LOCUS       XM_039103763            2243 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ephrin A3 (Efna3), transcript variant
            X3, mRNA.
ACCESSION   XM_039103763
VERSION     XM_039103763.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2243
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2243
                     /gene="Efna3"
                     /note="ephrin A3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 8 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 27 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:170901"
                     /db_xref="RGD:620390"
     CDS             246..695
                     /gene="Efna3"
                     /codon_start=1
                     /product="ephrin-A3 isoform X3"
                     /protein_id="XP_038959691.1"
                     /db_xref="GeneID:170901"
                     /db_xref="RGD:620390"
                     /translation="MVNLSGYRTCNASQGSKRWECNRQHASHSPIKFSEKFQRYSAFS
                     LGYEFHAGQEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPTLPQFTMGPNVK
                     INVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTLLAS"
ORIGIN      
        1 tgctgctgct gctcgtgccc gtgccgctgc tgccgctgct ggcccagggg cctgggggcg
       61 cgctgggaaa ccggcatgcg gtatactgga acagctccaa ccagcagtga gtcggggacc
      121 cggagaaccc cctgcggcgc gagggctaca cggtgcaagt gaacgtgaac gactatctgg
      181 atatttactg tcctcactac aacagctcag ggcctggcgg cggggcggag cagtacgtac
      241 tatacatggt gaacctgagc ggctaccgca cctgcaacgc cagccaaggc tccaagcgct
      301 gggaatgcaa ccggcagcac gcctcgcaca gccccatcaa gttctccgag aagttccagc
      361 gctacagcgc cttctcgctg ggctatgaat tccatgccgg ccaagaatac tactatatct
      421 ccacgcccac tcacaacctg cattggaagt gtctgaggat gaaggtgttc gtctgctgcg
      481 cctccacatc gcactccggg gagaagccgg tccccactct cccccagttc accatgggcc
      541 ccaatgtgaa gatcaacgtg ttggaagact ttgagggaga gaatccccag gtgcccaagc
      601 ttgagaagag catcagtgga accagcccca agcgggaaca cctgcctctg gccgtgggca
      661 tcgccttctt cctcatgacg ctcttggcct cctagttctg ccccttccta tgacagagag
      721 aggtggggca gggctgagaa ggagcaggga gccagctgtg gggcctacat ccttctgctc
      781 atggttggga gtggggtctg cactgtacac tatctgtgcc tgccctcttt gcccacactc
      841 tctaggacaa gcaccatggt ggatcaggca cagggacagc cacaggtccc aggtggcctg
      901 tggctttggt aatgtgtggt accaaacctg ggggctataa aggcagtgct caggactccc
      961 tggcccctgg taccttttcc tgaccctcag tgccctccct ctttgtccgc taagagacag
     1021 atatgcccca gagagaacaa atgaagcatg ggagatgccc cctgtcactc tcttctgggg
     1081 cagaacgtgg ggagggggac tagatgggtg aggggtggag cctcgggctg ccccttcccc
     1141 tgtttacagc aataagcatg tcctcctccc tccactccca catagaggac tgtggtttgg
     1201 attgaatcca agtttacaaa tagacacccc tggggggggg caggcagcgg acaggggtgg
     1261 gcattggggt gccagacagg catgtacaga ctctatatct ctatatataa tgtacagaca
     1321 gacagagtcc cttccccttc ttaaccttca cctttcttga cttccccttc catagtcaga
     1381 ccccttcccc accaggttag gccccccttg ggacccccct ggcccctctt ttgtcttctg
     1441 tgaagacagg acctatgcaa cgcacagaca cttttggaga ccgtaacaac aacgccccct
     1501 cccttccagc cctgagcctg gaaccaactc ccaggacctt gccctgccca ccctctggtc
     1561 cccacccatc ctgggccttt ttcaagtgct ttggctgtga ctttcatact ctgctcttag
     1621 tctaaaaaaa aaaaaaataa actggagata aaaataactg agtgtgtgtg gtttcaaggg
     1681 gctatgtccc tctgtttcac tggctgaacc ctgtagggct caggtcctgg gcgagcaggc
     1741 attctaggtt agagtccatg gagtgctggc tctggggtcc agttctgtgt ggagagaggg
     1801 acagagcttc aagttgagcc tgggtgattt ggggcaggtt cctttacctt tctaggctca
     1861 ggcttcccgc agggagagcg gtgtgagtac ccatttccca gagttaaggc tcagactggt
     1921 gtgctctatg ctgtagtcag aagcttttgg ctgggtccaa ggatttcagg ggatttgtga
     1981 acctagatag gaaaaaaaaa gttacatcgt tattttcact cacctgtgac aaatttaaca
     2041 ttccctatgt acttgggcaa ccggccacaa tagcattaac agtatgtgtg actttgtagc
     2101 caacggaaat cccagatgtt ttcaaacctg ctttatatct cagaatatca cttatgtgtc
     2161 actactttga aatgatcata gttgttagac tttacttgtt tttaacatgt taataaagaa
     2221 acatatatat tacataccaa aaa
//
