LOCUS       XM_003749810            4692 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EF-hand calcium binding domain 12
            (Efcab12), transcript variant X1, mRNA.
ACCESSION   XM_003749810
VERSION     XM_003749810.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003749810.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003749810.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4692
                     /gene="Efcab12"
                     /note="EF-hand calcium binding domain 12; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:680899"
                     /db_xref="RGD:1586985"
     CDS             2433..4460
                     /gene="Efcab12"
                     /codon_start=1
                     /product="EF-hand calcium-binding domain-containing
                     protein 12 isoform X1"
                     /protein_id="XP_003749858.1"
                     /db_xref="GeneID:680899"
                     /db_xref="RGD:1586985"
                     /translation="MSPILKKRPREETVSCLSPNKFLAKSCNLRGGGHKQTRRPGDQK
                     THALGKAPPHPSDAPKWNAGTPGHPSSAPSQNSAETLAKYSWKQKKASRLWEFQKAEE
                     KKKSRVTFSLSVTDLGAHQSFTSIDDDFDDAASKAPVFKPELVTAHCFRRLKQKDFRL
                     PQSRRRIIIVSGTKDQVPAQPTTPPQAPLPLTPSFKVPDTGDTQELPVNMKLWLSQRA
                     KLRKQLETFGDVKTWLDNKPTITSSEFKVLCMIRREQTAPKRTLISVGKPKGKPLKYI
                     RQPIPQLRLPKPPVLSDMYAFLRSRKIKIQEVFSKADRGENHRISREEFLMAVKAIGV
                     PLKTQELEDIIIYLGSLGKQNAITTEALASTYKQWSLVHQQSTIPTAREYHNLSTRRT
                     ALKYPPNRQQAISSLQPPNMDLLKVPEVDTKMEGRPMSDEDMEDVGRRYRERRRQYKL
                     SLPSIQYLENCRLVRSGTKQFDDHCLPTTISGEIEELLNMTRRDNFLVYLQCWELCEA
                     YGLPLTEDILMRALLYPGDRIISLKEEVRPIRQPGGYYIDDRIVHSLAGFKNLHKHGE
                     KETDKKTSKKMKEMHFLDFEEFTGKLKSKRLRGPSRTHPNHFWPGHLLDKLRLYLPTV
                     ARDRSLAIFSCIEHKPPAYSAVYNSKDWWPMKDLNYMTYAYYDAKKVYFIN"
ORIGIN      
        1 ttgtgaaacc tcatctctcc cagttgaaga atggaatctt tttatgtttg gtgccacttc
       61 cacgacaggt agtatactat catggctcca gtcccaaggg tcaattgttc taaggattgg
      121 tttgaaaatt aaatcaaatg aaggcaaagt aagccaactg tcaggaagcg gtcgtaggat
      181 agggcatagg tataggcaga tgtgctgtga tggcaggctc attgattttc cctctggtga
      241 acaagtggca gctaataaag agggatgctg gaactggaga ggtgactggt gacaatactc
      301 aggttcagtt cctagcatct ctgaagaatc acagctccag gggatctgtt gccctcctct
      361 gagcacacag gtagtgtgta cacatacttg tgaagtaata agtatacata agtgtaaaga
      421 gatgcagcga aaagtgatag gaaaactggc cacacctccc acttcacagc aacccatcat
      481 attttcacag acatcacagg aacacacgtg cagagcactg ctgaggaggc aaaaggatga
      541 gaaggctctg tggaaaccta gaaagagaac agtgcttaca gtacggcaga gaagagaaag
      601 aggatgggtg gatagtcaga cacaagcagc tcagagtcca gagaaatctt tggaactctg
      661 ggccacagcc aaggttaggt ggtaaagcaa atttcccaaa tgccagctat gaggtaagac
      721 tgcagggcag ggcactgaca aaccccctct ccctggtcac tttggaaggg agctctgcct
      781 agcccattgc tggggttcca gggtgcctct tcccttttag aaggtaaggt tgcctgacct
      841 ccatgccttc cctggcatct cagtgaaatc aagttgcctt gtcctggttc tgtaagtgtt
      901 caaaggctat ggctcagaag ggccagtgga agtgagggcc tcatttgtta tagggagtta
      961 ggaagatgct aaatctggtg aaggtggtcc ccagcacaga gaacttgttc aaaataatga
     1021 tgatctttat tttgcaacat aattttagaa tcagggtgta gttcaacgat tgcatttgcc
     1081 tggcttgcac aaggcttagg gctcagggcc caccagtaca aataaacaaa caaaaccttt
     1141 tttttttttt tttttttttt tgagacagga tctttctatg tagacttcca attcacagag
     1201 atttttctgt gtaccaccat acctggccag aataaatttt taactgttca attaaatggt
     1261 ttttgtgttt aacacattta tagccactga cactagctaa ctctaggaca tttccatcac
     1321 ccaaaaagga aaccccactc tagttaatag ttaatccttt ctcaccattc atctctggtc
     1381 accagcagct gactgttgca gagttaccta ttctgggcat tttgtataat agaaccttcc
     1441 gtgtgaggcc tgagtctgga ttcttccatt tactagactc catgtagtat gggtcatgtg
     1501 ccttccatgc acaccccatg tttacctatt aatgaacatt tcaaaggttt attattagaa
