LOCUS       NM_001417684            5875 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus EF-hand calcium binding domain 5 (Efcab5), mRNA.
ACCESSION   NM_001417684 XM_006246915
VERSION     NM_001417684.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 9, 2023 this sequence version replaced XM_006246915.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.64316.1,
                                           SRR26360181.1651465.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-177               JAXUCZ010000010.1  62540697-62540873   c
            178-459             JAXUCZ010000010.1  62539791-62540072   c
            460-538             JAXUCZ010000010.1  62538762-62538840   c
            539-1076            JAXUCZ010000010.1  62528972-62529509   c
            1077-1233           JAXUCZ010000010.1  62507867-62508023   c
            1234-1282           JAXUCZ010000010.1  62505291-62505339   c
            1283-1353           JAXUCZ010000010.1  62503176-62503246   c
            1354-1509           JAXUCZ010000010.1  62486768-62486923   c
            1510-1609           JAXUCZ010000010.1  62474206-62474305   c
            1610-2704           JAXUCZ010000010.1  62471119-62472213   c
            2705-2782           JAXUCZ010000010.1  62470226-62470303   c
            2783-2875           JAXUCZ010000010.1  62470041-62470133   c
            2876-3090           JAXUCZ010000010.1  62468007-62468221   c
            3091-3247           JAXUCZ010000010.1  62466057-62466213   c
            3248-3537           JAXUCZ010000010.1  62457923-62458212   c
            3538-3707           JAXUCZ010000010.1  62454401-62454570   c
            3708-3936           JAXUCZ010000010.1  62453374-62453602   c
            3937-4089           JAXUCZ010000010.1  62451156-62451308   c
            4090-4190           JAXUCZ010000010.1  62444331-62444431   c
            4191-4444           JAXUCZ010000010.1  62443095-62443348   c
            4445-4728           JAXUCZ010000010.1  62441400-62441683   c
            4729-4825           JAXUCZ010000010.1  62440979-62441075   c
            4826-5875           JAXUCZ010000010.1  62424548-62425597   c
FEATURES             Location/Qualifiers
     source          1..5875
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..5875
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /note="EF-hand calcium binding domain 5"
                     /db_xref="GeneID:363653"
                     /db_xref="RGD:1309650"
     exon            1..177
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..5019
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 5"
                     /protein_id="NP_001404613.1"
                     /db_xref="GeneID:363653"
                     /db_xref="RGD:1309650"
                     /translation="MSASTSQIQVNQSKPAQDNGKKDKEQQQDSSKDKKEEKDERDSK
                     NKKDLKDKKEEKDEKDKKEEDKKEDKKDKKEEDKKEDKKENKKKDKKEEEDRKEEGDE
                     KEEEDDEKETSTNPSRASDTSDQGTENAKAEEKLQAGPIKDSLAVSKNVVLKKPVKVI
                     LGIDESDLKSKGQLPWKKNLNLKIEKRAQAMHQKVLENENLKKEQEKVTKKLPRDELA
                     KEWFNTESMTLNTRAYLLDKLLPTLIPGVEQMLMQVEKKKLLSQADIPSKFDPINYLG
                     EYLMRHNTHYIKDPGMSGYQRVMKEVTEELKIHVPDTINNRISKMKERVKQKREQREY
                     ISTVKVKVATMRKQALEEQFNEWILNPKGMIPIVVIQNVLYDFFQKPELHLESRCKDL
                     IIMKSVEPGLTQHQFVQYISSYIMDLKSEVFEEFLKHLCHCAEEFREIITTDMRRQMF
                     AELFLYCDSGKVMALDRQRTLALLEAFFDKTSSTTRSLLRNPRQWPFVEFEEIELTEF
                     WGDMDIKKHIYENFDELLLKMNMLAAEKLSGKLTEDKDKNLSQPQEEISTDQELSPEL
