LOCUS       NM_001191091             688 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus EF-hand calcium binding domain 9 (Efcab9), mRNA.
ACCESSION   NM_001191091 XM_001067118
VERSION     NM_001191091.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Hwang,J.Y., Mannowetz,N., Zhang,Y., Everley,R.A., Gygi,S.P.,
            Bewersdorf,J., Lishko,P.V. and Chung,J.J.
  TITLE     Dual Sensing of Physiologic pH and Calcium by EFCAB9 Regulates
            Sperm Motility
  JOURNAL   Cell 177 (6), 1480-1494 (2019)
   PUBMED   31056283
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 1, 2022 this sequence version replaced NM_001191091.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.62108.1,
                                           SRR26360181.1079326.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               JAXUCZ010000010.1  17616394-17616566   c
            174-322             JAXUCZ010000010.1  17613043-17613191   c
            323-499             JAXUCZ010000010.1  17612171-17612347   c
            500-688             JAXUCZ010000010.1  17611472-17611660   c
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..688
                     /gene="Efcab9"
                     /note="EF-hand calcium binding domain 9"
                     /db_xref="GeneID:688481"
                     /db_xref="RGD:1588807"
     exon            1..173
                     /gene="Efcab9"
                     /inference="alignment:Splign:2.1.0"
     CDS             38..688
                     /gene="Efcab9"
                     /note="EF-hand calcium-binding domain-containing protein
                     9-like"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 9"
                     /protein_id="NP_001178020.1"
                     /db_xref="GeneID:688481"
                     /db_xref="RGD:1588807"
                     /translation="MKLTQGSFLWYLYMDKIYCLLSLRNVKALMEYFHLLDVHHRNTL
                     NDVLFFHFLRHVTNLRSSQIKMIFDLLDWTAVGEIGFDQFYVLVCILLAHQNHLEDHF
                     MYRHSRPVFDLLDLDGELNIGVTNFQNYRFLFNIKKQELRDLFHDFDITGDRLLNYKE
                     FKLYTIFCTDKSIDRKKRRKEREEVREKEKDKGKDKEKYLHLKKLYSSVLSHRSLL"
     exon            174..322
                     /gene="Efcab9"
                     /inference="alignment:Splign:2.1.0"
     exon            323..499
                     /gene="Efcab9"
                     /inference="alignment:Splign:2.1.0"
     exon            500..688
                     /gene="Efcab9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcaggttgc cagagcctct ggccgaaagc tgcagccatg aaactgactc aggggtcttt
       61 tctgtggtac ctttacatgg acaaaatcta ctgtttgctg tcgttgagaa acgtgaaggc
      121 tttgatggag tactttcacc ttctcgacgt gcaccacagg aacaccttga atgatgtgtt
      181 gttctttcat ttcctccgcc acgtgactaa cctgagaagc tcacagatca agatgatatt
      241 cgacctccta gactggacgg ctgtaggaga gatcggtttt gaccagttct acgtgctggt
      301 ttgcatactg ctggcacatc agaaccatct ggaagatcac tttatgtacc gccattcccg
      361 gcctgttttc gatctgcttg atttggacgg ggagttgaat ataggtgtga ccaatttcca
      421 aaactacagg tttctcttca atattaaaaa gcaggaactc cgagaccttt tccatgattt
      481 tgacatcaca ggtgaccgac tacttaatta caaggaattt aagctgtaca caatcttctg
      541 cacggacaaa tccatagaca gaaagaaaag gaggaaagaa agagaggaag tgagagagaa
      601 agaaaaagac aaagggaaag ataaagagaa gtatcttcat ctcaagaagt tgtattcatc
      661 cgtgttaagc cacaggagtc tcctgtga
//
