LOCUS       XM_039084118            6250 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EF-hand domain family, member D1
            (Efhd1), transcript variant X1, mRNA.
ACCESSION   XM_039084118
VERSION     XM_039084118.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084118.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6250
                     /gene="Efhd1"
                     /gene_synonym="RGD1559565"
                     /note="EF-hand domain family, member D1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 5 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:501181"
                     /db_xref="RGD:1559565"
     CDS             112..831
                     /gene="Efhd1"
                     /gene_synonym="RGD1559565"
                     /codon_start=1
                     /product="EF-hand domain-containing protein D1 isoform X1"
                     /protein_id="XP_038940046.1"
                     /db_xref="GeneID:501181"
                     /db_xref="RGD:1559565"
                     /translation="MSSEELACKLQRRLRLETRAETHQDSPQAAPCTAPAGHREPEPP
                     APAPTVSADSELNLKLSSRLNIHQGAVRSRRSKVFNPYTEFPEFSRRLLKDLERMFKT
                     YDAGKDGFIDLMELKLMMEKLGAPQTHLGLKNMIQEVDEDFDGKLSFREFLLIFHKAA
                     AGELQEDSGLLALAKFSEINVALEGVRGAKNFFEAKGPTDGTQVVKFGTKLSGQPSVE
                     TLKGSDSPCWTDCTAIGQKWT"
ORIGIN      
        1 ccgagcgact ccaccgagcg tcacaaagcc acgagcccgc aaggagcgca caatcctctg
       61 cgtcctcgta ccggatcgcg aaccccagtt ccatcaccac caccggccac catgtccagc
      121 gaggagctgg cctgcaagct gcagcgccgg ttgagacttg agacgcgggc agaaacccac
      181 caggacagcc cccaggctgc accgtgcact gccccagccg ggcaccggga gcctgaaccg
      241 cctgccccgg cgcccacggt cagcgcggac tccgagctga acctcaagct gagcagcagg
      301 ctgaacatcc accagggcgc agtgcggtcc cgccgctcca aggtcttcaa cccctacaca
      361 gagttcccgg agttcagtcg ccgcctcctg aaggatctgg agaggatgtt caaaacgtat
      421 gatgctggaa aagatggctt catcgacctg atggagctga aactcatgat ggagaaactg
      481 ggggcccctc agacccacct gggcctgaag aatatgatcc aggaggtgga tgaagacttc
      541 gacggcaagc tcagctttcg ggagtttctg ctcattttcc acaaggctgc tgctggagag
      601 ctgcaggagg acagtgggct gctggcactg gccaagtttt ctgagatcaa tgtcgccctg
      661 gagggtgtca gaggtgccaa gaacttcttc gaagccaagg gtcctacaga tggaactcag
      721 gttgtcaaat ttggcaccaa gctatctggc cagccctcag tagaaacgct taaaggatcc
      781 gattcaccct gttggactga ttgcactgcg ataggacaaa aatggacctg ataggaggag
      841 ccctgagagc caagtctcaa ttgcagatgc ccaggcaggt gagaccatag cttagggtca
      901 ggtaaaaaca ttcttgtgtg tgtcttgtag cctctgagag aggtcagcat ctgttcatat
      961 cagggggaaa ttgtccagga aatgcagaaa taaaaagcaa gatgactgag aagataggac
     1021 atggggttag ggtcaagggc tggttctaga acccagaggg aggatggtca ggggtggtct
     1081 attagaaccc agaggcaagc tggacttttg tggtgccgga gatgaaaggt tcctggttga
     1141 agagatggca aatgtctccc tctcctgttg tcctaactag gaatggtggg gaggggagac
     1201 ttggtgctgg atcagacctc ttccagtgct ttagcttcac acaccaacac cctggaggga
     1261 ggcgtttatt gtcccgtttt ggttggggcg tatgtgtgtg agtgcgcctg tgcatgtgcg
     1321 tatttgactc gagatgaaat ctcccatagt gtgggctgac cttgaacttt taatcttcct
