LOCUS       XM_039084121            2273 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EF-hand domain family, member D1
            (Efhd1), transcript variant X5, mRNA.
ACCESSION   XM_039084121
VERSION     XM_039084121.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2273
                     /gene="Efhd1"
                     /gene_synonym="RGD1559565"
                     /note="EF-hand domain family, member D1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:501181"
                     /db_xref="RGD:1559565"
     CDS             114..755
                     /gene="Efhd1"
                     /gene_synonym="RGD1559565"
                     /codon_start=1
                     /product="EF-hand domain-containing protein D1 isoform X5"
                     /protein_id="XP_038940049.1"
                     /db_xref="GeneID:501181"
                     /db_xref="RGD:1559565"
                     /translation="MSSEELACKLQRRLRLETRAETHQDSPQAAPCTAPAGHREPEPP
                     APAPTVSADSELNLKLSSRLNIHQGAVRSRRSKVFNPYTEFPEFSRRLLKDLERMFKT
                     YDAGKDGFIDLMELKLMMEKLGAPQTHLGLKNMIQEVDEDFDGKLSFRFCSFSTRLLL
                     ESCRRTVGCWHWPSFLRSMSPWRVSEVPRTSSKPSETPRQSGRVIVVITAPSV"
ORIGIN      
        1 ccccgagcga ctccaccgag cgtcacaaag ccacgagccc gcaaggagcg cacaatcctc
       61 tgcgtcctcg taccggatcg cgaaccccag ttccatcacc accaccggcc accatgtcca
      121 gcgaggagct ggcctgcaag ctgcagcgcc ggttgagact tgagacgcgg gcagaaaccc
      181 accaggacag cccccaggct gcaccgtgca ctgccccagc cgggcaccgg gagcctgaac
      241 cgcctgcccc ggcgcccacg gtcagcgcgg actccgagct gaacctcaag ctgagcagca
      301 ggctgaacat ccaccagggc gcagtgcggt cccgccgctc caaggtcttc aacccctaca
      361 cagagttccc ggagttcagt cgccgcctcc tgaaggatct ggagaggatg ttcaaaacgt
      421 atgatgctgg aaaagatggc ttcatcgacc tgatggagct gaaactcatg atggagaaac
      481 tgggggcccc tcagacccac ctgggcctga agaatatgat ccaggaggtg gatgaagact
      541 tcgacggcaa gctcagcttt cgtttctgct cattttccac aaggctgctg ctggagagct
      601 gcaggaggac agtgggctgc tggcactggc caagttttct gagatcaatg tcgccctgga
      661 gggtgtcaga ggtgccaaga acttcttcga agccaagcga gactccaagg cagagtgggc
      721 gtgttatcgt tgtaattaca gcgcccagtg tgtaatggct ctcaataaac gttctgcatg
      781 aatgaagaat ggagtgaaac actgtttgga cttgggagag gccataaagg agatgacact
      841 ggtgacagat gttccaagat gaatggggat gcaccttgta atcaaggaag ggaggcgttc
      901 tagtcatggg aactgcaagc gaaggctcca agacatgcca ggccaggagt cttggaggct
      961 ggggacgact cgggtaagca ggcagggctg gagccatagc tggtaaagca agccaagacg
     1021 caagtgtgca gacctaggaa cagggccacg cttctccccc tccgtcatga ggtaggtgag
     1081 tcttgagatc agatggtccc tggatgtaac ccccaggctg agaggacatc tgtagactgg
     1141 ccttccaggt ccaacccaag tctctctcaa acttttttgg gtgtgtgtgt gaggaggcgg
     1201 agttgtcagg aaacacgtgg ctggcccagt gcagccgggc tgggatagca cagctgcggg
     1261 ggctggagag ccctcagagg tgtttgtcca ggtctgacct aggacagatg cactaggaga
     1321 tattcccaca ggtgcatggg gaggaatatc ggttgtcaag cattgtgaca gtgggaccag
     1381 ggacagtata atgacacaca actctagaac tccagcgctc gtgactacct tattgggaaa
     1441 ctttggaaga ccagtaggca gtgtgcattg aggaggagag ctgagatttt cttttccatc
     1501 aagaaagccc ctcccccaag tgggagtggt ttgaggagag aaagtggtag actgggcttt
     1561 ggtgtgaagt ccaaggtaac ttcaggtaca gtagagacat gcatggattt ggtaggtatg
     1621 gtgctgactg caagtgatcc tccagtcatg gccacatgga ggctataaaa ataggtctgt
     1681 cttggacgtc tgtgtgtctt gctttaagga tgggtcgtga agcaattctt ccatgccttt
     1741 accaatgtct ggatcatagc tgtcctcata gcccctgggg gtaggggtgg acccagattc
     1801 cacatgccag gtgaacttct cataggaaga aaggaggaag aaatatgatt tgtgggcacc
     1861 caggagcaca gaggatggga gccatcatcc caggtacatg tcgagccagc aggagaatag
     1921 atcttagtgg taactggact atggggaaga cttgtatgta agtcctcagg gaagttgggt
     1981 catcagaagt ccaagagaat gctggagaaa agtgctattt tgctggacaa gagctgtttg
     2041 gatttttgaa atttcatttt tatttttgtt agttatgtat atgaatatgt ctgggttagg
     2101 gggtctgtga ctatgactgc gggagcccaa agaagtaaga gttatcagat gtctctggat
     2161 ttagagtagc tttgagcctc ttggtgtggg tgctgggaat tgaacttcga tccatctgga
     2221 agaacagtgt gtgctctgac ctctaagtca tctctccatc cctagcaagt ccc
//
