LOCUS       NM_001013972            1763 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus EF-hand calcium binding domain 3 (Efcab3), mRNA.
ACCESSION   NM_001013972 XM_001066543 XM_001081556
VERSION     NM_001013972.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1763)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1763)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001013972.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC127522.1, SRR26643293.66671.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-301               JAXUCZ010000010.1  90546569-90546869
            302-386             JAXUCZ010000010.1  90547962-90548046
            387-463             JAXUCZ010000010.1  90550211-90550287
            464-607             JAXUCZ010000010.1  90555015-90555158
            608-679             JAXUCZ010000010.1  90558759-90558830
            680-800             JAXUCZ010000010.1  90561230-90561350
            801-982             JAXUCZ010000010.1  90563593-90563774
            983-1167            JAXUCZ010000010.1  90564139-90564323
            1168-1290           JAXUCZ010000010.1  90566683-90566805
            1291-1763           JAXUCZ010000010.1  90576670-90577142
FEATURES             Location/Qualifiers
     source          1..1763
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1763
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /note="EF-hand calcium binding domain 3"
                     /db_xref="GeneID:303589"
                     /db_xref="RGD:1305423"
     exon            1..301
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            302..386
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     CDS             319..1617
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 3"
                     /protein_id="NP_001013994.1"
                     /db_xref="GeneID:303589"
                     /db_xref="RGD:1305423"
                     /translation="MAISGFKGTLKLKPLKTPVFYKRDKDFRGYFSGHLQHKETKLSP
                     AQLEAFRNAYNFFTKDRTGCIDSHGLMSTVAKLGMNLNAYDIYNELKCADRDRDGKIN
                     FSDFIDVLTDKKLFLKAVVPEKRICLDLANNPGILLFEILSKFVEISALHRKDIIELV
                     SYFRKKFQESNSEILWSPYGRRAFKTDICSPPRSSTAAFANSARISIMKERDLYKFLE
                     ALKRCNLRTDSPYSKIPVFPLFPDVDGVVLGKPFKDTQKLEMLRKREPLSFFEDYFFN
                     KRDWKTQAMNVKPLKSASGYSDDILAIDQLFKKKQHWTVSDAVALKQHVKRATDTYHL
                     GIALDHRKEMLNLWKKIRGDLVGLESNNESFYNTFSTYTWSWNVCQELLSAKDLRLHD
                     ANVNKTSPSNSGLSSPSDLSESDPETGRKRKRKSSRGFRQ"
     exon            387..463
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            464..607
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            608..679
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            680..800
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            801..982
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            983..1167
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1290
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1763
                     /gene="Efcab3"
                     /gene_synonym="RGD1305423"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tttcttcctg gtttaaccgt acttgctgat tcagaattcc caagttagca acccaatctg
       61 ctagtcggtg aacctccaga taaactctgt agtttcgaaa gctaacagcc cctggcctgc
      121 agactgtgtt tcttagacta tgcagaaggg gaaagcgagg actagagaaa ccgtatcagc
      181 aaaaacagtc tatgcgagag gctacccatt ctgcttttat gggaaagcag tgagctctta
      241 attgccagag cagggacgtg tgttccagaa ggaaatcctc agaaaacata cttactacat
      301 gacagagttt ctgaccacat ggcaatctcg ggatttaaag gcacgctgaa gctgaaaccc
      361 ttaaaaacac ctgtctttta caagagagat aaagattttc gagggtattt ctcaggccat
      421 ttacaacaca aagaaacaaa gctgagcccg gcacaactgg aagccttccg taacgcttac
      481 aacttcttca ccaaggacag aaccggctgt attgattcac acggattgat gagcactgta
      541 gcaaaactgg gaatgaatct aaacgcatac gatatctaca atgaattaaa atgtgccgat
      601 cgtgacaggg atggtaagat caacttctca gattttatag atgtgctgac agataagaaa
      661 ctcttcctca aagctgtggt tccagaaaag agaatatgct tagatttagc taacaatcca
      721 gggatcttat tgtttgaaat cctatcaaag tttgtagaga tttcagccct gcacagaaag
      781 gatataatag agttagtaag ctatttccgg aaaaagttcc aggaaagcaa ctcagaaata
      841 ctgtggagtc cgtacgggag aagggccttt aagacagaca tatgctctcc tcctcgctca
      901 agcactgctg cctttgccaa ctctgccagg atctcaataa tgaaagaacg ggatttgtat
      961 aagtttcttg aagcgctcaa acggtgtaac ctccgtacag atagcccata ctcaaaaata
     1021 cctgtgtttc cattgtttcc tgacgtggat ggggtggtgt tgggaaagcc attcaaagac
     1081 acacagaaac tagaaatgct aaggaaaagg gagcctctgt ctttttttga ggactatttt
     1141 ttcaataaaa gagattggaa aacacaggcc atgaacgtga aacctctcaa gtctgcctca
     1201 ggttattcag atgacatctt agccattgac cagctattca agaagaagca acattggact
     1261 gtgtctgatg cagtcgctct caaacagcat gtaaagagag ccacagatac ttatcactta
     1321 ggaattgccc ttgaccaccg gaaagaaatg ctgaacctct ggaagaagat ccgaggggat
     1381 ctggttgggc tggaaagcaa caatgagtcc ttttacaata ccttctctac ctacacctgg
     1441 tcgtggaacg tgtgccagga gctgctctcc gctaaggact tgcggttgca cgacgctaac
     1501 gtgaacaaaa cctccccctc caactcgggg ttatcttccc catctgacct cagtgagtct
     1561 gacccggaga cgggaaggaa aaggaaacgg aaaagttcca gaggctttcg gcaatgaaaa
     1621 gcctacattt ttctaaacaa ctctccgaaa actgctttcc agtgtaatca aaattatggc
     1681 ttcttgcttt tatttactac attcttagca ggtggaaata ttgacatctt ttggatacga
     1741 ccagtaaaaa aaaaaccttt aaa
//
