LOCUS       NM_001277302            1280 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus eukaryotic translation initiation factor 3,
            subunit F (Eif3f), mRNA.
ACCESSION   NM_001277302
VERSION     NM_001277302.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Lee AS, Kranzusch PJ and Cate JH.
  TITLE     eIF3 targets cell-proliferation messenger RNAs for translational
            activation or repression
  JOURNAL   Nature 522 (7554), 111-114 (2015)
   PUBMED   25849773
REFERENCE   2  (bases 1 to 1280)
  AUTHORS   Hinnebusch AG.
  TITLE     The scanning mechanism of eukaryotic translation initiation
  JOURNAL   Annu Rev Biochem 83, 779-812 (2014)
   PUBMED   24499181
  REMARK    Review article
REFERENCE   3  (bases 1 to 1280)
  AUTHORS   Zeng L, Wan Y, Li D, Wu J, Shao M, Chen J, Hui L, Ji H and Zhu X.
  TITLE     The m subunit of murine translation initiation factor eIF3
            maintains the integrity of the eIF3 complex and is required for
            embryonic development, homeostasis, and organ size control
  JOURNAL   J Biol Chem 288 (42), 30087-30093 (2013)
   PUBMED   24003236
REFERENCE   4  (bases 1 to 1280)
  AUTHORS   Moretti J, Chastagner P, Gastaldello S, Heuss SF, Dirac AM,
            Bernards R, Masucci MG, Israel A and Brou C.
  TITLE     The translation initiation factor 3f (eIF3f) exhibits a
            deubiquitinase activity regulating Notch activation
  JOURNAL   PLoS Biol 8 (11), e1000545 (2010)
   PUBMED   21124883
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1280)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 1280)
  AUTHORS   Zhou M, Sandercock AM, Fraser CS, Ridlova G, Stephens E, Schenauer
            MR, Yokoi-Fong T, Barsky D, Leary JA, Hershey JW, Doudna JA and
            Robinson CV.
  TITLE     Mass spectrometry reveals modularity and a complete subunit
            interaction map of the eukaryotic translation factor eIF3
  JOURNAL   Proc Natl Acad Sci U S A 105 (47), 18139-18144 (2008)
   PUBMED   18599441
REFERENCE   7  (bases 1 to 1280)
  AUTHORS   Masutani M, Sonenberg N, Yokoyama S and Imataka H.
  TITLE     Reconstitution reveals the functional core of mammalian eIF3
  JOURNAL   EMBO J 26 (14), 3373-3383 (2007)
   PUBMED   17581632
REFERENCE   8  (bases 1 to 1280)
  AUTHORS   Damoc E, Fraser CS, Zhou M, Videler H, Mayeur GL, Hershey JW,
            Doudna JA, Robinson CV and Leary JA.
  TITLE     Structural characterization of the human eukaryotic initiation
            factor 3 protein complex by mass spectrometry
  JOURNAL   Mol Cell Proteomics 6 (7), 1135-1146 (2007)
   PUBMED   17322308
REFERENCE   9  (bases 1 to 1280)
  AUTHORS   Yang J, Li G, Zhang F, Liu Y, Zhang D, Zhou W, Xu G, Yang Y and Luo
            M.
  TITLE     Identification of variations of gene expression of visceral adipose
            and renal tissue in type 2 diabetic rats using cDNA
            representational difference analysis
  JOURNAL   Chin Med J (Engl) 116 (4), 529-533 (2003)
   PUBMED   12875716
REFERENCE   10 (bases 1 to 1280)
  AUTHORS   Sizova DV, Kolupaeva VG, Pestova TV, Shatsky IN and Hellen CU.
