LOCUS       XM_039080104            8465 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus early endosome antigen 1 (Eea1),
            transcript variant X1, mRNA.
ACCESSION   XM_039080104
VERSION     XM_039080104.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080104.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8465
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8465
                     /gene="Eea1"
                     /note="early endosome antigen 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 45 ESTs, 4 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 58 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:314764"
                     /db_xref="RGD:1310167"
     CDS             16..4692
                     /gene="Eea1"
                     /codon_start=1
                     /product="early endosome antigen 1 isoform X1"
                     /protein_id="XP_038936032.1"
                     /db_xref="GeneID:314764"
                     /db_xref="RGD:1310167"
                     /translation="MDRPRRRGCSDSAPRPRRAGPPSCQLRGRPGRRALAGYLLAGSC
                     SQPLAACGEVGAAKAASTAASSPPSSRLGCRPSRPPVVSNPHWVRRVPAAAAAAAAAA
                     GQTMFRRILQRTPGRVGSQGSDLDSSATPINTVDVNNESSSEGFICPLCMKRCVTAID
                     LSEHYQQVHTELETRGQELLSDSNVTGFICPQCMKSLGSADELFKHYQAVHDAGNDSG
                     HGGEASLALTRDDIALLRQEVQDLQASLKEEKWYSEELKKELEKYQGLQQQEAKSDGL
                     VTDSSAELQSLEQQLEEAQTENFNIKQMKDLFEQKAAQLATEIADIKSKYDEEKGLRA
                     AAEQKATHLTEELSKQTTVIQDLKTELLQRPGIEDVAVLKKELVQVQTLMDNMTLERE
                     RESEKLKDECKKLQSEHANSEATINQLRSELAKGPQEVAVYVQEIQKLKGSVNELTQK
                     SQTLMEKLQKKDLDYTHLEEKHNEEALSRKNTQAALHQRDLDCQQLQARLTASEGSLQ
                     RIQGELREKGEAAQKLKEELREVETKHQHLKVEFKQLQQQREEKEQHGLQLQGEVSQL
                     HSKLLETERQLGEAHGRLKEQRQLSSEKLMDKEQQVADLQLKLSRLEEQLKEKVTNST
                     ELQHQLEKSKQQHQEQQALQQSTTAKLREAQNDLEQVLRQIGDKDQKIQNLEALLQKS
                     KENISLLEKEREDLYAKIQAGEGETAVLNQLQEKNHALQQQLTQLMEKLKNQSESHKQ
                     AEENLHDQVQEQKAHLRAAQDRVLSLETSVSELSSQLNESKEKVSQLDIQIKAKTELL
                     LSAEAAKTAQRADLQNHLDTAQNALQDKQQELNKVSAQLDQVTAKFQEKQEHCTQLES
                     HLKDYKEKHLSLEQKAEDLEGQIKKLEANNLEVKASREQAVQSLQQQRQLSTDLELRN
                     AELRKQLQEQKEVVSHTKLDLQNKSEALENIKQTLTKKEEEKVVLKQEFEKLSQDSEA
                     QHKELSDRMQAAITELMVMTAQKDALLAELSTTKGKLSKVSDSLQTSRSEFEKESQKG
                     KAAVLDLEKACKELKHQLQQQTESALKEQSELKKSLEKERETSQQLMIELNSVKGEVT
                     QAQNTLKQKEKEEQQLQGNINQLKQATEQKKKQMEALQGELKNVTSQKAQLESKLQQQ
                     AAQAAQELAVEKGKLSALQSTYDKCQADLQQLQSDLYGKESELLATRQDLKCVEEKLA
                     LAQEDLISNRNQIGNQNKSIQELQAAKAALEQDLAKKEEVLKEQSKALQDAQREKSVK
