LOCUS       NM_001129997            5625 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus EH domain binding protein 1-like 1 (Ehbp1l1),
            transcript variant 2, mRNA.
ACCESSION   NM_001129997
VERSION     NM_001129997.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5625)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 5625)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CH473953.1.
            
            Transcript Variant: This variant (2) represents the longest
            transcript and encodes the longest isoform (2).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..5625
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..5625
                     /gene="Ehbp1l1"
                     /note="EH domain binding protein 1-like 1"
                     /db_xref="GeneID:309169"
                     /db_xref="RGD:1563823"
     exon            1..363
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             260..5359
                     /gene="Ehbp1l1"
                     /note="isoform 2 is encoded by transcript variant 2; EH
                     domain-binding protein 1-like protein 1; tangerin"
                     /codon_start=1
                     /product="EH domain-binding protein 1-like protein 1
                     isoform 2"
                     /protein_id="NP_001123469.1"
                     /db_xref="GeneID:309169"
                     /db_xref="RGD:1563823"
                     /translation="MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVW
                     TRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYETKEWTFII
                     ENESKGQRKVLATVDVNLAQHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLRE
                     GRATDDDMQSLASLMSVKPSDVGNLDDFAESDEEEANGPGAPEVRAGGPQSDRSRELK
                     TLCEEEDEGHIQPQQAAARPSSAEDTSCAPVSAPAPLARAFRGQGSEPAAIAGGQVGP
                     ETPRPPPSPPETRSTGQPDQNMVPTPAPRLRKGSDAPWSPVPCRGDEIPNTSEDPPTG
                     MGSSGETQTQISSQKGTEAHGARPEPDIEVRGSKDDLGGDRSKVEEGDTGDMPGPSGA
                     ENREKGTKKSYTTAGEAEESSKRHQVDAEQKSKVQHRATEGPEAAGLVPKARPGETPE
                     APPRSAQRRMGVRTQEEAPSDLNPPPAEPEEHLGDLRDARPAGQEKESTEVRGRAPAI
                     GRTGLEQGPSAGAAGAGPQVSCFQGVPSVGQGVVSRDQKAQEAEVGEPRVLETEAEWV
                     PWEVIGTPETNAGSLESPDIETGTAKSEILKAQESEAARSEVLESEATGTAESEVLRT
                     QDKEIVVLGMLRTGAEIREPKEFGIQKTEVGGSAVPDTKTVTAETKTLEAQGIADGGA
                     CVLKIQAEVLGTQKTEAGEAETGILQTRKVAAEGWQAPVVEAEMVESDELGMQETEVE
                     IGRIPRVETETAGTETLGVHRIAFEDSGSPQMQSTIVGDQEIDVSVTETAEDAILGTQ
                     ELAAGHGVLVIEAELPESKIDRSLETEERGLGVLDTGTAETKISGTPERAPGVCKVLG
                     IGAEVARVLEEEAGSSEVPETEAEETETRGAKELCGSSAALRVVSGRPESKILGAQKT
                     EVGGTGLSQAEVRGTESEISSEGSGGPELEDKLEESEILGAQERKTEARELSEVETVN
                     PQFTGTQKDLEITESEAKTVKSGIPEAQETEAKTAWTQEIEPGDAGVSRPEAEAPRAQ
                     WTEPIVLESGEVKTDILGVQKPGAWGALKCEALGVPMTKQGFSGAKEVVPEVSRVQEP
                     ETKVLGIEEAKSWTLGQQKAEREGFESPENKSDIFEAQETESGVLGTMKGKEADESLK
