LOCUS       NM_001106952            2563 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus EF-hand domain containing 2 (Efhc2), mRNA.
ACCESSION   NM_001106952 XM_001058635 XM_217589
VERSION     NM_001106952.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S
            and Russo T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474009.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_217589.4, XM_001058635.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq11"
     gene            1..2563
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /note="EF-hand domain containing 2"
                     /db_xref="GeneID:302507"
                     /db_xref="RGD:1563388"
     exon            1..133
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     CDS             92..2344
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /note="EF-hand domain (C-terminal) containing 2"
                     /codon_start=1
                     /product="EF-hand domain-containing family member C2"
                     /protein_id="NP_001100422.1"
                     /db_xref="GeneID:302507"
                     /db_xref="RGD:1563388"
                     /translation="MALPLLPGNSFNRNIGKEKFHRSQHWGFCNNVRMLVSEDKPGIG
                     GDLLPGQKIKPKHSVFPKGDGTDAPSWVAFDKQVLSFDAYLEDEVPDKRQENFRIRYY
                     KIYFYLEDDTIQVNEPEVINSGLPQGTSIRRHRIPFPPPYDDQFYTVYDFNINISVVF
                     YGRTFKIYDCDPFTKNFLRKIGIKLNPPGQRPFDPYMKMRRETLEFVDPFRPYQSFDT
                     LKRFLQYDGKVLRFFCLWDDSASLFGDRREFVLHYFLCDDTIEIREILPSNSGRDAMS
                     SFLRRSKLPKFGPPGIYQPGQITDRAVLNVYGGLSEWRADGYLLDKYQLGKIEQDFYT
                     DQDLSIGATINVWGRKVLLCDCDEFTKTYYKTKYGVDNFTPISCKPPPLPKIKRKYPP
                     YTGFGSEEDSFRSCVSLKPTPHRKNFRKFMELDSFGNVSNILRYFAKLITHKCADVDR
                     MFVIAFYLSDDTISVFEPIERNSGNAGGMFLKRSRVKKPGQEVFKSEFSEYVKAEELY
                     IGATVNINGYLFLLLNADEYTLNYMESNTDRFPYSNFELAIQKLKHEKSKSREITQVF
                     AAADYNHTKVVPYNAFRDILMSITMGNLIDQELITIARHYRVPEVMDPDLAYLIAQAH
                     EKFKKNMFENFDMFIYNCVYEDRERKGVLPTTDIKRMCKSSRLPLSDDFLDCLLSRFE
                     DKDQQINYEIFFSLLNWRMNPTPDLQAPPYLKEKCEDVWVGMPSPIPVRYVRYLDFLM
                     DVYGLEENMP"
     exon            134..322
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            323..473
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            474..697
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            698..949
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            950..1063
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1202
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1203..1368
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1369..1511
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1512..1708
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1709..1839
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            1840..2037
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            2038..2130
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            2131..2236
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
     exon            2237..2563
                     /gene="Efhc2"
