LOCUS       XM_039105864            1905 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus embryonic ectoderm development (Eed),
            transcript variant X2, mRNA.
ACCESSION   XM_039105864
VERSION     XM_039105864.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105864.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1905
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1905
                     /gene="Eed"
                     /note="embryonic ectoderm development; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 82 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:293104"
                     /db_xref="RGD:1309782"
     CDS             474..1640
                     /gene="Eed"
                     /codon_start=1
                     /product="polycomb protein EED isoform X2"
                     /protein_id="XP_038961792.1"
                     /db_xref="GeneID:293104"
                     /db_xref="RGD:1309782"
                     /translation="MSEREVSTAPAGTDMPAAKKQKLSSDENSNPDLSGDENDDAVSI
                     ESGTNTERPDTPTNTPNAPGRKSWGKGKWKSKKCKYSFKCVNSLKEDHNQPLFGVQFN
                     WHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSH
                     PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW
                     NIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE
                     SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKMLALGNQVGKLY
                     VWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR"
ORIGIN      
        1 gccacagact ttcgctcgtt tgcagcgggt cggagatcga aggtttgagc caattgcgga
       61 cgaaacgtct gggcaaggaa gggggtgagg gagcagccct ttgagttccg cctcctctct
      121 aggcgctggt ggggaagggg gactaggaaa ccctgccctc tgagccagca ggtccgacgc
      181 ctcggtgcaa agtgccgaga gggcggcggg aaaaccgccc gccgggacca ggggacggga
      241 agcagccagg aagccgtacg ggagggcgcg cgcgcgcgcg cccctttttc agcagtgtgg
      301 cggggtcgca cgcacgcccg cctcggcggc tgggcgcgat ttgcgacagt ggggggagcg
      361 gcggcggtgg cggtgccggc agctttgcgg caggctccgg ccgggcgtgc ttgacggcgg
      421 tgtggcggag gccccgcccg aggcggcaag aacctggagg gaggcggagg aatatgtctg
      481 agagggaagt gtcgactgcg ccggcgggaa cagacatgcc ggcggccaag aagcagaagt
      541 tgagcagcga cgagaacagc aacccggacc tctcgggaga cgagaatgac gatgctgtca
      601 gtatcgagag tggcacaaac acagaacgcc cggacacacc cacaaataca ccaaatgcac
      661 caggaaggaa aagctgggga aagggaaaat ggaagtcgaa gaaatgcaaa tattctttca
      721 aatgtgtgaa cagcctcaag gaagatcaca accagccatt gtttggagtt cagtttaact
      781 ggcacagtaa agaaggagat cctctggtgt ttgcaactgt gggaagcaac agagtaacct
      841 tatatgaatg ccattctcaa ggggaaatac ggttattgca gtcctatgta gatgctgatg
      901 cagatgaaaa cttttacact tgtgcatgga cctatgatag caacaccagc caccctctgc
      961 tagcagttgc tggatctaga ggcataataa gaataattaa tcctataaca atgcagtgta
     1021 taaagcacta tgttggccat gggaatgcta tcaatgagct gaaattccac ccacgagacc
     1081 caaaccttct cctgtcagta agtaaagatc atgctttacg attatggaat atccaaacag
     1141 acactcttgt ggcaatattc ggaggtgtgg aagggcacag agatgaagtg ctgagtgctg
     1201 attatgatct tttgggtgaa aaaataatgt cctgtggtat ggatcactct cttaaactgt
     1261 ggagaatcaa ctcaaagaga atgatgaatg cgattaagga atcttacgat tataacccaa
     1321 acaaaactaa caggccattt atttcccaga aaatccactt tcctgatttt tctaccagag
     1381 acatacatag gaattatgtt gattgtgtac gatggttagg cgatttgata ctttccaaga
     1441 tgcttgcatt gggcaatcag gttggcaaac tgtatgtttg ggatttagaa gtagaagatc
     1501 ctcataaagc caaatgcaca acactgaccc atcataaatg tggcgctgct attcgacaaa
     1561 ccagttttag cagggatagc agcatcctca tagctgtctg cgatgatgcc agcatttggc
     1621 gttgggatcg acttcgataa actatttttc cctagtaaaa attagaatat gttgtctgtg
     1681 taaaatagaa ttaatgtatc ttgctagcaa agggactaga gcatttagac ttgtctttca
     1741 gcatccgatc aggctgagct gaatgtagtg gtgtttacat tgtttacatt ctttgtactg
     1801 tcttcctgct cagactttac tgcttttaat aaaaatttat ttttgtaaag ctgtgttatt
     1861 tttattgtga tggaaacaaa ctggaagaaa taaagttata ccata
//