                     EASLNKAQVASEAGAGVPRPSGASSPEEPEEDRRLPGSQAPSALVSSSQSLLEWCQEV
                     TKGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYFSLDPLNIKQNNKQAFDGFAAL
                     GVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGGGGSGTYRVGNAQ
                     PSLPDCLNAGDLAQRLREHGAEASTEPKEAVNRGTGAIPKVASRDTDLGSSSKDGEAE
                     VAQEAVPQEASSDGPRARSSTSPVVPTEGLVNGVGAPASVSGVRLRRSSVNGEAGPVP
                     PPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDQDSGTAVGAGPAGSGAVEGPNPDS
                     SLDSGTLTATAPQQPPSGNPPTEESSPNPGEEAGQQRFQDTSQYVCAELQALEQEQGQ
                     IDGRAAEVEKQLRSLMESGANRLQEELLIQEWFTLVNKKNALIRRQDQLQLLIEEQDL
                     ERRFELLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIA
                     LEEDERLERGLEQRRRKVSRQLSRRERCTLS"
     exon            364..421
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            422..517
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            518..571
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            572..750
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            751..893
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            894..962
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1125
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1126..3814
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            3815..3972
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            3973..4021
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            4022..4720
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            4721..4790
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            4791..4846
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            4847..4970
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            4971..5070
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            5071..5144
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            5145..5259
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
     exon            5260..5625
                     /gene="Ehbp1l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcgcaatt cggagctccg accagctcga cgcgccgcga cggcccggca gactcagcca
       61 gcccaccagg cggaccccgg cggccacccc aacaagcaca gcctaggtcc gaacctcaga
      121 cgtatcttct cggacggggc ggacagatca ggcgacatag aaaggggctc cagagaccat
      181 ggggaccctg gctgggccag cagtggtggg cgagagggag tcccgagcct gagaagaggt
      241 ctgggagagc tgctcggcca tgacttcagt gtggaagcgc ctgcaacggg tgggcaagcg
      301 ggccgccaag ttccagtttg tggcgtgtta ccatgaactg gtgttggagt gcaccaaaaa
      361 atggcagccc gacaagctgg tggtggtatg gactcggagg aaccgacgta tctgctccaa
      421 ggcccacagc tggcagcctg gcatccagaa cccttaccgt ggcactgtgg tgtggatggt
      481 tcctgagaac gtggacatct ctgtgacctt gtacagggac cctcacgtgg accagtatga
      541 aaccaaagaa tggactttta ttattgaaaa tgaatccaaa ggacagcgga aggtactggc
      601 cacagttgat gtgaacctgg cccaacatgc ggggcccgtg cccgctcagg ttccacttcg
      661 attgcggctg aagcccaagt ctgtgaaggt agtgcatgct gaactgagcc tcaccctttc
