LOCUS       XM_006232013            4696 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EGF-like, fibronectin type III and
            laminin G domains (Egflam), transcript variant X1, mRNA.
ACCESSION   XM_006232013
VERSION     XM_006232013.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232013.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006232013.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4696
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4696
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /note="EGF-like, fibronectin type III and laminin G
                     domains; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 12 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:365691"
                     /db_xref="RGD:1306592"
     CDS             570..3611
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /codon_start=1
                     /product="pikachurin isoform X1"
                     /protein_id="XP_006232075.1"
                     /db_xref="GeneID:365691"
                     /db_xref="RGD:1306592"
                     /translation="MDLISTFLLHFLLLACSLPPGAVSLRTALRKSGKVGPPLDIKLG
                     ALNCTAFSIQWKTPKRSGSSIVGYTVFYSELGSDKSLREQSHNVPVGQDTLITEEVIG
                     DLKPGTEYRVSIAAYSQTGKGRLSFPRHVTTLSQDSCLPPEAPHQPHVLVVSDSEVAL
                     SWRPGENEGSAPIQSYSVEFIRPDFDKSWTIIQERLQMDSMVIKGLDPDTNYQFAVRA
                     MNAYGFSLRSQPSNTIRTLGPGEAGSGRYGPGYITDTGVSEDDDASEDELDLDVSFEE
                     VKPLPATKVGNKKSKKTSVSNSEMDSRLAQPTSASLPETTVAVPPTPAQRKGKNSVAV
                     MSRLFDMSCDETLCSADSFCVNDYAWGGSRCHCNLGKGGEACSEDIFIQYPQFFGHSY
                     VTFEPLKNSYQAFQITLEFRAEAEDGLLLYCGESEHGRGDFMSLALIRRSLHFRFNCG
                     TGMAIIISETKIKLGAWHSVTLYRDGLNGLLQLNNGTPVTGQSQGQYSKITFRTPLYL
                     GGAPSAYWLVRATGTNRGFQGCVQSLAVNGKKIDMRPWPLGKALNGADVGECSSGICD
                     EASCINGGTCAAIKADSYICLCPLGFRGRHCEDAFTLTIPQFRESLRSYAATPWPLEP
                     QHYLSFTEFEITFRPDSGDGVLLYSYDTSSKDFLSIIMAAGHVEFRFDCGSGTGVLRS
                     EDTLTLGQWHDLRVSRTAKNGILQVDKQKVVEGMAEGGFTQIKCNTDIFIGGVPNYDD
                     VKKNSGILHPFSGSIQKIILNDRTIHVRHDFTSGVNVENAAHPCVGAPCAHGGSCRPR
                     KEGYECDCPLGFEGLNCQKECGNYCLNTITEAIEIPQFIGRSYLTYDNPNILKRVSGS
                     RSNAFMRFKTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIMVNG
                     SFSDGRWHRVKAVRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALHT
                     NRQYMRGLVGCISHFTLSTDYHISLVEDAVDGKNINTCGAK"
ORIGIN      
        1 ttaaactggg tgcaagccac ctagtggggg aagaagagtc cagccaacaa taccgaggca
       61 ccccaaaagt tcagggttag gatccagtgg aggaccctgg gcccacagtc taagtcaagg
      121 aactccggcg gagtgttgaa gtcggtccca ccccggcccc caatctaggt cacccgcggg
      181 gaagggctga gctgggggct gtctgcgcgg gaggtgggcg cggagtgaat tgattcagac