                     EKELVTEKSKLAEMEEIKCRQEKEIAKLKEELKSHKQESIKEVTNLKDAKQLLIQQKL
                     ELQGKVDSLKAALEQEKERQQLMREQMRKEEEKRKEEFSEKEAKLHSEIKEKEAGVKK
                     HEENEAKLTMQVTTLNENLGTVKKEWQSSQRRVSELEKQTDDLRGEIAVLEATVQNNQ
                     DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNR
                     KWAEDNEVQNCMSCGKCFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDAC
                     FNDLQG"
ORIGIN      
        1 cccgccctcc tgcggatgga caggccgagg aggcggggct gcagcgactc cgcccctcgg
       61 ccacggcggg cgggcccgcc cagctgtcag ttacgggggc ggcccggcag gcgggcgctc
      121 gctggctacc tcctcgctgg ctcgtgctcg cagcctctcg ccgcctgtgg ggaagtcggg
      181 gccgccaaag ccgcgtccac cgccgcctct tccccgccct cctcccggct cggctgccgg
      241 ccctcgcgcc ctccagtcgt gagtaacccg cattgggtgc ggagagtccc cgcggcggcg
      301 gcggcggcgg cggcggcggc tggacaaacc atgtttcgga ggatcttgca gaggactcct
      361 gggagagttg gctctcaagg ttctgattta gattcatcag caactcctat aaatacggtg
      421 gatgtcaata atgaaagttc ttcagagggt ttcatctgcc cattgtgtat gaaaagatgt
      481 gtaactgcta ttgacttgtc ggaacattac cagcaagtac acactgaact cgagacgaga
      541 ggacaggaac ttcttagtga ctccaatgtg actggtttta tatgtcccca gtgtatgaaa
      601 tctcttggct cagctgatga acttttcaaa cactatcagg cagttcatga tgccggtaat
      661 gactcggggc atggtggaga ggccagtctt gctttgacac gagatgacat agcactactc
      721 aggcaagagg tccaagacct gcaggcctca cttaaggaag aaaaatggta ctcagaagaa
      781 ttaaagaaag aattagaaaa atatcaaggg ctacagcagc aagaggctaa atctgatgga
      841 ttggtgactg attcatcagc agagctacag tctttagagc aacaattaga agaagcccaa
      901 actgagaatt ttaatattaa gcaaatgaaa gatctgtttg aacagaaagc agctcaactt
      961 gctactgaaa ttgcagatat aaagtcaaaa tatgatgaag aaaagggtct ccgagcagct
     1021 gcggaacaaa aagcgacaca tttgacagaa gaattaagta aacagacgac tgtaattcaa
     1081 gacctgaaaa ctgagctgct tcagagacct ggtatagaag atgtcgctgt actaaagaaa
     1141 gaactggtcc aagttcaaac tctaatggat aacatgactt tggagcgtga gagagaatct
     1201 gaaaaactca aggatgaatg taaaaagtta cagtcagaac acgctaactc ggaggctacc
     1261 ataaaccagc taaggagtga acttgccaaa ggcccccaag aagttgcagt atatgtgcag
     1321 gaaatacaaa aacttaaagg ttcagttaat gaattaacac aaaaaagcca gaccttgatg
     1381 gagaaattgc agaagaaaga cctggattac acccacttag aggagaagca taacgaagag
     1441 gcactgagta gaaagaatac ccaggcagcc ctccaccaaa gggacctgga ttgccagcag
     1501 cttcaggcaa ggctaactgc atccgaaggc tcgctacaga ggatccaagg agagctcagg
     1561 gaaaagggag aggctgctca gaagctcaaa gaagaactgc gggaagtaga gaccaagcac
     1621 cagcatctta aagtggagtt caagcagctg cagcagcagc gggaagagaa ggagcagcat
     1681 gggctgcagc tgcaagggga agtcagtcag ttacatagca aacttctgga gactgagcgc
     1741 caactagggg aagctcacgg taggctgaag gagcagaggc aactttcaag tgagaagctg
     1801 atggataagg aacagcaagt ggctgactta cagctcaagc tctctcgtct ggaagagcag