      721 tggggtgttg ctgcgtgaag gccgtgccac ggacgatgat atgcagagtc tggccagcct
      781 catgagtgtg aagcctagtg atgtgggaaa cttggatgac tttgccgaga gtgatgagga
      841 ggaagccaat ggccctgggg ctcctgaggt ccgggctgga ggtccccagt cagatcggtc
      901 tcgagagctg aagacactct gtgaggaaga agatgaaggg cacattcagc cccagcaggc
      961 agctgccagg ccctctagtg ctgaagacac cagctgtgcc cctgtgagtg cccctgcgcc
     1021 cctggcaagg gccttccggg gccaagggtc agaaccagct gctatagccg ggggccaggt
     1081 ggggcctgaa accccaaggc ccccaccatc cccaccagag acaaggtcaa ctgggcagcc
     1141 agatcagaac atggtcccca ccccagcccc tcggctccgg aaaggctctg atgcaccctg
     1201 gtccccagtc ccctgcaggg gggatgagat ccccaatacc tcagaggatc ctccaacagg
     1261 aatgggctct tctggggaga cccagaccca aataagctct cagaaaggga cagaggccca
     1321 tggagccagg ccagaaccag acattgaggt cagaggctcc aaagacgatc tgggaggaga
     1381 cagatccaaa gttgaagagg gggacactgg ggacatgcca gggcctagtg gggcagagaa
     1441 tagagagaag ggcactaaga agtcgtacac cacagctggc gaggctgaag agagctcaaa
     1501 acgtcatcaa gtagatgctg agcagaagtc aaaggtacaa catagagcca cagagggacc
     1561 agaggctgca gggctggtgc ccaaggcaag acctggggaa actcctgagg ccccacctag
     1621 gagtgctcag aggagaatgg gggttaggac tcaggaagag gctcccagtg acctgaaccc
     1681 ccctccagct gagcctgaag agcatctagg ggatctcagg gatgccaggc cggcaggcca
     1741 ggagaaagaa agcacagagg tgaggggtag agcccccgcc attgggagga caggcctgga
     1801 gcagggcccc tctgctggag cagctggtgc tgggccccag gtgagctgtt ttcagggagt
     1861 cccgtcagtt ggccaagggg tggtatctag agatcagaag gcccaggagg cagaagttgg
     1921 ggagccaagg gttctagaaa cagaggctga gtgggtgcca tgggaggtta tagggacacc
     1981 agagacaaat gctggctcac tagagtcccc agatatagag actggcacag caaaatctga
     2041 aatattgaag gcccaagagt cagaagcagc aaggtcagag gtcctggagt cagaggctac
     2101 tggaacagca gagtctgagg tgttgaggac tcaggataaa gagattgtgg ttctggggat
     2161 gctaaggaca ggagctgaga tcagggagcc taaggaattt gggatccaga aaacagaagt
     2221 tggaggttct gcagttccag atactaaaac agtaacggca gaaactaaga cattagaagc
     2281 ccaggggata gcagatggtg gggcctgtgt gttgaagata caggctgagg tattgggaac
     2341 ccagaagaca gaggcagggg aggcagaaac tggaatactg cagacccgga aggtagcagc
     2401 tgaaggttgg caggctccag tggtggaggc agagatggtg gagtctgatg aattggggat
     2461 gcaggagaca gaggtggaga ttggtcggat tccaagagta gagactgaaa cagcaggaac
     2521 cgagacattg ggggtccaca gaatagcatt tgaggattct gggtccccac agatgcaatc
     2581 tacaatagta ggggaccagg agatcgatgt ttcagtgaca gagacagcag aagatgctat
     2641 actggggacc caggagctag cagcaggtca tggagtactt gtgatagaag ctgagctacc
     2701 agaatccaag attgacaggt ccctggagac agaggaaaga ggtttagggg ttctagatac
     2761 tgggacagca gaaaccaaga tctcagggac accagagaga gcaccagggg tttgtaaggt
     2821 gctgggaata ggagctgagg tagccagggt cttggaagag gaggctggct cttcagaagt
     2881 cccagagaca gaagctgaag aaactgagac acggggagcc aaggagctgt gtgggagttc
     2941 tgcggcactg agagttgtgt ctgggagacc agaatctaag atattagggg cccagaagac
     3001 agaggtggga ggcactgggc tgtcacaggc agaggttaga gggacagagt cggaaatatc
     3061 atctgagggt tcagggggtc cagagttgga agataagttg gaagagtctg agatactggg
     3121 ggcccaggag agaaaaacag aggctcggga gctctcagag gtagagacag tgaatcctca
