LOCUS       NM_001130564            5309 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus EFR3 homolog A (Efr3a), mRNA.
ACCESSION   NM_001130564 XM_001066760 XM_343253
VERSION     NM_001130564.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5309)
  AUTHORS   Nakatsu F, Baskin JM, Chung J, Tanner LB, Shui G, Lee SY,
            Pirruccello M, Hao M, Ingolia NT, Wenk MR and De Camilli P.
  TITLE     PtdIns4P synthesis by PI4KIIIalpha at the plasma membrane and its
            impact on plasma membrane identity
  JOURNAL   J Cell Biol 199 (6), 1003-1016 (2012)
   PUBMED   23229899
REFERENCE   2  (bases 1 to 5309)
  AUTHORS   Munemoto Y, Houtani T, Kase M, Sakuma S, Baba K, Yamashita T and
            Sugimoto T.
  TITLE     Mouse homolog of KIAA0143 protein: hearing deficit induces specific
            changes of expression in auditory brainstem neurons
  JOURNAL   Brain Res Mol Brain Res 128 (2), 131-140 (2004)
   PUBMED   15363888
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 28, 2008 this sequence version replaced
            XM_001066760.1, XM_343253.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132264 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5309
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..5309
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /note="EFR3 homolog A"
                     /db_xref="GeneID:362923"
                     /db_xref="RGD:1305976"
     exon            1..216
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     CDS             207..2666
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /codon_start=1
                     /product="protein EFR3 homolog A"
                     /protein_id="NP_001124036.1"
                     /db_xref="GeneID:362923"
                     /db_xref="RGD:1305976"
                     /translation="MPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKADMEKLTFYA
                     VSAPEKLDRIGAYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSIKPFVESFLH
                     MVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMCHSCHSDPEI
                     RTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQKIEEVDSRLGPP
                     SSPSAADKEENPAVLAESCFRELLGRATFGNMNNAVRPVFAHLDHHKLWDPNEFAVHC
                     FKIIMYSIQAQYSHHVIQEILGHLDARKKDSPRVRAGIIQVLLEAVAIAAKGSIGPTV
                     LEVFNTLLKHLRLSVELEASDSQKGSVGSVSLSSKDNDEKIVQNAVIQTIGFFGSNLP
                     DYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLLMVTSGYKAKTI
                     VTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGIRIIPDVADLKI
                     KREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLALITIELANEEVV
                     IDLIRLAIALQDSAIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVPAFCQHVSKVIE
                     TRTMEAPYFLPEHIFRDKCMLPKSLEKHDKNLYFLTNKIAESLGGSGYSVERLSVPYV
                     PQVTDEDRLSRRKSIVDTVSIQVDILSNSVPSDDVVSNTEEITFEALKKAIDTNGMEE
                     QEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPPPSPSGTLTVTS
                     GHAQYQSVPVYEMKFPDLCVY"
     exon            217..293
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            294..421
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            422..572
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            573..694
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            695..844
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            845..982
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1061
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1062..1197
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1198..1359
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1360..1474
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1475..1526