     1381 gccaccactg ccccagtgct gggaaaaaca aggcatttgc caacagactc aacaattttc
     1441 ccacacagaa gataaggatg ttgaagcttg cacagtgttt ccttggtaaa catttagcaa
     1501 caaactatca tcttgtaatc ctagcattca ggaggcagag ataggaagtt taagagttca
     1561 aggcccagat ccacaacata cagagttcag cagctgtctg gactagaaga ggccctgtgg
     1621 tataaacatc aaggtttttt tttttttagg ttttatttta tttatatgag tataccgtca
     1681 ctgtcttcag atctgtacac cagaagagaa catcagatcc cattacagat gattgtaagc
     1741 taccatgtgg ttgttgggaa ttgaactcag gacctctgga agagcagtca gccgtctcac
     1801 cagctcctca agtttgtttt aagttctata aataacatac tttacatcct tcgtcatgcc
     1861 atagtccaca tagctattga ctaacagaga tcgatccaca gagaaggtgc ccccaccacc
     1921 ccacccccgc cctagactcg catctgttgc cagattgtgg ttgcaatgga cagaagaaaa
     1981 tagtttctag gactagagag attgctcagt ggttaagagc actggttgtt cttccagagg
     2041 acctgagttt gattgccagc acccacatgg ctgtttacaa ctgtctgtaa ctccaggtcc
     2101 agggcttcca aagtccaaac atgcacatgg agcacagact cacgtaaagg caaaaatacc
     2161 taaacacatt aaaatagaat ttaaaaaaat tagttccagt atgatattag ttcctagttt
     2221 gagataattc ataaagaaaa aagtgaaaga atgaatcctg aaacctcagg ctgggtgtga
     2281 cagtgcatgc ctgtaatccc aacccttaag gaagctgagg caggaggttt acagcatgtt
     2341 tgaggctggc ttgggcttcc cagcaagtaa caggactcaa gggagctgag tattacagct
     2401 gtgaggagaa agatccctca cagggaggct tggtcaggga gccaaggagt accacaaagt
     2461 cacaccatac aagaaacctc ccacaagaga tttgctagga gacaaagagg gtgtctcagg
     2521 cgagaagcca cagggaaatg agcaagacac aggcttaata tagggtttct tgggggagga
     2581 gtttttcagg gtggaaattt ctagggtggg gattggtaag atttcaagtc ctgaacctgg
     2641 gcaagcccag ggattggtgg gtttttgagc tcagggatta gtgggttgga gcttggggat
     2701 tgatggtttt tttgagctca gggattagta aattttcaaa ctgggaaaga gggtagctta
     2761 agagataacc cagtggttga agtgtttgct gcaggaaggc cagagtttag atggccagaa
     2821 ccctttgtga aacaggacat gttaatctca gttctcttgt ggcaagaagg gtggattgaa
     2881 gcagttcctg gaaactagga gaccagctag cctggataca gaaacacgag taagagagca
     2941 attttgtccc aaacaaggtg agggtgaaga ctaacacttg aggttgtctt ctgacatcta
     3001 cacacaagca agcaggcacc atcaacaaag agagagaccg ggaggaaaaa cttcagcttc
     3061 attgtttggc atactgagta atttcttgtt gaggatttta agttccagga ggtcatcctc
     3121 tcactgtctc gggacatttc atgacgcaaa ggccacagac aatttaaagt ttcacctgca
     3181 tttttaacat tttcccagcc cattatgaca agatggtgta cacacagaca gtgaaggcca
     3241 actgttggct gttttccatg atgtaaacat tcacacagag attgagttca agctctcagt
     3301 ggaacgtgga tgcaggtaga gccaggaagc tgttcacagt caaataaaaa acaccaccca
     3361 gcattcccac tctggagaca cagcccgagc agatcctagt agtatgtaat atgatggccc
     3421 ttcagtactc aacccttttc ccgttggtac gattgattgt agattcgttc aatctaagat
     3481 tttgtaatga ctaattttat aaatggctca cagacattct aggaatcaag ttggttttcg
     3541 agcagtcaca agtcagttgc ttgtaggtct gacatacctt gaggtagtgg agagactgga
     3601 tctgttttct tctaattgaa ggaggccgag gtggaatgga tgggtgacca ctgtgaggag
     3661 agagataaga aagaaatcca atgaagatcc agctctggcc aggaatcccc aagtcccagt
     3721 ggttgtagcc actctcttta taagaggttt ttattgtttt tatgtataag aatcctttac
