LOCUS       XM_039113096            6400 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EFR3 homolog B (Efr3b), transcript
            variant X1, mRNA.
ACCESSION   XM_039113096
VERSION     XM_039113096.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6400
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6400
                     /gene="Efr3b"
                     /note="EFR3 homolog B; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 29 ESTs, 4 long SRA
                     reads, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 8 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:313928"
                     /db_xref="RGD:1310845"
     CDS             16..2508
                     /gene="Efr3b"
                     /codon_start=1
                     /product="protein EFR3 homolog B isoform X1"
                     /protein_id="XP_038969024.1"
                     /db_xref="GeneID:313928"
                     /db_xref="RGD:1310845"
                     /translation="MIHRVTEEPGLPGGSGVCGCCGALRPRYKRLVDNIFPEDPEDGL
                     VKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDVGRHRYGYVCIAMEALDQLLMACHC
                     QSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKFANIEEDTPSYHRSYDFFVSRFS
                     EMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQANIWDPQHMDKIVPSLLFNLQ
                     HVEEAESRSPSPLQAPEKEKENPAELAERCLRELLGRAAFGNIKNAIKPVLIHLDNHS
                     LWEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSHLDANSRSAATVRAGIVEVLSEAAV
                     IAATGSVGPTVLEMFNTLLRQLRLSIDYALTGSYDGAVSLGTKIIKEHEERMFQEAVI
                     KTIGSFASTLPTYQRSEVILFIMSKVPLPSLHHPVETGRTGENRNRLTQIMLLKSLLQ
                     VSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFVLEILISFIDRHGNRHKFSTIS
                     TLGDISVLKLKVDKCSRQDTVFMKKHSQQLYRHIYLSCKEETNIQKHYEALYGLLALI
                     SIELANEEVVVDLIRLVLAVQDVAQVNEENLPAYNRCALYALGAAYLNLISQLTTVPA
                     FCQHIHEVIETRKKEAPYMLPEDVFVEKPRLAQNLDGVVIEFLFRQSKISEVLGGSGY
                     NADRLCLPYIPQLTDEDRLSKRKSIGETISLQVEVESRNSPEKEERVPAEEITYETLK
                     KAIVDSVAVEEQERERRRQVVEKFQKAPFEEIAAHCGARASLLQSKLNQIFEITIRPP
                     PSPSGTISAAYGQPQNHSIPVYEMKFPDLCVY"
ORIGIN      
        1 ctggaattct gagggatgat ccaccgagtg acagaagaac ccgggctccc tggggggtca
       61 ggtgtgtgtg gctgctgtgg cgctcttcgt cccaggtaca agaggctggt ggacaatatc
      121 ttccctgaag atcctgagga tggtctggtg aaaaccaaca tggagaaact gaccttctat
      181 gccctctcgg ctccagaaaa gctggatcga attggtgcct acctctcaga gaggctcatc
      241 cgagatgtgg gtcgccatag atatgggtat gtctgtatcg ccatggaggc gctggaccag
      301 ctgctcatgg cctgccactg ccagagcatc aacctcttcg tggaaagctt ccttaaaatg
      361 gtggccaagc tgctggagtc ggagaagccg aacctgcaga tcctcggtac caactcgttt
      421 gtgaagttcg ccaacattga agaggacacc ccctcctatc atcgaagcta tgacttcttt
      481 gtgtcccgat tcagtgaaat gtgccactca agccacgatg acttggaaat caagactaaa
      541 atccggatgt caggcatcaa aggcctgcag ggggtagtga ggaagacagt gaatgatgag
      601 ctgcaggcca acatctggga cccacagcac atggacaaga tcgtcccgtc gctgcttttc
      661 aatctgcagc acgtggagga ggcagagagc cggtctccct cgcccctcca agcaccagag
      721 aaggaaaagg agaacccggc agagctggct gaaaggtgcc tgagagagct gctgggccgg
      781 gcagccttcg gcaatatcaa gaacgctatc aagcctgtcc ttatccacct ggataaccat
      841 tctctttggg agcccaaggt gtttgccacc cgttgcttta aaatcatcat gtactcaatt
      901 cagccgcagc actcccacct ggttatccag cagctcctga gccacctgga cgccaacagc
