LOCUS       XM_039080310            5036 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EF-hand calcium binding domain 6
            (Efcab6), transcript variant X2, mRNA.
ACCESSION   XM_039080310
VERSION     XM_039080310.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 12, 2024 this sequence was replaced by
            NM_001427211.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5036
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5036
                     /gene="Efcab6"
                     /note="EF-hand calcium binding domain 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 7 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:315179"
                     /db_xref="RGD:1309065"
     CDS             206..4735
                     /gene="Efcab6"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 6 isoform X1"
                     /protein_id="XP_038936238.1"
                     /db_xref="GeneID:315179"
                     /db_xref="RGD:1309065"
                     /translation="MKRNGARLNAAKVNSTKSGSTKARDLMYKMSVLPEWHSLYLNTR
                     KLPCARPHSSPCRTQRPIVHDLCRPFSSTTALANPVLSSLDVERILSQKISSKRDEIK
                     KVFQILDPNHSQTVTKGELKRTITAFLMPLTKDQFQDLLAQIPITSLGNVPYLEFLSR
                     FGGIDININGIKRVNENEVDNGQTLKEIQLTEKIFRNMRTIRKVFQLIDVNNTGTVQP
                     QELRRVLETFCLKMKDEDYEMFSKQYNINSTTAVDYNAFLKNLSVKNETNFKHLLSNP
                     EPSKENQQGKIAKRLTDATSSEDIWKNYSLDDLEKTFCQELVKSYEKIEKALSAGDPS
                     KGGYISLNYLKVVLDTFTYRLPRRTFIQLMRRFGLKTTTKVNWKQFLTAVYERQGWEV
                     SKTIPLKKRSSTEARNRFRKENIIKKLFKYSEERYTALKKALLIISPTPSGHVTWEDL
                     RHVLNCVVVKLSDSEFNELKQTFDPEGTGTVKISSLLDVLDDSPKVRKMSPSTDTKTP
                     LPVAWDSVEELVLDALTRNHQAFYGMLQSYDLGDTGSITKNNFKKVMRVFCPYLSNEH
                     LAKLSNKFQEVGSGKILYKRYLFSIGLGIPPPGSRLSSPKSQRSEQFQIEQQDERTQP
                     LRDKTTEIKNMTKEEVIDSLKRRIQQKDSVFRQEFLNISKDPDVKISQGEFRKVLERS
                     GMPMNDCQYAMLASKLGFKNEDGMSYQDFTMGFEDSMLSGLETVPLQSRPTSKMNLDE
                     HFVSAEECLRIFPKKLKDSFRDSYAAFFRIDTDRDGIISMHDLHRLLQYLLINMMDFE
                     FERFLSLMGLRLSVTLNFREFQNLCEKRPWKSDEAPQRLIRCKQKVADSELACEQAHQ
                     YLIMKAKTRWADLSKNFIETDNEGNGILRRRDIKNSLYGFDIPLTPREFEKLWQNYDT
                     EGRGYITYQEFLHRLGIRYSPKVHRPYKEDYFNFLGHFTKPKQVQEEIQELHQISERE
                     KLLDHFEEISKALNAMEKSRPVALGRVQKVLQECGCPLKEEELIIILKSLDVSVHNNQ
                     IDPVEFLRALEISWASKPHPKEKEESSPINFSKLNPDEVIKSMQEVVESSQPALVKAF
                     SALDKEDTGFVKAMEFGDVLKSICQKLTDNQYHYFLRRLRLHLTANIHWKYFLENFSS
                     FLDETADEWAENMPKVPPPECPKETSSREILARVQKAVTSHYHTIAQEFENFDTLKSN
                     TVSRDEFRSICTRHVQILTDEQFDRLWSEMPVNAKGRLKYQDFLSKLSTERVPSPPMA
                     AGDSGDSMVAQRGSSAPEVSQGARSTLSSPSRDLRAGLKSRSHPCTPVGTPPLQNCEP
                     IESRLRKQIQGCWRELLKECKEKDTDKQGSITAAEFLALIEKFKLDISREESQQLLVK
                     YDMKNNGKFAYCDFIQSCVLLLKAKETSLMRRMRIQNADKMKEAGVETPSFYSALLRI
                     QPKIVHCWRPMRRTFKTYDENGTGLLSVADFRKVLRQFSINLSEEEFFHVLEYYDKSL
                     SSKISYNDFLRAFLQ"
ORIGIN      
        1 taggcttgag aaccagtgat ctctaggaca aggagatttc agtaggcaga gagggagaag