                     ATEPGTATQETAKQKTHRASLKEQGQGIGLRKPSTSRQRLSRGSVAEQGSRRGSVVNQ
                     TQQRGSVAQQGSRRSSGVNQTQQRGSVAEQGSRRSSGVNETQQRETVAEQGSRRISTA
                     EQEPQTEQDPNRDSVPEQEPPRGSVTEEGSQRGSISEPGQRRKSFVGDSSTSLEAESR
                     RGSVIDQGQRRASGGQRKGSGGRKMSVSENGPYQESIKEEPLGESEHGPQIDTIQEQD
                     ADSAPQLEEGGTLEESKTLESNIVKSQEKKPSLLTHEKQVPMDSEQQREEVPTSSKKE
                     RPPGTSKKDSQKDKACEPKPQHIEGKKWLGEFLMSDWKMKYIKSEDEEQAKLICDDSR
                     FTDLHATIRSFQTYKGIKGRSAFDGVSLDLLQFVQLLETFVGEDTSLSVSQSLVSFFQ
                     KNFSETKQEKIKALEQARRNSFQVRRKILLEALFEKWDNDGSGFLDLNEIDDLLYTYK
                     EGMERESMKKAKLHINFPKPSPGHEVKLSSKQFQRYIELVVSELRGNEDQVLENVVEF
                     LMSSLERTHTEGLRNCARRKWLHQIQHAAETSGVSLEPVYTETFRALTQDAEAHGNKK
                     ISAHISLLEENVLLPERGHVLLRNVACTLDDAPFVLNKVLYRDMKGISFTVVDEGKPI
                     HVPQVQHHGNIFFWNSTRSKNEQNGSFLALPLQDAYMRIFGVLAVDTLRDPREINIFL
                     PHEIRFYQGVANAFSAAYHYVHSREHILHTVLTGIRWLFGITAGITTITMCFTEPSSE
                     QEDYVLRNMMLTDHLGVAEIHADPPTISRRACIFRDFLFKCTDTSEVILASSGGETHI
                     AIPLRQISGEAIGVLDVNIGRSRMLVYQEYKDLQKMMKMIQNVSYEILGEVSGEIEKQ
                     MVLEMEVAGEVKRAAILFFRTMLQDLRGCLRLLDSMEFVSLLLYEHKHSVDFLQEDLS
                     PQEVEANVTLIHDILKGVILFSQQDKDPFRDLEEWERWKFHINKYLVEEICALDPTAS
                     NVEINVELITRYIQDHSRTQVWKFKNIVIELLYHWISICLTLIELNTQQDSFIVPPLP
                     KKSTTTIYAMSSERSFREKL"
     exon            178..459
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            460..538
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            539..1076
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1077..1233
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1282
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..1353
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1509
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1609
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            1610..2704
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            2705..2782
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            2783..2875
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            2876..3090
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            3091..3247
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            3248..3537
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            3538..3707
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            3708..3936
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            3937..4089
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            4090..4190
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            4191..4444
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            4445..4728
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            4729..4825
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
     exon            4826..5875
                     /gene="Efcab5"
                     /gene_synonym="RGD1309650"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gatgatggag atgttcatca ttcacagtat ttctgctgct tgttagcatt ttctttcgct
       61 cttttggtta caaatactgt atggtttact tctcagtatc attcggtggc ttctcttagt
      121 ggccaaatga gtgcatcaac gtctcagatc caagtgaacc agtccaagcc tgctcaggac
      181 aatggaaaaa aagataaaga acagcagcag gactcctcaa aggacaaaaa ggaagaaaaa
      241 gacgaaaggg actcaaagaa taaaaaggac ttaaaggaca aaaaggagga gaaggacgag
