LOCUS       NM_001108938            3714 bp    mRNA    linear   ROD 27-JUL-2024
DEFINITION  Rattus norvegicus EGF-like, fibronectin type III and laminin G
            domains (Egflam), mRNA.
ACCESSION   NM_001108938 XM_001054657 XM_345164
VERSION     NM_001108938.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3714)
  AUTHORS   Han,J. and Townes-Anderson,E.
  TITLE     Cell specific post-translational processing of pikachurin, a
            protein involved in retinal synaptogenesis
  JOURNAL   PLoS One 7 (12), e50552 (2012)
   PUBMED   23226524
REFERENCE   2  (bases 1 to 3714)
  AUTHORS   Manabe,R., Tsutsui,K., Yamada,T., Kimura,M., Nakano,I., Shimono,C.,
            Sanzen,N., Furutani,Y., Fukuda,T., Oguri,Y., Shimamoto,K.,
            Kiyozumi,D., Sato,Y., Sado,Y., Senoo,H., Yamashina,S., Fukuda,S.,
            Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and Sekiguchi,K.
  TITLE     Transcriptome-based systematic identification of extracellular
            matrix proteins
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 12849-12854 (2008)
   PUBMED   18757743
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC168173.1.
            
            On Aug 10, 2008 this sequence version replaced NM_001108938.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168173.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5756307,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3714
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q16"
     gene            1..3714
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /note="EGF-like, fibronectin type III and laminin G
                     domains"
                     /db_xref="GeneID:365691"
                     /db_xref="RGD:1306592"
     exon            1..299
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     CDS             203..3220
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /note="pikachurin; EGF-like, fibronectin type-III and
                     laminin G-like domain-containing protein"
                     /codon_start=1
                     /product="pikachurin precursor"
                     /protein_id="NP_001102408.2"
                     /db_xref="GeneID:365691"
                     /db_xref="RGD:1306592"
                     /translation="MDLISTFLLHFLLLACSLPPGAVSLRTALRKSGKVGPPLDIKLG
                     ALNCTAFSIQWKTPKRSGSSIVGYTVFYSELGSDKSLREQSHNVPVGQDTLITEEVIG
                     DLKPGTEYRVSIAAYSQTGKGRLSFPRHVTTLSQDSCLPPEAPHQPHVLVVSDSEVAL
                     SWRPGENEGSAPIQSYSVEFIRPDFDKSWTIIQERLQMDSMVIKGLDPDTNYQFAVRA
                     MNAYGFSLRSQPSNTIRTLGPGEAGSGRYGPGYITDTGVSEDDDASEDELDLDVSFEE
                     VKPLPATKVGNKKSKKTSVSNSEMDSRLAQPTSASLPETTVAVPPTPAQRKGKNSVAV
                     MSRLFDMSCDETLCSADSFCVNDYAWGGSRCHCNLGKGGEACSEDIFIQYPQFFGHSY
                     VTFEPLKNSYQAFQITLEFRAEAEDGLLLYCGESEHGRGDFMSLALIRRSLHFRFNCG
                     TGMAIIISETKIKLGAWHSVTLYRDGLNGLLQLNNGTPVTGQSQGQYSKITFRTPLYL
                     GGAPSAYWLVRATGTNRGFQGCVQSLAVNGKKIDMRPWPLGKALNGADVGECSSGICD
                     EASCINGGTCAAIKADSYICLCPLGFRGRHCEDAFTLTIPQFRESLRSYAATPWPLEP
                     QHYLSFTEFEITFRPDSGDGVLLYSYDTSSKDFLSIIMAAGHVEFRFDCGSGTGVLRS
                     EDTLTLGQWHDLRVSRTAKNGILQVDKQKVVEGMAEGGFTQIKCNTDIFIGGVPNYDD