     1861 ttgaaggaaa aggtaacaaa ttccactgaa ttgcaacatc aattagaaaa atcaaagcaa
     1921 cagcaccaag aacagcaagc ccttcagcaa agcactacag ccaaactccg agaagctcag
     1981 aatgatttag aacaagtgtt acgtcagatt ggagataagg accaaaagat ccagaacctt
     2041 gaagccttac tacagaagag taaagaaaat atttccttac tagaaaagga aagagaagac
     2101 ctttatgcaa aaatccaagc cggtgaagga gagactgctg tccttaacca gttgcaagag
     2161 aaaaaccatg cactacagca gcaactaact caactgatgg agaagctgaa gaatcagtcg
     2221 gaaagccata aacaagctga ggagaacttg catgaccagg tacaggagca gaaggcacat
     2281 cttcgagctg cacaagaccg tgttctttct ctagaaacca gtgtcagtga actaagcagt
     2341 cagttaaatg aaagcaagga gaaggtttcc cagcttgaca tacagattaa agccaaaact
     2401 gaattattgc tatcagcaga agcagcaaaa actgctcaaa gagctgatct tcaaaatcat
     2461 ttggacacag ctcaaaatgc actacaagat aaacaacagg agttaaataa ggtcagtgca
     2521 cagctggatc aggtcactgc aaagtttcag gagaagcagg agcattgcac tcagctggaa
     2581 agccatctca aggattacaa ggagaagcac ctctctctag aacaaaaagc ggaagactta
     2641 gaaggccaga ttaagaaact agaagccaat aatcttgaag ttaaagcaag cagggagcaa
     2701 gctgtgcaga gcctacagca gcagaggcag ctgagcacag acctagagct caggaatgca
     2761 gagctcagga agcagcttca agagcagaag gaagtagtat ctcatacaaa attggatcta
     2821 cagaataaat ctgaagccct tgaaaatatt aaacaaaccc tcactaagaa agaagaagaa
     2881 aaagttgtct tgaaacagga atttgaaaag ttaagtcaag attcagaggc gcagcacaag
     2941 gagctgagtg acaggatgca agctgcgatc acagagctga tggtgatgac agcacagaag
     3001 gacgctctcc tggctgagct ctccacaaca aaagggaaac tgtcaaaagt ttcagattct
     3061 ttacaaacct ccaggagcga atttgagaaa gagagtcaga aaggaaaggc tgctgtacta
     3121 gacttggaaa aagcttgtaa agaattaaag catcagcttc aacaacaaac agaaagtgca
     3181 ctgaaggagc agagtgaact gaaaaagtca ctggagaagg agagagagac ttctcaacag
     3241 ttgatgatag aactcaattc agtcaaggga gaagtcacac aggctcaaaa tacattaaag
     3301 cagaaggaga aagaagagca gcagcttcag gggaacataa atcagctgaa gcaagcaact
     3361 gagcaaaaga aaaagcaaat ggaagctctt caaggagagc ttaaaaacgt tacttcacaa
     3421 aaggcccagc tggagagtaa actgcagcag caggcggcac aggcagccca ggaacttgct
     3481 gtggagaaag gaaagctgtc agcactgcag agcacctatg acaagtgcca ggccgacctg
     3541 caacagctgc agtctgacct ctatggcaaa gagtctgaac ttctagccac aaggcaagac
     3601 cttaagtgtg tagaagagaa gcttgctctg gcacaagaag acctgatttc aaacagaaat
     3661 caaattggaa accaaaataa atcaattcaa gaactgcagg ctgccaaagc tgctttggag
     3721 caggacttag caaagaagga ggaggtgctc aaggagcaga gtaaagcact gcaggatgcg
     3781 cagagagaaa agtcagtgaa ggaaaaagaa ctagtaactg aaaagtctaa attggcagag
     3841 atggaggaaa ttaaatgtag acaagaaaaa gaaatcgcta aactcaaaga agaactcaag
     3901 tcccacaaac aagaaagcat aaaggaagta acaaatctca aggatgccaa acaacttttg
     3961 attcaacaga aattagaact ccaaggcaaa gtggactcac tgaaggcagc tcttgagcag
     4021 gagaaggagc gtcagcagct aatgcgggag cagatgagga aggaagaaga gaagcggaag
