccccgg atcgagatgg cggcggcggc ggcggcggca
      121 gcgggggact cagactcctg ggacgcggac acgttctcta tggaggaccc ggttcggaag
      181 gtcgcgggcg gcggcacagc aggcggggac cgctgggaag gcgaggacga ggacgaggac
      241 gtgaaggata actgggatga tgatgatgat gaaaataaag aagaagcaga agtcaaacca
      301 gaagtaaaaa tttcagaaaa gaaaaaaata gcagaaaaga taaaagagaa agaacggcaa
      361 cagaaaaaaa ggcaagaaga aattaaaaag aggttagaag aacctgaaga atctaaagtg
      421 ctaacacccg aagagcaatt agcagataaa ctccggctaa agaaattaca ggaagagtca
      481 gaccttgaat tagcaaaaga aacttttggt gttaataata cagtttatgg aatagatgct
      541 atgaacccat cttcaagaga tgacttcaca gagtttggaa agttactaaa agataaaatt
      601 acacaatatg aaaaatcact atattatgcc agttttttgg aagccttagt tcgagatgtc
      661 tgtatttcat tggaaattga tgacttgaaa aagattacca actcattgac tgtgctctgc
      721 agtgaaaaac agaagcagga aaagcaaagc aaagccaaaa agaagaagaa aggtgtggta
      781 cctggagggg gattaaaggc caccatgaaa gacgatctgg cagactatgg tggatatgat
      841 ggaggatatg tacaagacta tgaagacttc atgtgacatt ttatcttctg gtgtctcctt
      901 tctgttgccc acaatccctt caacatgtag cacaacctcc tttcctttca gttctgccaa
      961 atgctacaat cagaagtgca gtatctttgt gctggttatt taaccccttg acactcaggt
     1021 gctaatgtgc aaatgaggga acttggatct tgttgccaag gggttaaaat tgggaacctc
     1081 agttgctact aaatcatagt ttaaaaacaa aacaaaccta ataatgttgt cattgttgct
     1141 atccgattcc atagcagcag tcactaaatt ggaaacaaag gttgcaacat gacaaaaaaa
     1201 aaagtgtagt atttaccagc accattcagt aatacagcct taaccatacc tccttgaact
     1261 acttcataac ttgtcaagaa aagcagtttg cagcaagggc atgtgggatg cacctagtat
     1321 taaaattgct ttgtcttaaa attgaggtga ggatattaaa aacttgttgt gaagaagaat
     1381 gtttatctca gagtgaagat actgtggctg aaaagtacta gtttgatact taagatttta
     1441 atgaccaaaa ccctccgact ttgaagctga agaaggtaaa cttctccatt attacagtgc
     1501 aagtgtggac tcaccagtgc attgactgtc tagttactta tcagcctgtt tcttttgatg
     1561 gaggacttca aatgggggag ggaactctgt ttctgtttgc ctgattcaag tgtctgagaa
     1621 acaaatcttg ttcttctagg ctgcaatgga aaaactttta acagggtttt ggcatttcct
     1681 tttctttata aaacatgctc agcaaactgc accagttaac tacagtttgg taaattgtta
     1741 tgttaacaat tatgacatct gcaatgtttt ataaagcaac taatttaata aaatcactat
     1801 tgtgaggact taaaaaaaaa aaaaaaaaaa aaaaaa
//