      241 cctgcccctc gctcttccac tagattgtaa ttccatctcc tgcgggtcga gccgccctcc
      301 ctcaggcggc cagtgcgtcc ctcccctcgg cttccagcgt ccactcccca gccccgaaaa
      361 gccttgccgc tgagagcccg ctccactcca agcacgccag cctcccagct gctgccttgc
      421 ctcctcggac tcccgagtgg ctcctggttc agttccctgg gtcccccacc ttctcatcct
      481 cgcgtcactg gcgtcccccg cgtccccagg agacgccctt tccccgcgcg cccgggactt
      541 ggtgaaactt tgcagacacg gtcggtgaga tggatttaat ctcaaccttc ttgctccatt
      601 tcttgctcct ggcctgcagc ctcccacccg gcgccgtgtc actccgaacc gctctgcgaa
      661 aatcaggcaa ggtgggacct cctcttgaca tcaaactggg agccttgaac tgtacagcct
      721 tcagcatcca gtggaaaaca ccaaagcgtt ctggtagctc cattgttggg tacacagtat
      781 tttactctga gcttggttca gataagtccc tccgggaaca gtcacataat gtacctgttg
      841 gccaggatac cctaatcact gaggaagtga ttggagattt gaagccaggc actgaatatc
      901 gagtgagcat agcagcctac agccagactg gcaaagggag gcttagcttc cctcggcatg
      961 tgaccacttt gtctcaagat tcctgcctgc cccctgaagc accccatcag ccacatgtcc
     1021 ttgtggtttc tgattctgaa gtggccctat cttggagacc gggagagaat gaaggaagtg
     1081 ccccaattca gtcctactct gtggaattca ttaggccaga ttttgacaag agctggacca
     1141 taatccaaga gcgcctgcag atggactcca tggttatcaa aggccttgat ccagacacca
     1201 actaccagtt tgctgtgaga gccatgaatg cctatggctt cagtctgcgc agccagccca
     1261 gcaacaccat ccgaactctg ggtcctgggg aggctggaag tggccgctat ggacctgggt
     1321 atatcaccga taccggcgtg agtgaggatg acgatgcatc agaagacgag ctagatctgg
     1381 atgtctcctt tgaggaggtt aaaccacttc ctgctaccaa agttgggaat aagaagtcca
     1441 agaagacttc tgtctccaac tcagagatgg actccagact tgcccaacct acctcagcat
     1501 ctctccctga aactacagtg gctgtgccac ccacgccagc ccaacggaag gggaagaaca
     1561 gtgtggccgt gatgtcaagg ctctttgaca tgtcctgtga cgaaaccctc tgttcagctg
     1621 acagcttctg tgtcaatgac tacgcctggg gaggctcacg atgccattgc aacctgggca
     1681 aaggaggcga ggcctgctca gaagatatct ttattcagta tccacagttc tttggccact
     1741 cctatgtaac ctttgagcct ctgaagaact cttatcaggc atttcagatt actctggaat
     1801 tcagggcaga ggcagaagat ggcttactgc tctactgtgg ggagagtgaa catgggagag
     1861 gagacttcat gtccctggct ctcatccgac gctccctcca cttcaggttt aattgtggaa
     1921 ctgggatggc catcatcata agtgagacca aaatcaagct tggggcctgg cactcggtga
     1981 cactgtatag agatgggctg aacgggctgc tgcagttgaa caatggcacc ccagtaacag
     2041 gccagtccca gggtcagtac agtaaaatta ccttccggac acctctgtac cttggtggtg
     2101 ctcccagtgc ttactggctg gtcagagcga cggggacaaa tcgtggcttc caaggctgtg
     2161 tgcagtcact tgctgttaac gggaagaaga ttgacatgag gccctggcca ctggggaaag
     2221 ccctcaacgg agctgatgtt ggggagtgca gcagtgggat ctgtgatgaa gcctcctgca
     2281 tcaacggggg cacctgcgca gccatcaagg ccgactccta catctgcctc tgtccccttg
     2341 ggttcagagg tcgacactgt gaagatgcat ttaccctgac cattcctcag ttcagagagt
     2401 cgctgaggtc ctacgctgcc acgccctggc ccctggagcc tcagcactat ctttctttca
