LOCUS       NM_001163921            1689 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus EF-hand and coiled-coil domain containing 1
            (Efcc1), mRNA.
ACCESSION   NM_001163921 XM_001062782 XM_001062901 XM_001075064 XM_001075115
VERSION     NM_001163921.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1689)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Aug 8, 2009 this sequence version replaced
            XM_001062782.1, XM_001062901.1, XM_001075064.1, XM_001075115.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-672               JAXUCZ010000004.1  121745815-121746486
            673-935             JAXUCZ010000004.1  121747534-121747796
            936-1066            JAXUCZ010000004.1  121764609-121764739
            1067-1205           JAXUCZ010000004.1  121766042-121766180
            1206-1336           JAXUCZ010000004.1  121767168-121767298
            1337-1488           JAXUCZ010000004.1  121769731-121769882
            1489-1552           JAXUCZ010000004.1  121772087-121772150
            1553-1689           JAXUCZ010000004.1  121773042-121773178
FEATURES             Location/Qualifiers
     source          1..1689
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..1689
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /note="EF-hand and coiled-coil domain containing 1"
                     /db_xref="GeneID:685202"
                     /db_xref="RGD:1596494"
     exon            1..672
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1689
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /note="coiled-coil domain containing 48 like; coiled-coil
                     domain containing 48-like1; EF-hand domain-containing
                     protein ENSP00000381169 homolog"
                     /codon_start=1
                     /product="EF-hand and coiled-coil domain-containing
                     protein 1"
                     /protein_id="NP_001157393.1"
                     /db_xref="GeneID:685202"
                     /db_xref="RGD:1596494"
                     /translation="MESSAGDPYRRPARRAQWLLSALAHHYGLDRGVENEIVVLATGL
                     DQYLQEVFHHLDCRGAGRLPRADFRALCAVLGLNADGEAAKEDANSTEVAAKNPATGM
                     IAGGDADVREEALLALRADPPELTFRQFHARLCGYFSSRAGSRLPRGALSEHIETQIR
                     LRRPRRRRRPGSPSLHGGAYGERVAHLEEENSSLRELVEDLRAALQSSDARCLALQVG
                     LWKSQSDIPEAAAHELQRAQGALAEAEARARRLQRGQVEVRLRTEEARQAVRRSLHRV
                     RELESLARRVPRLQRQVQRLEAELRRYRSEGPQLLTPPQTSPRPGNKNGEPTARGTRD
                     SDTTSEGVLQSDTKEEQLFRSVEGQAASEEEEEERWQEKPGRPQAHSEVPLMQPSGCV
                     NRCDDQTAETLKASFGHCDGAEHVCTLELEPHVTRLGEQLQTLGCNPFYQAELQQMVE
                     TEHLRLELQMVETERVRLSLMEEKLVDVLQLLQRLRDLNISKRALGKMLLNALDQNPS
                     QEGTRGTLAILDTLHQALVGCELLQRNPSAPASKAPAHTNPFLVSC"
     exon            673..935
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1066
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1205
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1336
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1488
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1489..1552
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1553..1689
                     /gene="Efcc1"
                     /gene_synonym="Ccdc48; Ccdc48l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaggagcc gccgaggtcg aggcatggag agctcggcgg gagacccata ccggcggccc
       61 gcgcggcgtg ctcagtggct gctgagcgcc ttggctcacc attacgggct ggaccgcggc
      121 gtggagaacg agatcgtggt gctggctacc ggtctggacc agtatctgca ggaggtcttc
      181 caccacttgg actgccgggg cgctggccgc ctgccgcgcg ccgacttccg tgcactctgc
      241 gcggtcctgg gactgaacgc tgatggggag gcggccaagg aagacgcaaa ctccacggag
      301 gtggccgcca agaacccggc tactgggatg atcgctggcg gagacgcgga cgtcagggaa
      361 gaggcgctcc tggctttgcg ggccgatcct cctgaactca ccttccgcca gttccacgcg
      421 cgcctctgtg gctacttcag tagtcgagcg gggtcccggc tgcctcgcgg agctctgagc
      481 gagcacatcg agacgcagat ccgcctccgc cgtccgcgcc gccgccgccg gcctggctca
      541 ccgagcctgc acggtggcgc ctatggcgag cgcgtggcac atctagagga ggaaaacagt
      601 agcctacgcg agttggtgga ggacctacgt gctgcgctgc agagcagtga cgcgcgctgc
      661 ctggcccttc aggtcggcct ctggaaaagc cagtcggaca tcccggaagc ggcggcgcac
      721 gagctgcagc gagctcaggg agcgctggca gaggcggagg cgcgcgctcg acggctgcag
      781 cgaggacagg tggaggtgcg gctgcgcact gaggaggccc ggcaggcggt ccggcgcagc
      841 ttgcaccgag tgcgagagct ggagtcgctg gcgcggcgcg ttccccgctt gcagcgccaa
      901 gtgcagcgac tggaggcaga gcttagacgt taccggtcag aagggcctca gctcctaaca
      961 cccccacaaa ctagtccaag gccaggaaac aagaatggtg aacctacggc tagaggcacc
     1021 agagattcag acaccacttc agagggagtc ctgcagtcag acaccaagga agaacagctg
     1081 ttccgctccg tggaaggcca ggctgcctct gaggaggaag aggaagaaag gtggcaggaa
     1141 aagccagggc gcccacaggc ccacagcgag gtacccctga tgcaaccctc aggctgtgtg
     1201 aacaggtgtg atgaccagac agctgagacg ctcaaggctt ccttcggcca ctgtgatggt
     1261 gctgagcacg tctgcaccct agagctggaa cctcatgtca ccaggcttgg ggaacagctg
     1321 cagaccctgg gctgcaaccc tttctaccag gcagaactgc agcagatggt ggaaactgag
     1381 catctgaggc tggagctgca gatggtggag acggagaggg tccggctgtc gctgatggaa
     1441 gagaagttgg tggatgtgct acaactcctg cagaggctcc gggacctgaa catatcaaaa
     1501 agagcactgg ggaagatgct gctgaatgcc ctggaccaga acccctcaca ggagggtaca
     1561 cggggcacct tggccatcct ggacaccttg caccaagcct tagttggctg tgagctccta
     1621 cagagaaacc cctcagcacc agcatccaag gctcctgcac atacgaaccc cttcctcgtc
     1681 tcctgctga
//