                     VKKNSGILHPFSGSIQKIILNDRTIHVRHDFTSGVNVENAAHPCVGAPCAHGGSCRPR
                     KEGYECDCPLGFEGLNCQKAITEAIEIPQFIGRSYLTYDNPNILKRVSGSRSNAFMRF
                     KTTAKDGLLLWRGDSPMRPNSDFISLGLRDGALVFSYNLGSGVASIMVNGSFSDGRWH
                     RVKAVRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALRTNRQYMRGL
                     VGCISHFTLSTDYHISLVEDAVDGKNINTCGAK"
     exon            300..409
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            410..493
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            494..611
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            612..747
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            748..914
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1030
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1337
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..1438
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1539
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1540..1684
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1685..1874
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            1875..2000
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2001..2244
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2245..2356
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2357..2473
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2474..2654
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2655..2733
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2734..2877
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2878..2961
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            2962..3065
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
     exon            3066..3685
                     /gene="Egflam"
                     /gene_synonym="RGD1306592"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctgagagc ccgctccact ccaagcacgc cagcctccca gctgctgtct tgcctcctcg
       61 gactcccgag tggctcctgg ttcagttccc tgggtccccc accttctcat cctcgcgtca
      121 ctggcgtccc ccgcgtcccc aggagacgcc ctttccccgc gcgcccggga cttggtgaaa
      181 ctttgcagac acggtcggtg agatggattt aatctcaacc ttcttgctcc atttcttgct
      241 cctggcctgc agcctcccac ccggcgccgt gtcactccga accgctctgc gaaaatcagg
      301 caaggtggga cctcctcttg acatcaaact gggagccttg aactgtacag ccttcagcat
      361 ccagtggaaa acaccaaagc gttctggtag ctccattgtt gggtacacag tattttactc
      421 tgagcttggt tcagataagt ccctccggga acagtcacat aatgtacctg ttggccagga
      481 taccctaatc actgaggaag tgattggaga tttgaagcca ggcactgaat atcgagtgag
      541 catagcagcc tacagccaga ctggcaaagg gaggcttagc ttccctcggc atgtgaccac
      601 tttgtctcaa gattcctgcc tgccccctga agcaccccat cagccacatg tccttgtggt
      661 ttctgattct gaagtggccc tatcttggag accgggagag aatgaaggaa gtgccccaat
      721 tcagtcctac tctgtggaat tcattaggcc agattttgac aagagctgga ccataatcca
      781 agagcgcctg cagatggact ccatggttat caaaggcctt gatccagaca ccaactacca
      841 gtttgctgtg agagccatga atgcctatgg cttcagtctg cgcagccagc ccagcaacac
      901 catccgaact ctgggtcctg gggaggctgg aagtggccgc tatggacctg ggtatatcac
      961 cgataccggc gtgagtgagg atgacgatgc atcagaagac gagctagatc tggatgtctc
     1021 ctttgaggag gttaaaccac ttcctgctac caaagttggg aataagaagt ccaagaagac
     1081 ttctgtctcc aactcagaga tggactccag acttgcccaa cctacctcag catctctccc
