LOCUS       XM_574979               2353 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ephrin A3 (Efna3), transcript variant
            X1, mRNA.
ACCESSION   XM_574979
VERSION     XM_574979.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427478.1.
            
            On Jan 21, 2021 this sequence version replaced XM_574979.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2353
                     /gene="Efna3"
                     /note="ephrin A3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 ESTs, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 130 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:170901"
                     /db_xref="RGD:620390"
     CDS             113..805
                     /gene="Efna3"
                     /codon_start=1
                     /product="ephrin-A3 isoform X1"
                     /protein_id="XP_574979.4"
                     /db_xref="GeneID:170901"
                     /db_xref="RGD:620390"
                     /translation="MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHL
                     RREGYTVQVNVNDYLDIYCPHYNSSGPGGGAEQYVLYMVNLSGYRTCNASQGSKRWEC
                     NRQHASHSPIKFSEKFQRYSAFSLGYEFHAGQEYYYISTPTHNLHWKCLRMKVFVCCA
                     STSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAV
                     GIAFFLMTLLAS"
ORIGIN      
        1 gtgggcgtga ctaaggttgg gggctggcag cggcggcagc agggagctgg gaagctgaga
       61 agccgggagc gcggggctca gtcggggggc ggcggcggcg gcggctccgg ggatggcggc
      121 ggctccgctg ctgctgctgc tgctgctcgt gcccgtgccg ctgctgccgc tgctggccca
      181 ggggcctggg ggcgcgctgg gaaaccggca tgcggtatac tggaacagct ccaaccagca
      241 cctgcggcgc gagggctaca cggtgcaagt gaacgtgaac gactatctgg atatttactg
      301 tcctcactac aacagctcag ggcctggcgg cggggcggag cagtacgtac tatacatggt
      361 gaacctgagc ggctaccgca cctgcaacgc cagccaaggc tccaagcgct gggaatgcaa
      421 ccggcagcac gcctcgcaca gccccatcaa gttctccgag aagttccagc gctacagcgc
      481 cttctcgctg ggctatgaat tccatgccgg ccaagaatac tactatatct ccacgcccac
      541 tcacaacctg cattggaagt gtctgaggat gaaggtgttc gtctgctgcg cctccacatc
      601 gcactccggg gagaagccgg tccccactct cccccagttc accatgggcc ccaatgtgaa
      661 gatcaacgtg ttggaagact ttgagggaga gaatccccag gtgcccaagc ttgagaagag
      721 catcagtgga accagcccca agcgggaaca cctgcctctg gccgtgggca tcgccttctt
      781 cctcatgacg ctcttggcct cctagttctg ccccttccta tgacagagag aggtggggca
      841 gggctgagaa ggagcaggga gccagctgtg gggcctacat ccttctgctc atggttggga
      901 gtggggtctg cactgtacac tatctgtgcc tgccctcttt gcccacactc tctaggacaa
      961 gcaccatggt ggatcaggca cagggacagc cacaggtccc aggtggcctg tggctttggt
     1021 aatgtgtggt accaaacctg ggggctataa aggcagtgct caggactccc tggcccctgg
     1081 taccttttcc tgaccctcag tgccctccct ctttgtccgc taagagacag atatgcccca
     1141 gagagaacaa atgaagcatg ggagatgccc cctgtcactc tcttctgggg cagaacgtgg
     1201 ggagggggac tagatgggtg aggggtggag cctcgggctg ccccttcccc tgtttacagc
     1261 aataagcatg tcctcctccc tccactccca catagaggac tgtggtttgg attgaatcca
     1321 agtttacaaa tagacacccc tggggggggg caggcagcgg acaggggtgg gcattggggt
     1381 gccagacagg catgtacaga ctctatatct ctatatataa tgtacagaca gacagagtcc
     1441 cttccccttc ttaaccttca cctttcttga cttccccttc catagtcaga ccccttcccc
     1501 accaggttag gccccccttg ggacccccct ggcccctctt ttgtcttctg tgaagacagg
     1561 acctatgcaa cgcacagaca cttttggaga ccgtaacaac aacgccccct cccttccagc
     1621 cctgagcctg gaaccaactc ccaggacctt gccctgccca ccctctggtc cccacccatc
     1681 ctgggccttt ttcaagtgct ttggctgtga ctttcatact ctgctcttag tctaaaaaaa
     1741 aaaaaaataa actggagata aaaataactg agtgtgtgtg gtttcaaggg gctatgtccc
     1801 tctgtttcac tggctgaacc ctgtagggct caggtcctgg gcgagcaggc attctaggtt
     1861 agagtccatg gagtgctggc tctggggtcc agttctgtgt ggagagaggg acagagcttc
     1921 aagttgagcc tgggtgattt ggggcaggtt cctttacctt tctaggctca ggcttcccgc
     1981 agggagagcg gtgtgagtac ccatttccca gagttaaggc tcagactggt gtgctctatg
     2041 ctgtagtcag aagcttttgg ctgggtccaa ggatttcagg ggatttgtga acctagatag
     2101 gaaaaaaaaa gttacatcgt tattttcact cacctgtgac aaatttaaca ttccctatgt
     2161 acttgggcaa ccggccacaa tagcattaac agtatgtgtg actttgtagc caacggaaat
     2221 cccagatgtt ttcaaacctg ctttatatct cagaatatca cttatgtgtc actactttga
     2281 aatgatcata gttgttagac tttacttgtt tttaacatgt taataaagaa acatatatat
     2341 tacataccaa aaa
//