       61 gggagaagtg tgggtacgta gacagaggtg acagcatgtg aagacaaagg tgtctgcgtg
      121 gaagagagct tgtgtgtctc tgggaccacc agaggccagt gaggtagaga attctcagat
      181 tcacaagtat ttgatctaga aggaaatgaa gcgcaacggt gccaggctaa atgcggctaa
      241 agtcaacagc accaagtcag gcagcacaaa agcaagggat ttaatgtaca aaatgtcggt
      301 tttaccagaa tggcatagtt tgtaccttaa cacccggaag ctgccatgtg cccgccccca
      361 ctcctcgcca tgcagaactc aaaggcctat cgtccatgat ttatgcagac ccttttcatc
      421 aaccactgct ctcgccaacc cagttctgtc gtccttagac gtcgaacgga ttttatctca
      481 aaagatttcc agcaaaaggg atgaaataaa aaaagtcttc cagatactcg acccaaacca
      541 cagccagaca gtgactaagg gggagctgaa gcgcaccatc acggctttcc tcatgccact
      601 caccaaagat cagttccagg acttgctggc ccagatcccg atcaccagcc tgggtaatgt
      661 gccgtacctt gaattcctct ccaggttcgg tggaattgat ataaacatca atggtataaa
      721 gagggtaaat gaaaatgagg tagataacgg acaaacactc aaagaaatcc agctcactga
      781 aaagatcttc cgaaacatga ggactatcag gaaagtcttc cagctcatcg atgtcaacaa
      841 taccggcacg gtgcagcccc aagagctaag gcgggttctg gagacattct gcctgaagat
      901 gaaggatgag gattatgaga tgttctccaa acagtacaac atcaacagca ccactgcggt
      961 agactacaat gccttcctga agaatctcag tgttaaaaat gagacgaact ttaaacacct
     1021 actgtccaat ccagaaccct cgaaggagaa tcaacaaggt aaaattgcca agaggctgac
     1081 tgatgccacg tcgtctgagg atatctggaa gaactactcc ttagatgacc tggagaagac
     1141 cttttgccaa gagcttgtca agtcctatga aaagatcgag aaagccctga gcgcaggaga
     1201 cccctccaaa ggtggctaca tctctctgaa ttacctgaag gttgtccttg ataccttcac
     1261 gtaccggcta ccgaggagga cttttatcca gttaatgaga agatttggac ttaaaactac
     1321 cacgaaagtc aactggaagc agtttctcac agcagtttat gagcggcagg ggtgggaagt
     1381 cagcaagaca attcccctga agaaaagaag cagcactgaa gctagaaacc ggtttcgtaa
     1441 ggaaaatatc atcaagaagt tattcaagta ctcagaggag cgctacacag ccctgaagaa
     1501 ggccttatta attatcagtc cgacgcccag cggacacgta acatgggaag acctgcggca
     1561 cgttctaaac tgcgtggttg tgaagttaag tgactcagaa ttcaatgaac tgaagcagac
     1621 gtttgacccc gagggcactg gaacagtgaa gatcagctct ctgctggacg tgctggacga
     1681 cagccctaag gtgaggaaaa tgtccccttc tacagacacc aagacacctc tgcctgtggc
     1741 ttgggactcg gtagaagagt tagtgcttga cgcactcacc aggaaccacc aggcctttta
     1801 tggcatgctg cagtcatatg accttgggga cacgggatcc ataacaaaaa ataacttcaa
     1861 gaaagtcatg cgagtcttct gcccatatct atcgaatgaa cacttagcaa agctctccaa
     1921 taagttccaa gaagtagggt caggaaagat cctgtacaag agatatctgt tctccatcgg
     1981 ccttggtatc ccaccgcctg gatcccggct ttcttctcca aagagtcagc gaagtgaaca
     2041 gtttcaaatc gagcagcagg atgagagaac ccagcccctg agggacaaaa ccacggagat
     2101 caagaacatg accaaggaag aagtcatcga tagtctcaag cgccggatcc agcagaagga
     2161 ctcggtgttc agacaggagt ttcttaacat cagcaaagac cctgatgtaa agatcagcca
     2221 gggggaattt cggaaggtcc tggagagaag tggaatgcct atgaatgact gccaatatgc
     2281 aatgctagct tccaagttag gcttcaagaa cgaagacggc atgagctacc aggactttac
     2341 catgggattt gaagactcta tgctgagtgg actggaaaca gttccactgc agtcacgccc
     2401 aacctctaaa atgaatttgg atgagcactt cgtatccgct gaggaatgcc tgagaatttt
     2461 ccccaagaaa ctgaaggact cgttccggga ctcgtacgcc gccttcttta gaatagacac