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1699
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1700..1775
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1776..1937
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            1938..2069
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2070..2137
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2138..2265
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2357
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2358..2406
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2407..2510
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2511..2560
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
     exon            2561..5309
                     /gene="Efr3a"
                     /gene_synonym="RGD1305976"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggtcggc ccaacgcgtc gtcgacgggg cgcggatcgc ggccggtggt agctgtaccc
       61 ggtcagcgtc cgctcgctcg gctattcgtc ctccgccccg acgaggcgtc cgtggccggg
      121 cttccgcagt catgctgtgg tcgacgcggc tcgcgctgcc cctctgagtc ccgggacggc
      181 ggcgagcgcg gcgagctcgg gtcgccatgc ctacccgagt gtgctgctgc tgctctgctt
      241 tgcgtcctcg atacaaacgt ctggtggaca acatattccc tgaagatccc aaagatggcc
      301 ttgttaaagc tgatatggag aaactgacat tttatgcagt gtctgcacca gagaagctcg
      361 atcggattgg tgcctacctg gcagagaggc tgagcaggga tgttgtcaga caccgctctg
      421 gatacgttct aatcgctatg gaggcgttgg accagcttct catggcctgc cattctcaaa
      481 gcatcaagcc atttgtagaa agcttccttc acatggtagc aaagctcctg gaatcagggg
      541 aaccaaagct tcaagttctt ggaacaaatt cttttgtcaa atttgcaaat attgaagaag
      601 atacaccgtc ctatcataga cgttatgact tctttgtatc tcgattcagt gccatgtgtc
      661 actcctgtca tagtgatcca gaaatacgaa ccgagattcg cattgctgga ataagaggta
      721 ttcaaggtgt ggttcgcaaa acagttaatg atgaacttcg ggctaccatt tgggaaccac
      781 agcatatgga taagattgtt ccatcccttt tgtttaacat gcagaagata gaagaagttg
      841 acagtcgcct aggcccacct tcttccccct ctgcagctga caaagaagag aaccctgcag
      901 tgctggcaga gagctgtttc agagaattgc tgggcagagc aacttttggg aatatgaata
      961 atgccgttag gccagttttt gcgcatttag atcatcacaa gctgtgggat cctaatgagt
     1021 ttgcagttca ctgctttaag attataatgt attctattca ggcccagtat tctcaccatg
     1081 tgatccagga aattcttgga caccttgatg ctcgtaagaa ggattctcca cgggttcgag
     1141 caggtatcat tcaggttctg ttagaggctg tcgccattgc tgctaaaggt tctataggtc
     1201 caactgtgtt agaagtcttc aacaccctgt tgaagcacct gcggctcagc gtggaactgg
     1261 aagccagtga ctcccagaag ggctctgtag gcagcgtctc cctaagctcc aaagacaacg
     1321 atgagaagat tgtgcagaac gctgtcatcc agacaatagg attttttgga agtaacttac
     1381 cagactatca gaggtcagag atcatgatgt tcatcatggg gaaagtgcct gtttttggaa
     1441 catccactca tactttggat atcagccaac taggggattt aggaaccagg aggattcaga
     1501 taatgttgct gaggtctttg ctcatggtga cgtctggata caaagccaag acaattgtta
     1561 ctgcactgcc tgggtcattt ctggatcctc tattgtcacc atccctcatg gaagactatg
     1621 agctgaggca gttagtcttg gaagtgatgc acaacctaat ggaccgccat gacaacagag
     1681 cgaagctccg tggcatcaga ataattccag atgtggctga cttgaagata aaaagagaga
     1741 aaatctgtag acaagataca agcttcatga aaaagaatgg gcaacagcta tataggcaca
     1801 tatatctggg ctgcaaagaa gaagacaacg ttcagaaaaa ctatgagctt ctttatacat
     1861 ctctcgctct gataactatc gaacttgcca atgaagaggt ggttatcgac ctcattcgat
     1921 tggccattgc tttacaggac agtgcaatta tcaatgaaga taatctgcca atgtttcatc
     1981 gttgtgggat tatggcactg gttgcagcct atctcaactt tgtgagtcaa atgatagctg
     2041 ttccagcatt ctgccagcat gttagcaagg ttattgaaac tcgaactatg gaagcccctt
     2101 attttctacc agagcatatt ttcagagata agtgcatgct tccgaaatct ttagagaagc
     2161 atgacaaaaa tttatatttt ctgaccaaca agattgcaga atccctgggt ggaagcgggt
     2221 acagtgtgga gaggctgtcg gttccttatg tgccacaggt gacagatgaa gatcgccttt
     2281 ctagaagaaa aagtattgtg gatactgtat ctattcaggt ggatatttta tccaacagtg
