LOCUS       NM_001191866            2157 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus EF-hand calcium binding domain 7 (Efcab7), mRNA.
ACCESSION   NM_001191866 XM_342870
VERSION     NM_001191866.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2157)
  AUTHORS   Pusapati,G.V., Hughes,C.E., Dorn,K.V., Zhang,D., Sugianto,P.,
            Aravind,L. and Rohatgi,R.
  TITLE     EFCAB7 and IQCE regulate hedgehog signaling by tethering the
            EVC-EVC2 complex to the base of primary cilia
  JOURNAL   Dev Cell 28 (5), 483-496 (2014)
   PUBMED   24582806
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 17, 2010 this sequence version replaced XM_342870.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.28651.1,
                                           SRR26643289.15596.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                JAXUCZ010000005.1  119641025-119641116
            93-280              JAXUCZ010000005.1  119643042-119643229
            281-492             JAXUCZ010000005.1  119654376-119654587
            493-579             JAXUCZ010000005.1  119655432-119655518
            580-775             JAXUCZ010000005.1  119656539-119656734
            776-894             JAXUCZ010000005.1  119657165-119657283
            895-1036            JAXUCZ010000005.1  119663365-119663506
            1037-1146           JAXUCZ010000005.1  119668953-119669062
            1147-1304           JAXUCZ010000005.1  119672420-119672577
            1305-1438           JAXUCZ010000005.1  119673516-119673649
            1439-1587           JAXUCZ010000005.1  119683819-119683967
            1588-1797           JAXUCZ010000005.1  119688372-119688581
            1798-1905           JAXUCZ010000005.1  119689693-119689800
            1906-2157           JAXUCZ010000005.1  119691314-119691565
FEATURES             Location/Qualifiers
     source          1..2157
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..2157
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /note="EF-hand calcium binding domain 7"
                     /db_xref="GeneID:362549"
                     /db_xref="RGD:1561825"
     exon            1..92
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            93..280
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..1980
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 7"
                     /protein_id="NP_001178795.1"
                     /db_xref="GeneID:362549"
                     /db_xref="RGD:1561825"
                     /translation="MASNPGSDAALDTQKSVLSGSPRTKKFPLTEQEVFYMNCRAAYL
                     TIFKSSLENIMSKDQLYLALQHAGRNPSQKTINKYWTPQTAKLNFDDFCIILSKEKPT
                     SKADLLKSFKQLDVNDDGSILHSDLHKYLTKRGEKMTQEEVNAVISLADVNANGKFDY
                     VKFCKLYMATSEQCLKTTLERLEADSKLRRQQFGSQMEGSPERDPSPVPKPSPRIIRK
                     NDQETFSSKGDTSHTLLSTTRKFKTSVSFTMPMSANSNRDSTLTEPNLKDWQCAQSRG
                     CFFLEEDGEVVSHQYKMHIAQRSVLYLTIKPLNLSQVEGKHSPWLSVDTALYILKKNE
                     NPAEAQLMCFTELRNREVFGWTGELEPGIYWLIPSTTGCRLRKETKPVTEEVQLVHRD
                     ETGELSLTSEFRSTLSEIFEIIDLDGNGLISLEEYNFFELRTSGEKCDEDAWAVCREN
                     FDTKKNELTRQGFMDLHLMEANDREGDPLDLWVTLHSMGYNTALELTEACPFVINVYA
                     ERCKPRIKAVHMEACSGQLERAICKSVLDRSNAKVMDGYENIVVHTCNQDSWITSIIE
                     NKSDDKVIIHINNELSKNCVNNRGLNIFAVEVAPRSTMVCQHVMPLNEEQEWIYCCVY
                     SLVS"
     exon            281..492
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            493..579