      961 cgcagcgcgg cgacagtgcg cgccggcatc gtggaagtcc tatcggaagc tgcagttatc
     1021 gctgccaccg gctctgtcgg gcccacggtt ctggagatgt tcaataccct gctgcggcag
     1081 ctgcgactca gcatcgacta cgcgctaacc gggagctacg acggcgctgt gagcctgggc
     1141 accaagatca tcaaggagca tgaggagcgc atgttccagg aggcggtcat caaaaccatc
     1201 ggctcctttg ccagcacact gccgacctac cagcgctcag aggtgatcct cttcatcatg
     1261 agcaaagtcc cgctgccttc cctgcatcac cccgtagaga ccggacggac aggggagaac
     1321 aggaaccggc tgacccagat catgttgctg aagtccctcc ttcaggtatc cacgggtttc
     1381 cagtgcaaca acatgatgtc agccctcccc agcaacttcc tggaccgcct tctctccact
     1441 gccctcatgg aggatgcaga aatccgcctc ttcgtcctag agatcctcat cagtttcatt
     1501 gatcgtcatg gcaaccgcca caaattctct accatcagca cccttggtga catctcagtc
     1561 ctgaagctga aagtggacaa gtgctcccgg caggacactg tcttcatgaa gaagcactcc
     1621 cagcagctat acagacacat ctacctgagc tgtaaggagg agacaaacat ccagaagcac
     1681 tatgaggccc tctacggctt gctggccctc atcagcattg agctggccaa tgaggaggtg
     1741 gtggtggacc tcatccgact ggtgctggct gttcaggatg tggcccaggt caacgaagag
     1801 aatttgcctg cctataaccg ctgtgctctc tacgctctgg gtgcagccta cctgaacctc
     1861 atcagccagc tcacaacagt gcctgccttc tgtcagcaca tccacgaggt aatagagacc
     1921 aggaagaaag aggcaccata catgcttcct gaggatgtgt ttgtggaaaa gccgaggctg
     1981 gctcagaatc tggacggtgt ggtgatcgag tttctcttcc gccagagcaa aatcagcgaa
     2041 gtcctcggag gcagcggcta caatgcggac aggctctgcc tgccctacat ccctcagctg
     2101 acagatgaag atcgcttgtc caagaggaag agcattggag aaaccatttc ccttcaggta
     2161 gaggtggaat ccaggaacag cccagagaaa gaggagcgag ttcctgcaga agagatcacc
     2221 tatgagacac tgaagaaggc cattgtggac agtgtggcag ttgaggaaca ggagcgtgag
     2281 cgacggcgac aggtggtaga gaaattccag aaggcaccct ttgaggagat tgcagcccac
     2341 tgtggggccc gggcctcctt actgcagagc aaactcaacc agatctttga aatcaccatc
     2401 cgcccccctc caagcccttc gggaaccatc agtgcagcgt acggccagcc gcagaaccac
     2461 tccatccccg tctatgagat gaagtttccc gacctatgcg tatactgaat tccaagagac
     2521 agaactcctt agaggacaca gtctgcagga ggaccgccct cctgctcact ctcaccgtgt
     2581 ggaaatctag ctgggatagc taagaactca acaccctgga aaatgagcaa aggtggagcc
     2641 tctggtcctc tgtggccctc ctgcctcctc ctcgtcttct gtgaggagga tccagccacc
     2701 tgccctctgg gctagcaagc atctcacctg ttttctcttg tatcagccag ggacagagaa
     2761 acacaagggt gtctcctgag aagcaggaga cctcctgctt ctgggaagcc tccattgggg
     2821 atgtgtcttt gagggagtgt cagccactcc caaagaaagg agcctgatat cagcatggtt
     2881 gatctgagga aagcgtagat ggcacttggg gaaactgagg caatcctccc atcccccact
     2941 ccccacatga agaagtgacg gtgtgaggga gagagctcgg aggggatgtc tgctctcacc
     3001 tcttaagtct ttagggggtc ttacccagca tcccatttcc tctctagtgt ctgtgtttcc
     3061 ttttctacta ttaatgagtg ctgagagctc acttcgggag ctggggccag agaccctgga
     3121 ggcagcatgg ctaccagaag agcaacaggc tggggatgtt gaggggctgg gtctcccaga
     3181 cagggtggca acatcagcaa agcacaagtg tggcaagtct gtcctggctg catagcatct
     3241 cctcacactc tctgtctgag gaagcctgtg gtggatcttc tctggttctc tatctactgg
     3301 atgtttcctg ggtggttaag tttggtccct gatgtctttg tttccacagc ctctgggatg
     3361 agtgaaagct gagcaaacta gctggttcta gacggctgaa gagagggagg aagcaccagg
     3421 gtcctgcggc ctgtccacgt cacttcccac ggaagatgct gtcagcggta gttaggggtt
     3481 gggagagagg cagttaagca agtggcactt tagaaagatt taacagctag gattgaaaca
     3541 atattttccc ctctctgggc aaagtctgag acactgggga caattagcct tgcttgtagc
     3601 tgaggtagag gtggtaggaa tcacttcgtc ttccattttc tctgtgggcc acgtacctgt