     1141 tgaaactaca gtggctgtgc cacccacgcc agcccaacgg aaggggaaga acagtgtggc
     1201 cgtgatgtca aggctctttg acatgtcctg tgacgaaacc ctctgttcag ctgacagctt
     1261 ctgtgtcaat gactacgcct ggggaggctc acgatgccat tgcaacctgg gcaaaggagg
     1321 cgaggcctgc tcagaagata tctttattca gtatccacag ttctttggcc actcctatgt
     1381 aacctttgag cctctgaaga actcttatca ggcatttcag attactctgg aattcagggc
     1441 agaggcagaa gatggcttac tgctctactg tggggagagt gaacatggga gaggagactt
     1501 catgtccctg gctctcatcc gacgctccct ccacttcagg tttaattgtg gaactgggat
     1561 ggccatcatc ataagtgaga ccaaaatcaa gcttggggcc tggcactcgg tgacactgta
     1621 tagagatggg ctgaacgggc tgctgcagtt gaacaatggc accccagtaa caggccagtc
     1681 ccagggtcag tacagtaaaa ttaccttccg gacacctctg taccttggtg gtgctcccag
     1741 tgcttactgg ctggtcagag cgacggggac aaatcgtggc ttccaaggct gtgtgcagtc
     1801 acttgctgtt aacgggaaga agattgacat gaggccctgg ccactgggga aagccctcaa
     1861 cggagctgat gttggggagt gcagcagtgg gatctgtgat gaagcctcct gcatcaacgg
     1921 gggcacctgc gcagccatca aggccgactc ctacatctgc ctctgtcccc ttgggttcag
     1981 aggtcgacac tgtgaagatg catttaccct gaccattcct cagttcagag agtcgctgag
     2041 gtcctacgct gccacgccct ggcccctgga gcctcagcac tatctttctt tcaccgagtt
     2101 tgagatcaca tttcggccag actccgggga tggggtcctt ttgtacagct acgacacaag
     2161 cagcaaggac ttcctgtcca ttattatggc tgcaggccat gtggaattcc gcttcgactg
     2221 tggttctggg accggagttc tcaggagtga ggataccctc accctaggcc aatggcatga
     2281 cctacgcgtg tctcgcacag cgaagaatgg gatcttacag gtggacaagc agaaggtagt
     2341 agaaggaatg gcagagggag gcttcaccca gattaagtgt aatacagaca tttttattgg
     2401 cggagtccca aattacgatg atgtcaagaa gaactcgggt atcctccatc catttagtgg
     2461 gagcatccag aagatcatcc taaatgaccg gaccatccat gtgaggcacg actttacatc
     2521 tggtgtgaat gtggagaacg cagcgcaccc ctgtgtgggg gccccctgtg cccatggggg
     2581 cagctgtagg cccaggaagg agggttatga gtgtgactgt cccttgggct tcgaaggcct
     2641 gaactgccag aaagcgatta cagaagccat tgagatccca cagttcatcg gtcggagtta
     2701 cctgacctat gacaacccaa atatcctcaa gagggtgtcc ggatcaaggt caaatgcttt
     2761 catgaggttt aagacaaccg ccaaggacgg cctgttgctg tggagggggg acagccccat
     2821 gagacctaac agcgacttca tttccctggg tcttcgggat ggagccctgg tgttcagcta
     2881 caacctgggc agtggtgtgg cttccattat ggtgaatggt tccttcagcg atggccggtg
     2941 gcaccgagtc aaggctgtca gggatggcca gtctgggaaa attacggtgg atgactatgg
     3001 agccagaaca ggcaagtcac ctggcatgat gaggcaactt aacatcaatg gggctctgta
     3061 tgtgggtgga atgaaggaaa ttgctctgcg cacgaacaga cagtacatgc gaggccttgt
     3121 gggctgcatc tcccatttca cattgtccac cgattaccac atttcccttg tggaagacgc
     3181 tgtggatggg aagaacatca acacttgtgg ggctaagtaa caccagctgg ccttgcccaa
     3241 gggacattga cagcctctat cctgaaatcc caggggccca gagaccctgc ctgatgctgc
     3301 actcagaggt cttgaaatca ggtgtgttta ctttcatcga ggacaaagtg cgccctggtg
     3361 agagccaaga ctgaaggccc tgagtggcct tctctgctaa agccctgtgg accaaaccca
     3421 atggactact gtggatagga agcattggac tttgtcactc gacgtataga gtctgtgaga
     3481 gatggtatca gtgcacgctc tggaaaaact ctgctgtagc tcaatggctg tgctgtatta
     3541 gagagagcca gactgggtga gaaagagtga atgagtgaat gagagagaga gagagagaga
     3601 gagagagaga gagcacagag ataagcagag agagacagac acccctctga ataatattaa
     3661 aatatttttg ctcttccttg acttaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//