     2521 agacagggac ggcatcatca gcatgcatga ccttcacaga ctgctgcagt acctgctgat
     2581 caacatgatg gacttcgagt ttgaacgctt cctcagcctc atgggcttga gacttagcgt
     2641 cacactaaac ttccgagagt ttcagaacct gtgtgagaag agaccctgga agtcagatga
     2701 ggcacctcaa agactcatta gatgtaaaca gaaagttgca gactctgagc tagcctgtga
     2761 gcaggctcat caatacctca tcatgaaagc caaaaccaga tgggcagacc tgtccaagaa
     2821 tttcatagaa actgacaatg agggcaacgg catcctccgg cgaagggaca ttaagaactc
     2881 actgtacggc tttgacatcc ccctcacccc gagagaattt gagaagcttt ggcaaaacta
     2941 tgacaccgag ggaaggggtt atatcacgta ccaagagttc ctgcacagac tgggcattcg
     3001 atactcccca aaggtccacc ggccctacaa ggaagattac ttcaacttcc tgggtcactt
     3061 cacgaagccc aagcaggtcc aggaggaaat ccaggagctg caccagataa gtgaaaggga
     3121 aaaactcctg gaccattttg aggagatcag caaggcactc aacgcaatgg aaaaatccag
     3181 gcctgtagcc ctcggtaggg tgcagaaggt gctgcaggaa tgcgggtgtc ccctaaagga
     3241 ggaggagctc atcatcattc tgaagagctt ggacgtcagt gtgcataata atcagatcga
     3301 ccccgtcgag ttcttgagag cacttgagat cagctgggcc agcaaacctc acccaaagga
     3361 gaaagaagag agctcaccca tcaacttctc taagctgaac ccagacgagg tgataaaaag
     3421 catgcaggag gtagtggagt cctcccagcc tgctttggta aaggccttct ctgccctgga
     3481 taaagaggac acggggttcg tgaaggctat ggaatttgga gatgttctca agagcatatg
     3541 ccagaagcta acagacaacc aataccacta cttcttgagg aggttaagac ttcacctaac
     3601 agccaacata cactggaaat acttcctgga gaacttcagc tccttcttgg acgagactgc
     3661 tgatgagtgg gcagagaaca tgcccaaggt cccgcctccc gaatgcccca aagaaacatc
     3721 cagcagagag atcttagcgc gagtgcaaaa ggcagtgact tcccactacc acaccatcgc
     3781 ccaggagttt gagaacttcg ataccctgaa aagcaacacg gtctccagag atgagttcag
     3841 gtccatctgc acccgtcacg tgcagatcct gacagacgag cagtttgaca gactgtggag
     3901 tgagatgcct gtcaatgcca aggggaggct caagtaccaa gatttcctca gcaagttgag
     3961 caccgagagg gtgccctcac cgcccatggc cgcaggcgac tctggagatt caatggttgc
     4021 ccagcgggga agcagcgccc cagaggtctc ccaaggggcc aggtccaccc tcagctctcc
     4081 ttctcgggac ctcagagcgg ggctgaaatc acgaagccat ccctgtaccc cagtgggcac
     4141 cccaccccta cagaactgcg agcccatcga gagcaggctc cgcaaacaga tccagggctg
     4201 ctggcgggag ctgctgaagg agtgcaagga gaaggacacg gacaagcagg gcagcatcac
     4261 cgcagcagag ttcctggctc tcatcgagaa gttcaagctg gacatcagca gggaggagag
     4321 ccagcagctc ctcgtcaagt acgacatgaa gaacaacggc aagttcgcct actgtgactt
     4381 catccagagc tgcgtcctgc tgctgaaggc caaggagacc tctctgatgc ggaggatgag
     4441 aattcagaat gcagacaaga tgaaagaagc tggtgtggag acaccttcct tttactcagc
     4501 cttgctacgg atccagccca agatcgtcca ctgctggagg cccatgcggc gtaccttcaa
     4561 gacctatgat gagaatggaa cggggctcct gagtgtggct gacttcagga aggtgctgcg
     4621 gcagttcagc atcaacctgt cggaggagga gttcttccac gtgctcgagt actacgacaa
     4681 atcgctctct tccaagattt cctacaacga ctttctgcgt gccttcctgc agtaggcatc
     4741 cagacggggc agcactgggg acagatgggc catcagggtc tgtccccaag cttagtaaaa
     4801 ccagacaatg agtgaattcc ccagagctgc ttcagaaccc aaccctacca tcaccagact
     4861 ctcaggatgt gcaggctcct gctctaaccc tcactgaggc ctctctggac ggccacaggg
     4921 cggccgctgg cctcgggcgc tctcactcgt tagtttgagc aaataaaata gtctttgtgg
     4981 gaatgactct tgagtcttta aaagaacgac gactaataaa atgttttaaa acttgg
//