     4081 gaagaatttt ctgagaagga agcaaaactg cattctgaaa taaaagaaaa ggaagcagga
     4141 gtgaagaaac atgaagaaaa tgaggctaag cttaccatgc aggtcacaac attaaatgaa
     4201 aacttgggca ctgtgaagaa ggagtggcag tctagtcaac ggagagttag tgagcttgag
     4261 aagcagacgg atgacttacg gggtgaaatc gctgtcttag aagcaactgt tcagaataat
     4321 caggatgaaa gaagagcact gctagagaga tgtcttaaag gagaaggtga aatagaaaag
     4381 cttcagacca aagtcctaga gttgcaaaga aagctggata acacaactgc agctgtgcag
     4441 gagctgggca gagaaaacca gtccctacag atcaaacaca cacaagccct gaacagaaag
     4501 tgggcagaag acaacgaggt acagaactgc atgtcctgtg ggaagtgctt ctcagtcacc
     4561 gtgcggcggc accactgccg acagtgtgga aatatcttct gtgctgagtg ttcagccaaa
     4621 aacgccttaa ctccttcttc gaagaagcct gttcgtgtct gtgatgcatg tttcaatgat
     4681 ttgcaaggat aacgggttat cacaagtgca gagtagtatc acactaacat tagactttta
     4741 ataaattgat ttggactctg gttgcatact aggccaaatt gaaattcgta tattttggaa
     4801 tgataccagt atcaagtaaa actcttctat ttttgtgaga cttgggttca tctttaatta
     4861 cttttttcca ttaagcccct aaaccagctt tcatgccaag gtcagaatta gccaatgaaa
     4921 tgtaaataat ctttggacag aaaatagcaa tgtatttttt taaatataat ttaattattc
     4981 acaaatgatg agtacacttc cttagctgct ttctcttgga gtatgtgtag agtatctgga
     5041 tggcttgtgt cacttgtggc tttgttgcac agtaacagtt ctctcggtgg agtcatgcac
     5101 aggaatgtaa catttactgt ctttctcatg tataggtctg tagctcaatt atgttgttat
     5161 acttattact tgagtgttgt aaatgcagtt tatgctaaat gatgtgttaa ccataaattt
     5221 gagtgtgttt ttgtttgggc agtattgatt aaattctcaa gtagatttga cgaactccta
     5281 tataaaatgt atggtacttc tgggattgta tttatgaaac tagagttaat ttccatttct
     5341 ctatcttatt tcagacatcc acacagtccc ttaaaatatt atatgaaact ctcccccgcc
     5401 ccctaaactg gagggtgagt agtagagccc tggggtggcc tggtctcgtt tgtttgctgg
     5461 tagaaagttt tctgatctca cagcacagcc tcactccctc ctcttggcat ctttaggagt
     5521 ttgctttcta atcttcctaa gcgtagctca acctcactgt aattgtgcgt gcagtttagc
     5581 ctttcagaga taggaactgc tactgctact gttgtatctg aagacaaaca ggaaggaaat
     5641 agtaaaattc ttctttatag ttcttaaccc aataggaaag aatacatgga cacttagaaa
     5701 gctgccttca tgtctctggt gaggggtcca tattgactgg ggatctttta actttgtaaa
     5761 agtagtgctg tgagattaca caacagctac agaacaggtc catatagccc tcccctccat
     5821 atacctagga gcgcctaaat tatgataaaa atggaaacac agttgctaga ccctttaaag
     5881 gtcatttgtc tgccaaccga taagcttatt gttgggaagc atccgaagac tgagcttaat
     5941 acatactagg ttttaaatta tctttctgaa gaagaaatat aaagttatac attgaatcat
     6001 tgcagtcact taatagtaat agcagagaaa gataagagct aatgcttcat ttgcaagaaa
     6061 gaatttataa tacacactgc tgtcaggaat atgctggaat cttcgtgttt atgacataaa
     6121 acatacacaa actagagact gacatataat ttttaatcat taagcaaagc taaaccctgc
     6181 ttttggtaat tactaaggat gctgattata tcccaggacc tggataagta catatccttg
