LOCUS       NM_001017489            2040 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus eukaryotic translation initiation factor 2D
            (Eif2d), mRNA.
ACCESSION   NM_001017489 XM_573446
VERSION     NM_001017489.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2040)
  AUTHORS   Dmitriev,S.E., Terenin,I.M., Andreev,D.E., Ivanov,P.A.,
            Dunaevsky,J.E., Merrick,W.C. and Shatsky,I.N.
  TITLE     GTP-independent tRNA delivery to the ribosomal P-site by a novel
            eukaryotic translation factor
  JOURNAL   J Biol Chem 285 (35), 26779-26787 (2010)
   PUBMED   20566627
REFERENCE   2  (bases 1 to 2040)
  AUTHORS   Skabkin,M.A., Skabkina,O.V., Dhote,V., Komar,A.A., Hellen,C.U. and
            Pestova,T.V.
  TITLE     Activities of Ligatin and MCT-1/DENR in eukaryotic translation
            initiation and ribosomal recycling
  JOURNAL   Genes Dev 24 (16), 1787-1801 (2010)
   PUBMED   20713520
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087701.1.
            
            On Apr 29, 2005 this sequence version replaced XM_573446.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087701.1, SRR8487231.127654.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2040
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..2040
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /note="eukaryotic translation initiation factor 2D"
                     /db_xref="GeneID:498225"
                     /db_xref="RGD:1561765"
     exon            1..254
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     CDS             199..1911
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /note="ligatin"
                     /codon_start=1
                     /product="eukaryotic translation initiation factor 2D"
                     /protein_id="NP_001017489.1"
                     /db_xref="GeneID:498225"
                     /db_xref="RGD:1561765"
                     /translation="MFAKAFRVKSNTAIKGSDRRKLRADVTVAFPTLGTDQVSELIPG
                     KEELNVVKLYAHKGDAVTVYTSGGNPILFELEKNLYPTVYTLWSHPDLLPAFITWPLV
                     LEKLVGGADLMLPGVVVPPTGLPQVQQGDLCAIALVGNRAPVAVGVAAMSTAQMLASG
                     LKGKGISVLHTYQDHLWRSGDKSSPPAIAPLDPTDSCEEKADLGLHGNLRSLSLEGEE
                     ENGQVPNPEASDDPNSRALSQDSVDGKPLQEQMDELLEQCFLHALKSRVKKADLPLLT
                     STLLGSHMFSCCPEGQQLDIKKSSYKKLSKFLQHMQQEQIVQVKELSKGVESIVAVDW
                     RHPRITSFIVPEPSLASQTVQEGSREKPYLPPDIKSLYCVPANMTQLFLESGHKKGST
                     LEGSEVRRIITDYAKRNNLVDADNRNLVKLDPILCDCILEKNEQHLVMKLPWDSLLTR
                     CLKNLQPAYQVTFPGQEPIIKKGKLCPIDITLVLKTYNKKVTVVRNLETYGLDPCSVA
                     AILQQRCQASTIVSPAPGAKDSLQVQVQGNQIHHLGQLLLEEYRLPGKYIQGLEKAPK
                     PGKK"
     exon            255..445
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            446..529
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            530..620
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            621..728
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            729..943
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1061
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1107
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1211
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1212..1361
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1362..1451
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1452..1547
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1548..1668
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1669..1843
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
     exon            1844..2013
                     /gene="Eif2d"
                     /gene_synonym="Lgtn"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggactag gaccggccag catcaggtct agggctgtaa agctacgtgc cggggttcct
       61 agccggctgc tatttggcgc cgagtcctca gcatggctgc ctccagggtt gagggccggg
      121 gagctgccac accctcgttt tgttgaccgc ccctggcgtc tgtgctcttc ttgtctttcc
      181 tgggccgctc gagcagacat gttcgctaag gcctttcggg tcaagtccaa cacagccatc
      241 aagggatcgg acaggagaaa acttcgggcc gatgtgacag ttgcttttcc caccctcgga
      301 acagatcagg tctctgaatt gatccctgga aaggaagaac taaacgttgt gaagttgtac
      361 gctcacaaag gggatgcagt gactgtgtac acgagtggtg gtaaccccat cctatttgaa
      421 ctggagaaaa acttgtatcc aacagtgtac acactgtggt cccatcctga tcttctacca
      481 gcctttataa catggcctct ggtactcgaa aaactggtcg ggggagcaga tttgatgctg
      541 cccggggtag tggtgccccc tactggtctg cctcaggtac agcaaggcga cctctgcgcc
      601 attgccttgg tggggaacag agcgcccgtt gcagtcggag tagctgccat gtccacagct
      661 cagatgctgg cttcaggcct gaagggaaaa ggcatctctg tgctccacac ttatcaggac
      721 cacttgtgga gatctggaga caagtcctct ccacctgcca ttgccccact ggatcccaca
      781 gatagctgcg aagagaaggc ggaccttggt ctgcacggaa acctgaggag tctgagcctg
      841 gaaggagaag aggaaaatgg gcaggttcct aacccagaag cctctgatga ccccaactcc
      901 agggccctga gccaggactc cgtggatggc aagccccttc aggagcaaat ggatgagctg
      961 ttagagcagt gcttcctgca tgctttgaag agtcgagtca aaaaagctga cctccctttg
     1021 ctcaccagca cgctccttgg cagtcacatg ttctcctgct gtcctgaagg acagcaactg
     1081 gatataaaga agtcaagcta taaaaagctc tctaagttcc tgcagcacat gcagcaggag
     1141 cagattgtcc aagtcaagga gctgagcaaa ggggtggaga gcattgtggc tgtagactgg
     1201 aggcacccga ggatcacatc cttcatcgtc cccgagccgt ccctggcttc ccagactgtc
     1261 caggaaggta gcagggaaaa gccctatctc cctccagata taaaatccct ctactgcgtc
     1321 cctgccaaca tgacccagct cttcctggag tctggccaca agaaggggag caccctcgag
     1381 ggcagtgagg tccgaaggat catcactgac tatgccaaga gaaacaacct ggtggatgca
     1441 gacaacagga atctggtgaa gttggatccc atcttatgtg actgtatctt agagaaaaat
     1501 gagcagcact tggtcatgaa gcttccgtgg gactctctcc tgaccaggtg tttgaaaaat
     1561 ctgcagcctg cctaccaagt gacatttcct ggccaggaac ccattataaa gaaagggaaa
     1621 ctctgtccaa ttgatatcac ccttgtactg aagacttata ataaaaaggt gactgtggtc
     1681 cggaacttgg agacctatgg tctagatcca tgctcagtgg ccgccattct ccagcagcga
     1741 tgtcaggcca gcaccatcgt ctctcctgcc cctggggcca aagatagtct gcaggtgcag
     1801 gtccagggaa accagatcca ccacctcggc cagctattgc ttgaagagta tcggctccct
     1861 ggaaaataca tccaaggcct agaaaaggcc cccaaacctg gcaagaagtg acagactcat
     1921 tttatgcagt ggatcccatg ggaacccagg ttctgagctg gtaactgata tgagcatttt
     1981 caacttttgc aaataaaaac tgtaattctt tacaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