  TITLE     Specific interaction of eukaryotic translation initiation factor 3
            with the 5' nontranslated regions of hepatitis C virus and
            classical swine fever virus RNAs
  JOURNAL   J Virol 72 (6), 4775-4782 (1998)
   PUBMED   9573242
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FQ213714.1 and FQ230130.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213714.1, FQ212642.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-631               FQ213714.1         1-631
            632-931             FQ230130.1         620-919
            932-1150            FQ213714.1         933-1151
            1151-1280           FQ230130.1         1139-1268
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q33"
     gene            1..1280
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /note="eukaryotic translation initiation factor 3, subunit
                     F"
                     /db_xref="GeneID:293427"
                     /db_xref="RGD:1306112"
     exon            1..400
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1110
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /EC_number="3.4.19.12"
                     /note="eukaryotic translation initiation factor 3, subunit
                     5 (epsilon)"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 3
                     subunit F"
                     /protein_id="NP_001264231.1"
                     /db_xref="GeneID:293427"
                     /db_xref="RGD:1306112"
                     /translation="MASPAVPASVPPATAAAAPAPAVTSAPASAPTPPTPAPAQAATP
                     AAAPAPVSSDPAVATPAAPGQTSTSTPAPAQTPAPSQPGPALPGPFPGGRVVRLHPVI
                     LASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHNESEDEVAVDMEFAKNM
                     YELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTGLQNGRMSIK
                     AYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQV
                     GGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSN
                     INDLLMVTYLANLTQSQIALNEKLVNL"
     exon            401..471
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            472..551
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            552..689
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            690..781
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            782..918
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1032
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1263
                     /gene="Eif3f"
                     /gene_synonym="Eif3s5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctagcctctc tctttctcgg caagatggca tccccagccg taccggctag tgtccctccc
       61 gccactgcag ccgcagcccc ggcgccggcc gtcacctcag ccccggcttc agccccgacc
      121 ccacccacgc cagctccagc acaggctgcg actcccgctg cggcaccggc tcccgtctcg
      181 tctgatcctg ctgtagctac gcctgcagct ccgggccaga cctcaacctc cacgccagcc
      241 cctgcgcaga cgccggcgcc ctcgcagccc gggccggccc tcccggggcc ttttcctggc
      301 ggccgcgtgg tcaggctaca tccagtcatt ttggcctcga tcgtggacag ctatgaacgc
      361 cgcaacgagg gagctgcccg agttatcgga accctgctgg gaactgttga caagcactcg
      421 gtagaagtca ccaactgctt ttcagtgcca cacaatgagt cagaagatga agtggctgtt
      481 gacatggaat ttgccaagaa tatgtatgaa ttgcataaga aagtctcccc aaatgagctc
      541 atcctaggct ggtatgccac agggcacgac atcacagagc actcggtgct gatccatgag
      601 tactacagca gggaggcccc gaaccccatt cacctcacag tggacacggg tcttcagaat
      661 gggcgcatga gcatcaaggc ctatgtcagc actttaatgg gcgtccctgg gaggaccatg
      721 ggagtgatgt tcacccctct cacagtgaag tatgcgtatt atgacactga gcgcattgga
      781 gttgacctca tcatgaagac atgttttagc cccaaccggg tgattggact ctcaagtgac
      841 ttacagcaag tgggaggggc ctcagcccgg atccaggatg ctctaagcac tgtattgcag
      901 tatgctgagg atgtgctgtc tgggaaagtg tctgctgaca acacagtagg ccgcttcttg
      961 atgagccttg tcaaccaagt acccaagata gttcctgatg actttgaaac catgctcaac
     1021 agcaacatca acgacctgct gatggtgacc tacctggcca atctcaccca gtcacagatt
     1081 gccctcaacg agaaacttgt aaacctgtga atgggcccca agagcacttg tgctggtcga
     1141 ggttttcacc acaggcttga gactgaagtg gaggcaaagg gtttctttgt ggtcttgagt
     1201 cacagtgact caatcagctc cttgtgactc caaataaaca gagcttaacc ttttgtaaat
     1261 gaaaaaaaaa aaaaaaaaaa
//