     3661 ccccatgtga ctcgtgtgtg ctgggcgcag ctgacccagg actgtgcggg tacaaaaatg
     3721 tctatttgct gtccccttgg tttgaccgtt tcctgatgcc cctcttggtg cccctctgcc
     3781 tcccagaatg cctagcagtg ggagtactcc atggtccagg atagtccttt ctttcccttc
     3841 aaacttcccc aaagtgttct gagctgcttt tctctcagga ccaacactgc tccagagatt
     3901 taacttctta gaaaaggcgg gggggggggg gggggggtgt gcttctgttg acctgcagga
     3961 gccatttcca gggtatggtt ttaggtagtg tggcctaggg tcataaagga gctatttctg
     4021 ctcaggagag ttaggcttct caggaccctg cagggtgaga gcctgcttgc taggacagag
     4081 ggaacatttt ccagaattag gagaactgga gtacgtgtac tttccgttgc ttgtgtggta
     4141 aatatcacag acggggcctg cctgagcctt tcccatggtc cctgcactga gctatgggtg
     4201 catggcctgc atggaccaca ccccaacacc acccacatgg ctttggggct gtgtggctgc
     4261 tgctcaaccc aactttataa gcaaggcctt gggtttttcc ctaatacctt ttcactaaga
     4321 aggcaactta gacacgaagg caagttatct tttagagact aaaggaatct aagccttgcg
     4381 cttaaaaact gtctttcttc tcttgctggc cacatctttt atcccatgct tggcttgaat
     4441 aggagtccgt tagtttcttt attgctcccc actgacatca tcgctgacca cccctgaggt
     4501 accttaatcc tagttgtgga ttgggagaca cttccttgga gtcttttgag agccagcatc
     4561 agaaccagat gccgcttgga tacgtctgtc tctctccctg gggacagaag aaaaagccag
     4621 agttcaattc tgcagactca atggctgctc agtcttctct gcctttcttt ttcctcatac
     4681 catggctgtg tggcagggac atgctgcttt tagagagcct gccgcttgtg tgccctcttc
     4741 ttggtagaat tgatttaaat ttacatccag taggatagtg gtttgcctgt taacaggaaa
     4801 tggaatctga tcttgcctca gaggcgggaa gtttagatgg tgattgcagg agagtctgtc
     4861 cttccatcac aaggctgggg agagaggcaa aagcacagtg ggtgggagct aggggaggag
     4921 cctagtgtcc attcttgcct tctgagcctc tggtgtctga tagcactgtc ttagccttgt
     4981 tctgttctcc ttccctgttg taaaccagga tcaaaaggag ccaacaaacc tattaaggcc
     5041 aaccagtccc cacccccacc atcaaagcac ccagggctcc agcttcatag gcatgagggt
     5101 gacaccctgc tgacagaatc cagtaggcag gaatgtgttt gtggtttaga agttaacaca
     5161 ttgatcataa agagtataaa aaatggatta acagaaaata cctgatccag tagcagctgc
     5221 tgtttacccc gtgccgagcc tgtttcttgt tttctcctta cctcgaagac taaaataaat
     5281 ggtttaaatg tcctcatcga aaaacctaga catgtcccct gtctggctcc cacctgcaca
     5341 caaagccaga caacatgggc ctgggaccaa ggaccctggt cagagcagcc atagcctgta
     5401 ggctgcctgt gcacaggctg ttcctggtcc acacgatgca gttccactgg attgggatct
     5461 gaaaaagccc taagactctt gacttcttga aaagaagccc cagacttctt gagggcccct
     5521 gggtcgcggt gcctgccagg tgtcctttgg ctgtcatagg cctgttaacc cattatagag
     5581 aaagcttcaa agccctgtgt ggcttagcta tgtttggggc ctgggggaaa gggaaggcct
     5641 gagctgtggg tcttaactta gtgttcaaaa gcagactcgg aggtcaggca ggggcatatt
     5701 agtcaggctg tacctgcttt ctttgacctt ctctggcaag cagactgcat caaagcgagg
     5761 gttctggcct ctgaatctgg agtaaaggtc agggaaaacg gtcaggcttc tatgacccta
     5821 taacccaagc tgggtctaat ctaaagactg cagaagagga atcatgggag gccctgttct
     5881 tgattctggc tactcggaga gtgataagga aaagtcgtgg gtagcaggaa agacatcatg
     5941 gccctgttga ccgccctttg gcaccagcct ggtttcttca gagagcatgg gaatctcgtg
     6001 agcctaacac ttgcccattt tgaactctta ctgattggag tctggcacat agagtatgga
     6061 agtgcacagc catagatgct gcagcccacc tatctcagcg tgtctgggat ttttttagac
     6121 cttcatgacc tggctgagtg tgtgtgtgag tgtgcgtgtg tgtctatgtc catgcatgtg
     6181 tgtaatgtag ttgtagttgc caacactgtg tatataatga ctgatgtatt tatatgtgag
     6241 tacagaattg gcacctgtgg cagttttctg tattttgaac ttgttggatc caattagttt
     6301 tccttccagg gtattggagg gactattcca aagtcattct ttagaactga cttttagtgg
     6361 atgatgccct tttcaaataa atgttaatgt tgtcaccata
//