      301 aaggacaaga aagaggagga caaaaaggag gacaaaaagg acaagaaaga ggaggacaaa
      361 aaggaggaca aaaaggagaa caaaaagaag gacaagaaag aggaggagga tagaaaggag
      421 gaaggtgatg aaaaggagga agaggacgat gaaaaggaga catcaacaaa tccatcccgt
      481 gcatcagaca ctagtgacca agggacggaa aatgcaaagg ctgaggagaa actgcaagct
      541 ggtccaataa aggactccct tgcagtctcc aagaatgttg tgcttaaaaa acctgtaaaa
      601 gtgattcttg gcatagatga aagtgatctg aagtccaaag gacagctgcc gtggaagaaa
      661 aatcttaatt tgaagataga gaagagggcc caggccatgc atcagaaagt cttagagaac
      721 gagaacctga agaaggaaca ggagaaggtc acgaaaaagc tccctaggga tgaattggct
      781 aaagagtggt tcaatactga aagcatgacc ctgaataccc gggcatactt gctggacaag
      841 cttctaccca ccctgattcc tggagtggaa cagatgctga tgcaagtgga gaagaagaag
      901 cttttgagcc aagctgacat cccaagcaag ttcgatccga ttaattattt gggggaatac
      961 ttaatgagac acaatactca ttatatcaaa gacccaggaa tgtctggcta ccagagggtg
     1021 atgaaagagg tcacagaaga actgaagata catgttcctg atacgatcaa caacagaata
     1081 tccaagatga aggagagagt gaaacagaag agagaacaaa gagagtatat aagcacagtc
     1141 aaagtcaagg tggccaccat gagaaagcag gctctggagg agcagttcaa tgaatggatt
     1201 ctcaacccca aaggaatgat tccaatagtc gtgattcaga atgtccttta tgattttttt
     1261 cagaagccag agctgcatct tgaatcgcgt tgcaaagatc tgattatcat gaaatcagtg
     1321 gagccaggat tgacccagca tcagtttgta caatacattt cttcatacat tatggacttg
     1381 aaaagcgaag tgtttgagga attccttaag cacctgtgcc actgtgcaga agagttccgg
     1441 gagatcataa cgactgacat gcggaggcag atgtttgctg aactcttcct atactgcgac
     1501 agtgggaagg tgatggcctt ggatcggcag aggacactgg ccttgctgga agcgttcttt
     1561 gataaaacct cttccaccac taggagttta ctccgaaacc caaggcaatg gccatttgtc
     1621 gaatttgagg agatagagtt gactgagttc tggggagaca tggatattaa aaagcacatt
     1681 tatgaaaact ttgatgaact gctcttaaag atgaatatgt tagctgctga aaaactttca
     1741 ggcaaactca cagaagacaa agataaaaat ctctcacaac cgcaggaaga gatcagtacg
     1801 gaccaagagc tttcaccaga gttagcaacg gagccaggaa ctgccacaca agaaaccgcc
     1861 aaacagaaaa cccacagggc gtcacttaaa gaacaaggac agggcatagg acttcgaaaa
     1921 ccatctactt caagacaaag actaagcaga gggtcagtgg cagagcaagg atcccgcaga
     1981 ggctctgtag tgaaccaaac acagcagaga gggtcggtgg cacagcaagg atcccgcaga
     2041 agctctggag tgaaccaaac acagcagaga gggtcggtgg cagagcaagg atcccgcaga
     2101 agctctggag tgaacgaaac gcagcagaga gagaccgtgg cagagcaagg atcccgcaga
     2161 atttcaaccg cagaacaaga gccacaaaca gagcaagacc caaacagaga ttcagtgcca
     2221 gaacaagaac cgcccagagg atcagtcaca gaggaaggat cacagagagg gtcaatttca
     2281 gaacctgggc aacgcagaaa gtcatttgta ggtgactcta gtacttcttt agaagcagag
     2341 tcgcgcaggg gatcagtgat agatcaagga cagcgcagag catccggagg gcagcgcaaa
     2401 gggtcaggag gacgcaaaat gtcagtttcg gaaaatggac catatcaaga gtccataaaa
     2461 gaggagcccc tcggtgagtc agaacatgga ccacaaatag acaccattca agaacaggat
     2521 gcagactcgg ctccacaatt agaagaaggt ggcaccttag aagaaagtaa aaccttagaa
     2581 tccaatatag tgaaatctca agaaaaaaag ccttcgctgc tcacgcatga aaaacaagtc
     2641 cccatggatt ccgaacagca gcgtgaggaa gttcccacat ccagcaaaaa ggaacgtcca
     2701 ccaggaactt caaaaaagga ttctcagaaa gacaaagcct gtgaaccaaa gccccaacac
     2761 atcgaaggga agaaatggtt aggagaattt ttgatgagcg actggaagat gaagtacatc
     2821 aaatctgaag atgaggaaca ggccaaatta atctgcgacg actccagatt tacagactta
     2881 catgcaacta ttaggagttt tcagacttac aagggaatca aagggaggag tgctttcgat
     2941 ggagtctccc tggatctgct gcagttcgta cagctcctgg agacatttgt tggtgaagac
     3001 acctccttaa gtgtcagcca gagcctcgtc tccttttttc agaagaactt ttctgaaaca