     6241 ggctctatat taaaaataat aggggctggg gatttagctc agtggtagag cgcttaccta
     6301 ggaagcgcaa ggccctgggt tcggtcccca gctccgaaaa aaagaaccaa aaaaaaaaaa
     6361 aaaataatag ttgggcaata gactgagctc ctcatgcaat ttacataatt gtgaaccctt
     6421 tcaggtagtc ctaattctac atctttggtt tttgcatata aatacctaga agtatgtgag
     6481 aaaaatgcac atattcacag cactactttg tgaaaattct ggattaaaat atttgttcat
     6541 ttcatcagtt aattgaagac actgaagact ttttttttag ggatggcaaa aagaaaacca
     6601 tatgtgttta tagtaatttt cttgttcccc cccaattaac cttatgtcgt aggtccccaa
     6661 atagtgtctc tacttaatgt ctctactaca ctctactgta ctgatgacac aaagaagcca
     6721 aaaaccattt gttcctctta actattacca gttcagtatg gactacaaac aaaaccttaa
     6781 gatttttttt ctcgtttaat taagaagtct tgtgagttct ttctggctgt acagttagat
     6841 gtttgctagt agagttgtat cgtcaggggg tcggagctgc catgcacaga gtctgattct
     6901 tggctatcat gtgaaattgg tatcagatac tggcaaactg caaaccccag cacagaaagg
     6961 ggagttaaaa tcaggttgtg ctgggtttgt gtacaataaa ctgtatgtac agaatatttg
     7021 taatagatag caggtaaagc tgcgatatag gacttacttg ctttgaagaa agagaagaaa
     7081 gaaacacaaa aacctcagtg cagtatacaa ataaacattt tgttcaacta cctcttaaag
     7141 tggaattagc tagtttaata gtttccttat tgtaatatta aatagcaact gccaaattta
     7201 tgttcccatg actcttgaaa ggtcttcatg attattttat atagtttcga ggtctttatg
     7261 gctacttttt tactcttgca tttgcataag atgtttagcc tttaagtaga aggcaaatga
     7321 cagccgtata ttttgatatt tgtgacctgt ttaactatag cagttttttt taatgcactt
     7381 tggctattaa aaccatggat aacttgatct ataagattta aatgtgccat caatttagta
     7441 ctcctaagac ataagcttga tgaatgatct tctagaatta taatgtgcca cattttttgt
     7501 gtcttaattg ccctttgcct gaatttcaat gatcaaattg ttattgttgc acatgtgaat
     7561 actgtgtata aacttcctga attcatgtaa agttgtatga tatagaataa aagcccactg
     7621 tgttctttct gtaagtagtg atgaactaac tgtaacatgg tccagccacc gacaagtcta
     7681 acattttatg cttctctgaa ttggatcctg tatccatagc ctctgtacat agtttcgcat
     7741 gagtattttc tcctttagtt ttgggttcat tatttatatt gtgtttacta tttgtgatca
     7801 tgtagttgtg ccttattttg tgaaagttta gctcagtaaa tactgtaatt tctaatccaa
     7861 gtgattagaa agttaccaat tataaataaa tataactgat aaattataag acagcattta
     7921 aatctgtata aagagcaatg gaaggatcct tattgaattg ccacttctgt ttttttttaa
     7981 tatgttaaag atgatattaa agatcatttc tttgtagtag atgttatcca gtgactgtga
     8041 ttgttttgcc tgctttaaag agaacatgct attagttgtt ctttaaaaat tcaccaaatg
     8101 ctaggacttt gccctgggat acggcagtgg ccatgttata atttatatac cttaagatag
     8161 taattaaact cctgatccca aaggaattca ttaatgccat tttggttgag atgttctctt
     8221 ttcatccttc acactaagtt tgtagaaaat gaacaaaact aaaaagaaat attaaaaaat
     8281 ataatcaatc cgttctttca ttgtgtatat acatttaata cccatttggc catttaaaga
     8341 tacttttgtg aagatctaat acccaaatgt ttttttgtta cctttttcct acatcctact
     8401 gttccaaaat gaattgttca tttccatatt taactcaagt gttcattaaa ctctgaggaa
     8461 tttaa
//