     3781 ctgcctacat gtatgtgcac cacatgccta cagaggccag aagaaggtgt ccagagtcct
     3841 tggaactgga ggttcagatg gttttggact gtcatataga ctctgggaac tgaactttgg
     3901 tcctctgtaa ctgctcttga tcactaagct tcctctctat actgaagaga ttctttttta
     3961 agtgtgtcct cagcttggaa gcatgcattc taaattgtgg cagtgaaggt ggagcttggt
     4021 gaggcgggtg agcagatgtg atggtatgcc aggctgggga atgagggtgt agttggccct
     4081 ttgtgtatat gaagggattg gttctagacc tcacaatata aagtggtgtt tagggttgta
     4141 gacatagtgt acttgacaaa gcatttatct tgcaagcatg ggaacccaag ttcagacccc
     4201 tgaccccact tgaaaaaaaa aagaagccag acatggtggt atatctggat ccttggggct
     4261 ccctagctag ccagccagcc agccagccag ccagccagcc tacttactta gcaagctcca
     4321 ggctaaagca aggtgagcac atgagaaact acagtcaagg gtcttctggt ctctgcatgc
     4381 aggtgtaccc atgtgcatgc tcacatatac acacatgaag tggcttatgt ttgcataaac
     4441 ctatgtacat tcctccccca tatattgata atcagtgttg tgaaaacata gacaataata
     4501 aataaaggtt acaaataaca gacaatacaa acaagtaaca aaagacggtg agcagatgca
     4561 cgaagggtca tgcatgttca ctttctgaag acactgaatt tgagaacaaa ctcatatgac
     4621 aatcacagct accagttgct ctagctccat gggcacccag acacatgcac actcatcatt
     4681 ttaaaataaa taattagaaa ttaaaaagaa gtttaattaa ttaattaaaa catttttgaa
     4741 atagagtttt atatacgcag cccaggttgg ccttaagtct gtaatcttcc tgcctttgtg
     4801 tccagacaaa attgaattaa aaagaaattt atttaattga aaagaaattt atacccattt
     4861 tctgattccc aggtttgaat tcatggcctt gtgcatgcta agcacacaag tagccactgg
     4921 attctacctc atctccccca aataatgctt aaacagagca tcgagtgata ttaaaccctg
     4981 ggtggggtgt gaggacaagt gcagccacca tggaaacagc atgttagttt tttggggatc
     5041 gaacccaggg ccttgccttt gctaggcaag cgctctacca ctgagctaaa tccccaatcc
     5101 cgaaacagca tgttagataa gaggaatgga tgtcttctct gaaggagtcg agtgatggga
     5161 aatataggaa caatagggaa ctgtcaacag aaggttctga gaacagctgg tcccagtgga
     5221 acaggctttt aagcttagcc acttgggaag ctgaggcagc agggtcacaa gttgccagcc
     5281 caaccctgtc tcaaaaagtt gagaggtctg aggatactag atgaggggag atggtctttt
     5341 ctaaaaggct cagttccaaa atagactgcc aagataggag atagattaga cagacagaca
     5401 gacagacaga cagacagaca aagtaactag ataaatagat tggaaagaaa taaaacacac
     5461 acacaaaggt aaatgtaaag gacagttggc tagctatttt aagtagaaga atttaaaatc
     5521 tctcctttat accctctatt aaaatagatg agggactgga gagagggctt ggtggttaag
     5581 agcactggct gcttttgaag aggatctggg ttcacgtccc agcacctcat ggtggctcac
     5641 aaacatctgt gactccagtt ccaggggtac agtgacatct cctgacctcc atagaagcca
     5701 cacatgtggt gcatataaca tacatgcagg caaagcactc atacacataa aatgagattc
     5761 aaaatctaaa ataaaggagc gtgtgtctgt gtgtctgtct gtgtgtatgc atatgcgcac
     5821 caaccagata aagtcaggta tatctcacac ctgtcaaacc aatgtttatg aggtggaggc
     5881 aggagggtca aaaattgaag gccagtttgg gctacacagt gagtttgagg ctagcctgga
     5941 ctatgtgagc aaagtacaga agatacacat gaaagtatta gaagggaata tagaaaagtg
     6001 gatttagagc gttggaggct ttcttcggtg tgatataaaa ggcaagagct aatgttgata
     6061 aattaaatta catgaagatt ttaagtactt tggaggccca aagataggaa gagaagattt
     6121 gcagcaaggg attggtgtta tgtagagagc tgcagattga aagagaaaag cagttgggac
     6181 gtgaacatgg gcaaagggtc caggtgggta actcaccgag gaggaactga gacgacgaca
     6241 atatgttttt
//