     3061 aagcaagaga aaattaaagc cttagaacag gctagacgga attccttcca agtccgacgg
     3121 aagattctcc tggaagccct ctttgagaag tgggacaatg atggctcagg ctttctggat
     3181 ctgaatgaaa ttgatgatct cttgtataca tacaaggagg ggatggaaag agaatctatg
     3241 aagaaagcta aactgcacat aaactttcca aagccgagtc ctggtcatga agtcaaactg
     3301 tcttcaaagc aatttcagag gtacatagaa ctggtcgtat ctgaactcag gggcaatgaa
     3361 gaccaagttc tggaaaacgt tgtggaattc ctgatgagtt ctttagagag gacccacact
     3421 gagggtctaa ggaactgtgc aagacggaaa tggctccatc agatccaaca tgctgcagag
     3481 acaagtgggg tgtccctgga gccggtgtac actgaaacct tcagggccct cacccaggat
     3541 gctgaagctc acggaaataa gaagatcagt gctcacattt ccctcctaga ggagaacgta
     3601 ctcctgcctg agagagggca cgttctcttg aggaatgtgg cttgcactct agatgatgct
     3661 ccgtttgtcc tgaacaaagt gctgtacagg gacatgaagg gaatcagctt tacagtagtg
     3721 gatgaaggca agccaatcca tgtgccccaa gttcagcacc atggaaacat cttcttctgg
     3781 aacagtaccc gaagtaagaa tgagcagaat gggtcgttcc tggccctgcc tcttcaggat
     3841 gcatacatga ggatcttcgg ggtcctggca gttgacacgc tccgagatcc tcgtgaaata
     3901 aacatcttct tacctcatga gatcagattc tatcagggtg ttgccaatgc cttcagcgcg
     3961 gcttatcact acgttcacag cagggaacac attctgcaca ctgtgctcac cggcatcagg
     4021 tggctcttcg gtatcacggc tggcatcacc accatcacta tgtgcttcac cgaacctagc
     4081 tcagaacagg aagactatgt cttgcgcaat atgatgctta cagatcatct cggtgtagca
     4141 gaaatccatg cagatccccc cactatctcg aggagagcgt gcatcttcag ggacttcctc
     4201 tttaaatgca cagacacttc agaagttatt ttggcttctt ctggtggaga aacccacatt
     4261 gccattccac ttcgccagat aagcggagag gctataggtg tcctcgatgt taacattggc
     4321 cggagtcgga tgctggtata tcaagagtat aaagacctac agaaaatgat gaagatgatc
     4381 caaaatgtct cctatgaaat actgggcgaa gtctctggag aaatcgagaa acaaatggtt
     4441 ttagagatgg aagtggcagg agaggtgaag cgggcagcga ttctcttctt ccgaaccatg
     4501 ctgcaggacc tgcgggggtg cctccgcctc ctcgactcca tggagtttgt gtcgctgctg
     4561 ctctatgagc acaagcactc tgtcgacttt cttcaagaag acctcagtcc ccaggaggtg
     4621 gaagccaacg tgacacttat acacgacatc ctgaaaggag tcatcttgtt ctctcagcag
     4681 gacaaagacc ctttcaggga cttggaagag tgggaaagat ggaaatttca cattaacaag
     4741 tacttagtgg aggagatctg tgcgcttgat ccaactgcta gcaatgtgga aatcaatgta
     4801 gagcttatta caagatatat ccaagatcat tctcgaactc aagtctggaa attcaagaac
     4861 attgtcattg aactcctgta ccactggata agcatttgct taactctgat agagctaaat
     4921 acccaacagg atagttttat tgtacctcca ttgcccaaga agagcactac cactatttat
     4981 gcaatgtcct cggagagatc gtttcgagag aaactgtaag gattggtacc atatcaggac
     5041 atgtagatgg tgtccaatgc tgttaactat gaactatttc caactgtaaa gaatgccctt
     5101 tagacatatt ctgctccccg aaattcagcc cagtactctc caaagccatg agtgctacct
     5161 aagggagaaa tgctatctga agaatgtgca ctaacgatga ccggaaccga gcgtatcaga
     5221 atacagaata gaatgtattc tagttggagc tttctgtgta attggagacg gtgctggctg
     5281 tttgggaagt tgctttccat tcatttaaac aacagaataa atagtgctga gagtccgggc
     5341 aggcagaaat ggcagctttt acatcaaaag agtaccaaac aataaagatt tgaagaaatg
     5401 gacttgtaac ttttttagat tttttttggt caaagattat ccaaaaactc catctcttct
     5461 ccgtctcttc tttccttaac aatttaaaag tcacttttct atttctgctt gtttgttaga
     5521 aacagaatct ctgtatattt ctgaggctac cctggaactg gacatgtagc ccaggctggc
     5581 tttgaacccc cgatatccct gcctcagcac cctgagggct gtgagtataa ttatgtaccc
     5641 tgccacaaac atcgcttcaa tgatcaggaa atgtttgtcc atggctcacg ggataaagaa
     5701 aacatccatt tttattaaca aaaacttatc gagtttataa ccacagaaga atttatattt
     5761 acccaaagct gttattacag cgaacttcac tgctgtgttg taagatttca tctctgtaag
     5821 aaaatatcgg acaaagatga caaaccccgt ttttaataaa aattgggaaa ttaaa
//
