LOCUS       NM_001167666            1755 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus eukaryotic translation initiation factor 2,
            subunit 3, structural gene Y-linked (Eif2s3y), mRNA.
ACCESSION   NM_001167666 XM_003749248 XM_003753579
VERSION     NM_001167666.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1755)
  AUTHORS   Cortez,D., Marin,R., Toledo-Flores,D., Froidevaux,L., Liechti,A.,
            Waters,P.D., Grutzner,F. and Kaessmann,H.
  TITLE     Origins and functional evolution of Y chromosomes across mammals
  JOURNAL   Nature 508 (7497), 488-493 (2014)
   PUBMED   24759410
REFERENCE   2  (bases 1 to 1755)
  AUTHORS   Pink,C.J., Swaminathan,S.K., Dunham,I., Rogers,J., Ward,A. and
            Hurst,L.D.
  TITLE     Evidence that replication-associated mutation alone does not
            explain between-chromosome differences in substitution rates
  JOURNAL   Genome Biol Evol 1, 13-22 (2009)
   PUBMED   20333173
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158736.1.
            
            On or before Jun 26, 2012 this sequence version replaced
            XM_003753579.1, XM_003749248.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158736.1, GATN01000003.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5756307, SAMEA5760383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1755
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="Y"
                     /map="Yq11"
     gene            1..1755
                     /gene="Eif2s3y"
                     /note="eukaryotic translation initiation factor 2, subunit
                     3, structural gene Y-linked"
                     /db_xref="GeneID:100312984"
                     /db_xref="RGD:2314438"
     exon            1..74
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     CDS             6..1424
                     /gene="Eif2s3y"
                     /EC_number="3.6.5.3"
                     /note="eIF-2-gamma Y; eukaryotic translation initiation
                     factor 2 subunit gamma, Y-linked; eukaryotic translation
                     initiation factor 2, subunit 3 gamma"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 2
                     subunit 3, Y-linked"
                     /protein_id="NP_001161138.1"
                     /db_xref="GeneID:100312984"
                     /db_xref="RGD:2314438"
                     /translation="MAGGEAGVTLGQPHLSRQDLATLDVTKLTPLSHEIISRQATINI
                     GTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKLDDSSCPRPECY
                     RSCGSSTPDEFPSDIPGIKGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIA
                     GNESCPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKEQYEQILAFVQGTVAEG
                     APIIPISAQLKYNIEVVCEYIVKKIPVPLRDFTSEPRLIVIRSFDVNKPGCEVDDLKG
                     GVAGGSILKGVLKVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPG
                     GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKA
                     AKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKH
                     WRLIGWGQIRRGVTIKPTIDDE"
     exon            75..138
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            139..266
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            267..388
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            389..483
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            484..642
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            643..777
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            778..872
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1017
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            1018..1187
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1360
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1732
                     /gene="Eif2s3y"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaagatggc gggcggagaa gccggagtga ctctcgggca gccgcacctt tctcgtcagg
       61 atcttgccac tttggatgtt accaagttga ctccgctatc acatgaaatt atcagcagac
      121 aagccacaat taatataggc acaattggtc atgttgctca tgggaaatct acagttgtaa
      181 aagccatttc tggtgttcat actgtccgat tcaaaaatga actggaaagg aatattacca
      241 taaaacttgg atatgctaat gccaagattt ataagcttga tgactcaagt tgtcctcgac
      301 cagaatgtta cagatcttgt gggagtagta cacctgatga gtttccttca gatatcccag
      361 ggatcaaagg aaacttcaga ctagtcagac atgtttcctt tgttgattgt cctggtcatg
      421 atattttgat ggcaactatg ctgaatggtg cagcagtgat ggatgcagct cttctgttga
      481 tagctggtaa tgaatcttgt cctcaacctc agacttctga acacctggct gccattgaaa
      541 ttatgaagct aaaacatatt ttgattctgc aaaataaaat tgatttggtg aaagaaagtc
      601 aggctaaaga acagtatgag cagatacttg catttgtaca gggtacagta gctgaaggag
      661 ctcctattat tccaatttct gctcagttaa aatacaatat tgaagttgtt tgtgagtata
      721 tagtaaagaa aataccagta cctctaagag actttacttc agaaccccga cttattgtta
      781 ttcgatcttt tgatgttaac aaacctggct gtgaagttga tgatcttaaa gggggtgtag
      841 ctggtggtag tattttaaaa ggagtattaa aggtgggcca agagatagaa gtgagacctg
      901 gtattgtttc taaagacagt gaagggaagc ttatgtgtaa accaatcttt tccaagattg
      961 tgtcactttt tgcagaacac aatgatcttc agtatgctgc accaggtggt cttattggag
     1021 ttggaacaaa aattgaccca acattatgcc gagcagatag aatggttggg caggtccttg
     1081 gtgctgttgg agcattacct gagatattca cagaattaga aatttcctac ttcttactga
     1141 gacgactcct aggtgttcgt acagaaggag acaaaaaagc tgcaaaggtt caaaaactat
     1201 ccaagaatga agtactcatg gtaaacatag gatccttatc tacaggaggc agagttagtg
     1261 cagtcaaggc agatttgggt aaaattgttc tcaccaatcc tgtgtgcaca gaagtaggag
     1321 aaaaaattgc tcttagtcga cgagttgaaa agcactggcg tttaattggt tggggccaga
     1381 taagaagagg agtgactatc aagccaacaa tagatgatga atgaaatgat acatttaggt
     1441 gaaaccagaa atgctttgct taacaatctt aagagatatt ttcatgtcaa aagtaggaaa
     1501 ttaatttcac agcttatcag taagatctat caggttattt tcattttcag tagaaaaaaa
     1561 ttgatgtaaa aatgacaaac ttcttaatct acttgatcta cagttcaaca aatagtatta
     1621 tcattgtagc ttgatagtta acaactattg ctgtgtacca ttgaacttac agtaaagaac
     1681 ttttttttaa tgcttgaagg attgttaccc taataaaaac ttgaaggctg gaaaaaaaaa
     1741 aaaaaaaaaa aaaaa
//