     1561 cttacttccg gcctctgttt ctggctttga tttttaaaga tagtctctca ttgtgtagct
     1621 ctggctggcc tgggacttat gtaacacaag ctggcctcaa acttaacgtc tatcttcttg
     1681 cccatctcag cgctgggata caagtggttg ccaccataac tgttgattcc aaaccataac
     1741 acccagacat aacaccaaat acctgtcttt tatttgacct tgactgacta ggattcttag
     1801 aactcagcgc agagtatgac actttttttt ttttttttga atgagaaaag tgaaacctaa
     1861 agatgagatc tgtgaagatc cttcagctta caagaaaatc gggaaaaaaa aaaaaaagtt
     1921 tttcttcaga atttggccac aggaagactg acataggcat gacttctcga agtaggcact
     1981 aaccagagct aaacaaatct ctgacgctcc tggcttccgg attttgggga ggaagaagga
     2041 agaagggttc ttccgcctcc ttcctgcaag tgggagcgct cagccaatcg gtgtagggca
     2101 acagaggctt actctctcag caggtggagt tgccttttgc aaaacctgaa gctgatttgc
     2161 acctaatggc taagcccagg gcatactcct aaacgccgtc tacaggaacc ctctggcttc
     2221 tggcggcata gccatcggag agtgtcagga taggctggaa gcctcattgt gccgtctaca
     2281 ttctgaggta ggggttgccc ggagttccag aaggtaacaa acttctggat tcctatgccc
     2341 ggacgaaata gaaccagact gagtcacctg ccttggaatc aaagcccggc tcttgtgcct
     2401 gggaacctgc atatttctca gttaggcaaa caatgagtcc tatattgaag aagagaccta
     2461 gagaagagac agtcagctgt ctgtccccaa acaagttctt ggcaaaaagc tgcaatttga
     2521 gaggtggagg gcacaaacag acaagaagac ctggagacca gaagacccat gctcttggaa
     2581 aggctcctcc ccacccatct gatgctccaa agtggaatgc tggtacccct ggccaccctt
     2641 cctcagcacc cagtcagaat tcggcagaaa ccctggccaa atatagttgg aagcaaaaga
     2701 aagcatccag gttatgggag tttcagaaag cagaggagaa aaaaaagagt cgtgtgacgt
     2761 tcagtttatc agtcacagac cttggggccc accagtcttt cacctccata gatgatgact
     2821 tcgatgatgc cgccagcaag gctcctgtct tcaaacctga gctagtcact gcccattgct
     2881 tcaggcgact gaagcagaaa gacttccgtc tgccgcagag ccgccggcgg atcatcattg
     2941 tgtctggcac aaaggaccag gtgccagccc agcccacaac gcctcctcaa gctccccttc
     3001 cactcacgcc cagcttcaaa gttcccgata ctggagacac ccaagagcta ccagtgaaca
     3061 tgaagctctg gctgagtcag agggcaaagc ttcggaagca gctggagaca tttggcgatg
     3121 tcaagacgtg gctggacaat aaacccacca tcacgtcctc agaattcaaa gttctgtgca
     3181 tgattcgccg ggagcaaaca gccccaaagc gtaccttgat ttcagtcggg aaacccaagg
     3241 gtaaacctct caaatatatc cgccagccta taccccagct tcgactgcct aagccccctg
     3301 tcctgtctga catgtatgcc ttcctgcgga gtcgaaagat caagatccag gaggtattta
     3361 gcaaggcgga tcggggtgag aaccaccgca tctccaggga ggaatttctc atggctgtga
     3421 aggcaattgg agttcctctg aagacccagg agctggagga catcatcatc taccttggct
     3481 ctcttgggaa gcagaatgcc atcaccacag aagccctggc cagtacctac aagcagtggt
     3541 cactggtcca tcagcaaagc accataccta ccgccaggga gtatcacaat ttgtctacaa
     3601 ggagaactgc cctgaaatat ccccctaaca ggcagcaggc tatctcatcc ctacagcctc
     3661 ccaacatgga cctgctaaag gtgcctgagg ttgatacaaa gatggagggg cggcccatgt
     3721 ctgacgagga catggaggat gtgggcagac ggtaccgaga gaggcggaga cagtacaagc
     3781 tctctctccc ctccatccaa tacctggaga actgccggct ggttcgatct ggaacaaaac
     3841 agtttgatga tcactgcctg ccaaccacta tttctgggga gattgaggaa ctgctcaata
     3901 tgacccgcag ggataacttc ctagtctacc tgcagtgctg ggaactctgt gaggcctacg
     3961 gtctcccgct gactgaagat atcctcatga gagcgctgct gtatccggga gacaggataa
     4021 tttctctgaa agaagaagtt cgcccaatcc ggcagcctgg agggtattac atagacgaca
     4081 ggattgtgca cagcctggct ggattcaaga acctccacaa gcatggggaa aaggagacag
     4141 acaagaaaac atcgaagaaa atgaaggaaa tgcactttct cgatttcgag gaatttaccg
     4201 ggaagcttaa gtcgaagagg ctaagaggtc cctcacgcac ccaccccaat cacttctggc
     4261 ctggtcacct tctggacaag ctgcggctct acctgcccac tgtggccagg gaccggagcc
     4321 tggcgatctt cagctgtata gaacacaagc cccctgctta ctctgccgtc tacaactcta
     4381 aggactggtg gcccatgaaa gaccttaatt acatgaccta tgcctattat gatgcaaaga
     4441 aggtatactt catcaactag aggcctgaag catgctgggt cagaagactg cagccaggag
     4501 cccacagctg cagtcctgag ataccaaccg gctatacaaa ggaaacattc ccagggaagg
     4561 tctggggata tgtcttctga cgccacggtg tccagtggag tgtggatgtg tccgcacgca
     4621 cacatgctgt gctttcttct ctgtcatgac ctctgtcctt ttgaaataaa ccaaattaga
     4681 gctgacctgt aa
//