     3181 gttcactggg acccagaagg acttggagat cacagaatca gaagctaaga cagtaaagtc
     3241 cgggattccg gaagcccagg agacagaagc aaagacagct tggacccaag aaatagagcc
     3301 aggggatgct ggggtctcca ggccagaggc cgaggcaccg agggcccagt ggacagaacc
     3361 tatagttttg gagtcagggg aggtaaagac tgacattttg ggggtccaga aacctggggc
     3421 ttggggagct cttaaatgtg aggccttagg agtccctatg actaagcaag ggttttctgg
     3481 ggccaaggaa gtagtgccag aggtatccag agtacaagag ccagaaacta aagttttggg
     3541 gatagaagaa gccaaatctt ggactttggg gcaacagaaa gcagagaggg aggggtttga
     3601 atctccagag aataaatctg atatttttga ggcccaggaa acagaatctg gggtcttggg
     3661 aaccatgaag gggaaagaag ccgatgaaag cctcaaggag gccagcctga ataaggcaca
     3721 agtggccagt gaggcagggg ctggggtacc caggccctca ggggcctctt ccccagagga
     3781 gcctgaagag gacaggaggc tgccgggcag ccaggcacca tctgccctgg tcagctccag
     3841 ccagtccctg ttggagtggt gccaagaggt caccaagggc taccgtggtg tctgcatcac
     3901 caatttcacc acatcctggc gcaacggcct ggccttctgt gctattttac atcgattcta
     3961 cccagacaag attgactatt tctcccttga tccactcaac atcaaacaga acaacaagca
     4021 ggcttttgat ggcttcgctg ccctgggcgt gtctcggctg ctcgagccag cggacatggt
     4081 gcttctgtcc gtacctgaca agctcatcgt catgacgtac ctgtgccaga tccgtgcctt
     4141 ctgcactggg caggagctgc agctggtgca actggagggc ggcggtggct ctggcactta
     4201 tcgtgtggga aacgcccagc cgagcctgcc ggactgccta aacgcaggag acctggcgca
     4261 gcggctacgc gaacatgggg ctgaagcgtc tacagagcct aaggaggctg tgaaccgcgg
     4321 gactggggca atacccaagg tagcctccag ggacacggac ctgggctcct cctctaagga
     4381 tggggaggcc gaggttgccc aggaagcagt ccctcaagag gcatcctccg acggccctag
     4441 agccaggtcg tccacatccc ccgtggtccc cacagagggg ctggtgaatg gagttggggc
     4501 gccggcttct gtgagtggtg tgagactgag acggtcctcg gtcaatgggg aggctgggcc
     4561 agtacctcca ccccgagcac atggctcttt ctcccacgtg cgtgacgctg atttgctaaa
     4621 gaagaggcga tccagactaa ggaatagcaa ctccttctcg gtggatgacc aggattctgg
     4681 aactgcagtt ggagcagggc ctgcaggatc tggggctgtg gaaggcccaa accctgactc
     4741 cagccttgac tctggcacac tcacagccac agccccacag cagccaccca gtgggaaccc
     4801 tcctactgag gaatcatccc ctaaccccgg ggaagaggct ggccaacaac ggttccagga
     4861 cacaagtcag tacgtgtgtg cagagctgca agccctggaa caggagcagg gacagataga
     4921 tgggagggcc gctgaggtgg agaagcaact gaggagcctc atggaatcag gtgccaacag
     4981 gctgcaggag gagttgctga tccaggaatg gttcaccctg gtcaacaaga agaacgcgct
     5041 cattcggagg caggaccagc tgcagctgct catcgaggag caggacttgg agcggagatt
     5101 cgaactgctg agccgtgagt tgcgggccat gctggccatt gaagagtggc agaaaacagt
     5161 tgcacagcag caccgggagc aactcttgtt ggaggagctg gtatcactgg tgaaccagag
     5221 ggatgaactg gtccgggacc tggaccagaa ggaacgaatc gctctggagg aagatgagcg
     5281 cctagaacga ggcctagagc agcggcgtcg aaaggtgagc cggcagctga gcaggcggga
     5341 acgctgcacc ctgagctgag cctcctgtcc agttagtcgt ggaccctcct cgtcactccc
     5401 ccgcctgtac agcggaggac aggccccccc atgctcctcc agcgggcgga agcaagaccg
     5461 atcagattct cggactggag cagtgagcct accaggcagt atttatttat ccgagtgtat
     5521 gtgagtgtgt ggcggtggcc aggatccccc aagcaaggga tggtgtggga acgacaccca
     5581 cgtcctcctt cccttctgaa gggagcaata aagttgaact acaac
//