     2461 ccgagtttga gatcacattt cggccagact ccggggatgg ggtccttttg tacagctacg
     2521 acacaagcag caaggacttc ctgtccatta ttatggctgc aggccatgtg gaattccgct
     2581 tcgactgtgg ttctgggacc ggagttctca ggagtgagga taccctcacc ctaggccaat
     2641 ggcatgacct acgcgtgtct cgcacagcga agaatgggat cttacaggtg gacaagcaga
     2701 aggtagtaga aggaatggca gagggaggct tcacccagat taagtgtaat acagacattt
     2761 ttattggcgg agtcccaaat tacgatgatg tcaagaagaa ctcgggtatc ctccatccat
     2821 ttagtgggag catccagaag atcatcctaa atgaccggac catccatgtg aggcacgact
     2881 ttacatctgg tgtgaatgtg gagaacgcag cgcacccctg tgtgggggcc ccctgtgccc
     2941 atgggggcag ctgtaggccc aggaaggagg gttatgagtg tgactgtccc ttgggcttcg
     3001 aaggcctgaa ctgccagaaa gagtgtggaa actactgcct caatacgatt acagaagcca
     3061 ttgagatccc acagttcatc ggtcggagtt acctgaccta tgacaaccca aatatcctca
     3121 agagggtgtc cggatcaagg tcaaatgctt tcatgaggtt taagacaacc gccaaggacg
     3181 gcctgttgct gtggaggggg gacagcccca tgagacctaa cagcgacttc atttccctgg
     3241 gtcttcggga tggagccctg gtgttcagct acaacctggg cagtggtgtg gcttccatta
     3301 tggtgaatgg ttccttcagc gatggccggt ggcaccgagt caaggctgtc agggatggcc
     3361 agtctgggaa aattacggtg gatgactatg gagccagaac aggcaagtca cctggcatga
     3421 tgaggcaact taacatcaat ggggctctgt atgtgggtgg aatgaaggaa attgctctgc
     3481 acacgaacag acagtacatg cgaggccttg tgggctgcat ctcccatttc acattgtcca
     3541 ccgattacca catttccctt gtggaagacg ctgtggatgg gaagaacatc aacacttgtg
     3601 gggctaagta acaccagctg gccttgccca agggacattg acagcctcta tcctgaaatc
     3661 ccaggggccc agagaccctg cctgatgctg cactcagagg tcttgaaatc aggtgtgttt
     3721 actttcatcg aggacaaagt gcgccctggt gagagccaag actgaaggcc ctgagtggcc
     3781 ttctctgcta aagccctgtg gaccaaaccc aatggactac tgtggatagg aagcattgga
     3841 ctttgtcact cgacgtatag agtctgtgag agatggtatc agtgcacgct ctggaaaaac
     3901 tctgctgtag ctcaatggct gtgctgtatt agagagagcc agactgggtg agaaagagtg
     3961 aatgagtgaa tgagagagag agagagagag agagagagag agagcacaga gataagcaga
     4021 gagagacaga cacccctctg aataatatta aaatattttt gctcttcctt gacttatgac
     4081 gctagcagaa tgactgtgtg accctgaatt tcatacttcc aatcttggtc tatggattgt
     4141 gtagattaac cccttccatg cctcgctggc tgactcaatg tgctctgtct agtccgtgaa
     4201 aataaaagtc agggggcaaa ttaaacatat aataataatc agactgtgac ctccttcccc
     4261 caagcttacc tctaaggcaa atattctttt tttatgatgc agagtgaaga aggtgggtcc
     4321 cctgattttg tagctgtaca ttttgtatgt gtctcttttt atagctgcag actgtacacc
     4381 tcatggtgtg ctttggaaag ttagtggctg atctgcctca tggcaaacct tcctaatagt
     4441 tttcccacaa aggacacatg gtcgagccgc ttgtagtgtc ggtggagtgg tagagagtga
     4501 ctagggtggg ctactggcag aagggaccat tctctttcag tctatgctga tggttcaata
     4561 tatgctgatg cgtcctacga tgtacgtgac tctgtccaaa gtgaagagat taaaaggcat
     4621 gtaccactga ggtgggtcat gaccattgtt gttttaagag aaggagagta tctgtaataa
     4681 acgtgaataa gggaaa
//