     2341 tgccttctga tgatgtggtt agcaacactg aagaaatcac ttttgaagca ctgaagaaag
     2401 caattgatac caatggaatg gaagaacagg aaaaggaaaa gagacgtctt gtgatagaga
     2461 agttccagaa agcaccattt gaagaaatag cagcacagtg tgaatccaaa gcaaatttgc
     2521 ttcatgatag acttgctcaa atattggagc tcaccatacg gcctcctccc agtccatctg
     2581 gaacattgac tgttacttct gggcatgccc aataccagtc cgtcccggtc tatgagatga
     2641 agtttccaga tctgtgtgta tattaactgg ctcatgaaga ctacagcatt taaaaaggat
     2701 cttaaaacct gaaaaacagg gccaagacga gtttcaggat ttgcataagg cttactggaa
     2761 tgtcctgaag tgttatggga cttgtctcta ccaacacttg tcatgctgta ttagaggttt
     2821 agggcccctg atttagtacc tctggagata agcttatacc acattaattt gtttcgaggt
     2881 tcctgttaga tttaagactg aacatgtatt gctttcacat tatgctcttg tttaatagta
     2941 tattttaaac tttgcacaaa catgatttta aaaaatgatt gaaaaatgta ttaagtgtct
     3001 gctccactgc ttaaaaatgg attgctttta ttttcttttc ttcaaaagta aatatattcc
     3061 taattttagg gttgcaaatt ctctcgtgct ttctcaatcc atgcttcaga tggactgtgt
     3121 aggcatcccg tcagtcctcc atagtaacat gcggcaggca ttcctaggga gcccgtgtag
     3181 actgtgtaga catcccatca gtcctccata gtaacatgcg gcaggcattc ctagggtgcc
     3241 cgtgtagact gtgtaggcat cccgtcagtc ctccatagta acatgtggca ggcatccctg
     3301 gggtgcccgt gatagaaaat atctcgtgga tagcattcca cccaggttcc catctggaac
     3361 tggtcttgtg atactatgtt ttctgcttca agttgagctc ttgagcccct taaagctcac
     3421 tcttggagtg ggaaaaaggt aaagtgtttt tcatatataa tgtgttagtt tacagactgc
     3481 gctttgaaac tatagttgta ttttcctgtg attccattaa atgaaatata tatttactat
     3541 agaaaagaaa gacatttaaa acagctacct gttcacctgt gcagagtcca taaatttcag
     3601 tttcttaatg aattaattta cattttatat tgacgtttta agtcttcatt gtacaaaaat
     3661 tctcccagtg aatcttttaa tttgtaagag ttgaaccaaa acttatatac atctctatga
     3721 agattagtta tatacttcaa aatagtctgt gtgttcttgc tacgttgtgt gagtgtaagc
     3781 tgcctgtcac ttgtgagact tgtaagacta caagggcagt atgtactgca catgctagcg
     3841 acaccaccgc atgctaaaca gaagaattct gcagttagaa aattctccta gcacagtttt
     3901 gtggaatcac tttgtataac tctacctttt caaattcagt ttctttttac ataaaacagt
     3961 attcctgtca aaaagtatag atcaaaaata attcagtttt agttttgttt ttgtttgaag
     4021 aaacgagata aaatataggg tgttttatca gtgtgttttt tggttatttg ggcatcatta
     4081 gtagaaaaag ggaaaaaaaa aagaaagaaa aagaaaaaag aaagagacca ggcatgccca
     4141 aagctctgaa tatttacagc caagtagacc atcttgaaga ggggtccatt tgctatcacc
     4201 tctgacagga cagcccaggc tgctgaccaa gtgcagatct accagacctt gttctcaaga
     4261 gggacaccgc agctgccact ggaaggccag tgctctgctc cagctctcac tgtacttccc
     4321 tcacaccggg aatatgttgc cagttatgaa aaacctaatg cacttttgtt tccctttttt
     4381 cttcttcatt ttaaaagaag gatattattt tttgattgca tttaaaatct agacaggggg
     4441 acatgcaaaa acaatcatca tccacttgga tgtcatttta taaattaaca ctgtgtgctt
     4501 ttgtatggaa aaatatataa tttaatagta taagaaaaga tatatattca ctggcattca
     4561 tgcagaacac aaactttgct gtacacattt tgtgtttctt agtggtttaa aatggcatgc
     4621 tttgcatgca aaggaaaacc attgcaatta gtcttttatt atacctgtat cttgggtttt
     4681 ataaactgct ggcttgagtt ttgttgctct taaaccacag tacatgtctg gatatcttag
     4741 gtccaacaga ctgaactagt tttgttgaca agggttccca agcaatggat gtttgtctgt
     4801 ctgattcttc cacatttaca ggaatcacat ttgggcgcgt gtgcaagcta tgctgtagct
     4861 agttcaggta ctgaatcttt aggacttgca gaagttcatt ttggcaggta catgatactc
     4921 aaagcattta tcattctcct tgctgtatac agttgattat attcttttgt gtgacaccaa
     4981 gctgttaatt taaacattcc tcctacgcta gtgtctagga attttacctg aactctcata
     5041 ctcattctct ctcatttcct ttttcctccc cctggtcctc tcagttccct ccaacctcct
     5101 gtagaactca ttatccttta gagtaatacc acccttaacc agcagtttaa ctccccactc
     5161 cctcaaaggg gattcatttg tctcactaat gcttatatgt atacacatat aacattactg
     5221 tattactgta acaaagtatg ttttttaagt gtaaattttc attgtgcaat catatgtaag
     5281 caataaaaca aatagaaaaa taacatcac
//