                     /gene_synonym="RGD1563388"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 taacgcgggg ggtcaaacaa gcggcggttg agggcattaa ctatcttctc tctctggtcg
       61 gacccttgat cctcttcgga ctgtgacagc catggctcta ccgcttctgc ctggcaacag
      121 ctttaaccgc aatataggaa aggagaagtt ccataggtct caacattggg gcttttgcaa
      181 caatgtcagg atgctcgtga gtgaggataa gcctggaata ggtggagatc tactacctgg
      241 gcaaaagata aagcctaaac acagcgtatt tcccaaagga gatggaaccg atgcgccatc
      301 ctgggttgct tttgataagc aggtattatc ttttgatgcc tatttggaag atgaagtacc
      361 tgataaaagg caagaaaact ttagaataag atactataaa atctatttct accttgaaga
      421 tgacaccatt caagtaaatg aaccagaagt gataaatagt ggactgcctc aaggtacttc
      481 tatcaggcgt catcggattc cttttccacc tccttatgat gatcagtttt atactgtgta
      541 cgacttcaat atcaacataa gtgttgtctt ctatggacgc acgttcaaga tttatgattg
      601 tgatccattc acaaaaaact ttctgaggaa aataggaatc aaattgaatc ctccaggaca
      661 gcgtccattt gatccctaca tgaaaatgcg gagagagacg ttagagtttg tggatccttt
      721 tcgtccctat cagtcttttg acaccctgaa acgattcctc cagtatgatg ggaaggtttt
      781 gcgtttcttc tgcctgtggg atgattcagc ctcactgttt ggggatcgta gagaatttgt
      841 ccttcattac ttcctttgtg atgatactat tgaaatcaga gaaatactgc catctaattc
      901 gggccgggat gctatgtcat cattccttcg gaggagtaag cttcccaagt ttggcccacc
      961 tggaatctac caaccgggcc agataacaga tcgagcagtt ctcaatgtgt atgggggctt
     1021 gtcagaatgg cgagcagatg gctacctgtt ggataaatac cagctaggaa aaatagagca
     1081 agacttttac acagaccagg acctgtctat aggtgccacg attaatgtct ggggaagaaa
     1141 agtcctcctc tgtgactgcg atgagtttac caagacctat tataagacaa agtatggagt
     1201 tgataacttt acgcctattt catgcaagcc tcctcctctt ccaaaaataa aaaggaaata
     1261 cccaccttac actggctttg ggtctgaaga ggattctttc cgctcctgtg tgagcctcaa
     1321 gcccacacct catcggaaga acttcagaaa attcatggaa ctagacagct ttggaaacgt
     1381 aagcaatata ctccgttatt ttgcaaaact aattacacac aaatgtgctg atgtggacag
     1441 gatgtttgtc attgcatttt atctcagcga tgacacaatt tcagtgtttg aacctataga
     1501 gaggaattca gggaatgctg gtgggatgtt cttgaaaaga agtcgtgtga aaaagcctgg
     1561 acaagaagtc tttaaaagtg aattttcaga atacgtcaag gctgaagagc tttatattgg
     1621 agccacagtg aatattaatg gctacctctt tcttctgctt aatgctgatg agtacacctt
     1681 aaactatatg gagagtaaca cagacaggtt tccatatagc aacttcgaac ttgccataca
     1741 aaagctgaaa catgaaaaat caaaatcaag agagatcaca caagtgtttg cagctgctga
     1801 ctataatcac acgaaggtgg tgccttataa tgcattcaga gatatcctga tgagcatcac
     1861 tatggggaat ctcatagacc aggagctcat aaccattgca cgccactacc gtgtgcctga
     1921 agttatggat ccagacttag catacttaat tgcacaggcc catgaaaagt tcaagaaaaa
     1981 tatgtttgag aattttgaca tgttcattta taactgtgta tatgaagaca gagaaagaaa
     2041 aggtgtatta cccactacag acatcaaaag gatgtgcaag tcttccaggc tacctttgag
     2101 tgatgacttc ctagattgct tactgtccag gtttgaagac aaagaccaac aaataaatta
     2161 tgagatattt ttctccctcc tgaactggag aatgaatccg acacctgatc tgcaagcccc
     2221 gccatacctt aaagagaaat gtgaagacgt ttgggtggga atgccatcac ctattcctgt
     2281 gagatacgtt aggtacttag actttttgat ggatgtctat ggcttagagg agaacatgcc
     2341 atgaaggttt tcatcaactc tctttgatct cctgttctca ttatgccatt ttattttaat
     2401 agatataatt tcattaaaaa caaacaaaaa taagaagcaa ggtttctatt aaatggaaat
     2461 ccattaacca caattaattt tctttgtcac tgtagctcct cagaacagct tgttatattg
     2521 ctgatgtacc agcactatta aaaataccat ttaaaacact gtt
//