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            580..775
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            776..894
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1036
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1146
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1304
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1438
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1587
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1588..1797
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1798..1905
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
     exon            1906..2157
                     /gene="Efcab7"
                     /gene_synonym="RGD1561825"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaaaggcgg aggtctgtcg ggttgcgctg agaggttcgc ggaactacta aagaaaattg
       61 gctgctcttc ttggtttgtg agctgaaatt agaatggcca gcaatcctgg aagtgatgca
      121 gctttggata ctcagaagtc agtgctttca gggagtcctc gaacaaagaa attcccacta
      181 actgaacagg aggtatttta tatgaattgt agagccgcct acttaaccat cttcaaaagc
      241 agcttggaaa acattatgtc taaagatcaa ctctacttag ctcttcagca tgcaggaaga
      301 aatccatctc aaaagaccat taataagtat tggactcctc aaactgccaa actaaatttt
      361 gatgattttt gtataatttt aagcaaggaa aaacctactt cgaaagcaga cttactaaaa
      421 tcatttaaac aattagatgt aaatgatgat ggctctatcc tacactctga ccttcataaa
      481 tatctaacca agagaggtga gaagatgact caggaagaag taaatgctgt aataagtttg
      541 gctgatgtaa atgctaatgg aaagtttgac tacgttaagt tttgtaaatt atacatggca
      601 accagtgagc agtgtctcaa gactacacta gaaagactgg aggccgacag taaactgagg
      661 cgtcaacagt ttggaagcca aatggaaggg tcccctgaaa gggatccatc accagtacca
      721 aaaccatcac ctaggatcat aagaaaaaat gaccaagaaa cgttctcaag caaaggtgac
      781 acaagccaca ccttactgtc aacaactaga aagttcaaga catctgtttc cttcacaatg
      841 cctatgagcg ctaacagtaa ccgagactca acattaactg aaccaaactt aaaggattgg
      901 cagtgtgcac aatcaagagg ctgcttcttt ttagaggaag atggtgaagt tgtcagtcat
      961 cagtacaaaa tgcacatagc tcagagatct gtgctttacc tgacaattaa gccattgaat
     1021 ctgagtcaag ttgaaggaaa acattctccc tggttatcgg ttgatacagc cttatatatt
     1081 cttaagaaaa atgagaatcc agcagaggca cagctcatgt gttttaccga actacgaaac
     1141 agagaagtgt ttggatggac tggtgaacta gaaccaggaa tttattggct aattccttcc
     1201 acaactggat gtaggctaag aaaagaaaca aaaccagtaa cagaagaagt ccaacttgta
     1261 catagagatg aaacagggga attatctctt acaagtgagt ttaggtcaac tctatcagag
     1321 atatttgaaa taattgattt agatggcaat ggtcttatta gccttgaaga gtacaatttt
     1381 tttgagttga gaacaagtgg tgaaaagtgt gatgaggacg cttgggctgt ctgcagagaa
     1441 aactttgaca caaagaagaa tgaattaaca agacagggct ttatggactt gcatctaatg
     1501 gaagcaaatg accgagaagg agaccctctt gacctgtggg tgactctaca ttccatgggc
     1561 tacaatacgg ctctggagct gacagaggca tgcccgtttg tcatcaatgt ctatgcagaa
     1621 aggtgcaagc caaggattaa agctgtgcat atggaggcat gcagtgggca gcttgagagg
     1681 gccatttgca aatctgtcct tgatagaagc aatgctaaag tcatggatgg ctatgagaat
     1741 atagtcgtgc acacttgcaa tcaagactca tggataacat caattattga aaataagtca
     1801 gatgacaaag tgattattca catcaacaat gaactgagta aaaactgtgt caacaacaga
     1861 ggactcaaca tctttgcagt agaagtggca ccaagatcta caatggtttg tcaacatgta
     1921 atgcccctga atgaggaaca agaatggata tattgttgtg tgtattctct tgtatcttaa
     1981 agaattccat ttggagctat caagctaaga agtattttag atcaaatatt ttatttatta
     2041 actacatgct tttccatgta actggtatac ttaataatct gtttcatttc tatgcattta
     2101 tattttatgt ccatgttata tattttatta ttaaaataca aatagtgttt taaaagt
//
