LOCUS       XM_002727823            1222 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EF-hand calcium binding domain 15
            (Efcab15), transcript variant X1, mRNA.
ACCESSION   XM_002727823
VERSION     XM_002727823.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002727823.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002727823.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1222
                     /gene="Efcab15"
                     /note="EF-hand calcium binding domain 15; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:100361655"
                     /db_xref="RGD:2319718"
     CDS             45..1202
                     /gene="Efcab15"
                     /codon_start=1
                     /product="spermatogenesis-associated protein 21 isoform
                     X1"
                     /protein_id="XP_002727869.2"
                     /db_xref="GeneID:100361655"
                     /db_xref="RGD:2319718"
                     /translation="MEGSRGQKTKRPPTTLRRPPQKPRNILMRDAFEEQAGRVQKERT
                     QLQTGQPSQSGLGAAVPTKEETILRSKEFKNPSETAHPYWPGPDDGSQSSTNDSLLPL
                     TPRQLTAFQDIFKLFSCSPTGTVDMHSMKVALRNVGIQLGPQEMCEALRLADLDGDGI
                     VSFKDFLGVLTDNHRLAQCMSQMKGSRFCEPPGLQTLFLEVLFKLLNQGFVPAKSRQE
                     VTSYYFQKQRDLRLSSCPRNRARGPSRPARAHTGLTFFCQAARLNGLSSSQLARSLHT
                     LCRAGGRSPYTQIPNLAGRPRPDRKTTTRTAGPEVRLPKPQQPGRPKLPLNLGPLSKG
                     PLRPPAGLMSQPLEQMRPSKLASSPPTLVQKHPSSPSSACFQRCTIKSLYK"
ORIGIN      
        1 ctgaggtaca gtaaaaagcc agggccagag gaggcctggg gaccatggag ggcagcagag
       61 gccagaagac caagagaccc ccaacgacac tgagaaggcc tccacagaag cctcggaata
      121 tcctcatgag agatgcattc gaggagcagg ctggtagggt gcaaaaggag cggacgcagc
      181 tgcagacagg tcagccgtcc cagtcaggac taggagcagc cgtgcccact aaagaggaga
      241 ccatactgag gtcaaaagag ttcaagaatc cttctgaaac tgcccatcca tattggccag
      301 ggccagatga cgggtctcaa agttcgacca atgatagctt gctacccctg acaccccggc
      361 agctgacagc cttccaggat atcttcaaac tgttcagttg cagcccgaca ggcactgtgg
      421 acatgcacag tatgaaagtt gcccttcgca atgtgggtat ccagctgggc ccacaggaga
      481 tgtgcgaggc tcttcgcctg gccgacttag atggtgatgg aatcgtaagc ttcaaggact
      541 tcctaggtgt cctcactgac aaccaccgtc tggctcagtg catgagccaa atgaagggca
      601 gtcggttctg tgagccccca ggcctgcaga ccctgttcct cgaggtgctg ttcaaactac
      661 tgaatcaagg ctttgtaccc gccaaatcaa ggcaggaggt gacaagctac tatttccaga
      721 agcagcggga cctgcggttg agctcctgcc cgcggaaccg ggcgcgcggc ccgagccggc
      781 ctgcgcgtgc gcacacgggc ctcaccttct tctgccaagc tgcgcgcctc aatggcctct
      841 ccagctctca gctggcgcgc tccttgcaca cactctgcag agcaggtggg cgtagcccct
      901 acactcagat tcccaacctc gccgggcgcc cgaggccaga tcgcaagacc acgactcgaa
      961 ctgcagggcc cgaggttcgt ctccccaaac cccaacagcc aggccgcccc aagctccctc
     1021 tcaaccttgg gccactcagc aaaggtcccc tccgccctcc cgctgggcta atgagccagc
     1081 cgctggagca aatgcgcccc tcgaagctgg cttcctctcc gccaactcta gtgcagaagc
     1141 acccctcctc cccttcgtca gcctgtttcc agagatgtac tattaagagc ttgtacaagt
     1201 aaaccgtttg ctgagcgaag ct
//
