LOCUS       XM_039098903            3688 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ectodysplasin-A receptor (Edar),
            transcript variant X3, mRNA.
ACCESSION   XM_039098903
VERSION     XM_039098903.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098903.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3688
                     /gene="Edar"
                     /gene_synonym="RGD1561714"
                     /note="ectodysplasin-A receptor; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 5 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 12 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:365581"
                     /db_xref="RGD:1561714"
     CDS             277..1626
                     /gene="Edar"
                     /gene_synonym="RGD1561714"
                     /codon_start=1
                     /product="tumor necrosis factor receptor superfamily
                     member EDAR isoform X3"
                     /protein_id="XP_038954831.1"
                     /db_xref="GeneID:365581"
                     /db_xref="RGD:1561714"
                     /translation="MAHVGDCKWMSWLPVLVVSLMCSAKAEDSNCGENEYHNQTTGLC
                     QQCPPCRPGEEPYMSCGYGTKDEDYGCVPCPAEKFSKGGYQICRRHKDCEGFFRATVL
                     TPGDMENDAECGPCLPGYYMLENRPRNIYGMVCYSCLLAPPNTKECVGATSGVSAHSS
                     STSGGSTLSPFQHAHKELSSQGHLATALIIAMSTIFIMAIAIVLIIMFYIMKTKPSAP
                     AACCSSPPGKSAEAPANTHEEKKEAPDSVVTFPENGEFQKLTATPTKTPKSENDASSE
                     NEQLLSRSVDSDEEPAPDKQGSPELCLLSLVHLAREKSVASNKSAGIQSRRKKILDVY
                     ANVCGVVEGLSPTELPFDCLEKTSRMLSSTYNSEKAVVKTWRHLAESFGLKRDEIGGM
                     TDGMQLFDRISTAGYSIPELLTKLVQIERLDAVESLCADILEWAGVVPPASPPPAAS"
ORIGIN      
        1 gtccaggcta gaagcaatca agagagagag agttcccagg gagcccttca aaatagaaag
       61 tggagctggc ggcagaggtg tgcctggccg ctgtcacccg gctggcctca ggattgttga
      121 gaactgcttt tgagagaacg tcgacggctg cctgtgaagc ctgcccccca tctcttacct
      181 gctcgtcttc tccgtcttct ccgtcttctc cgtagatcca tcctctgctg gaaaaagctg
      241 acctcactcg ggtaccaggt gtacttccaa gagaacatgg cccacgtcgg ggactgcaag
      301 tggatgtcct ggctcccagt gctggtggtg tctctgatgt gctcagccaa ggcagaggac
      361 tccaactgtg gcgagaatga ataccacaac caaactaccg ggctgtgcca gcagtgtcct
      421 ccatgcagac caggggagga gccctacatg tcctgtggtt acggcaccaa agatgaggac
      481 tatggctgcg tgccctgccc tgcagagaag ttctccaaag gaggttatca gatatgcagg
      541 cgccacaagg actgtgaggg cttcttccgg gccaccgtac tgacaccagg agacatggaa
      601 aatgatgctg agtgtggccc gtgtctgcct ggctactaca tgctggaaaa cagacccagg
      661 aacatctacg gcatggtctg ctactcctgc ctcttggcac ctcccaacac caaggaatgt
      721 gtgggagcca cttccggggt ttcagctcac tcctccagca cttcaggcgg cagcaccttg
      781 tcccccttcc agcatgctca caaagagctc tcaagtcaag gacacctggc caccgccctg
      841 attattgcca tgtctacaat cttcatcatg gccatagcca ttgtcctcat catcatgttc
      901 tatatcatga agactaagcc ttcagctcca gcagcctgct gtagcagtcc cccaggaaaa
      961 agtgcagaag ccccagctaa cacacatgag gagaaaaaag aggccccaga cagtgtggtg
     1021 actttccctg agaatggtga attccagaag ttgacagcaa cacccacaaa gaccccaaaa
     1081 agtgagaacg atgcctcctc tgagaatgag cagctgctga gtcgcagtgt ggacagtgat
     1141 gaagagccag ccccggacaa gcaggggtcc ccagagctat gcctgctgtc gctagttcat
     1201 ctggccaggg agaagtctgt agccagtaac aagtctgctg ggatccaaag ccgaaggaaa
     1261 aagatattgg atgtgtatgc gaacgtgtgt ggtgttgttg aaggtctcag ccccacggag
     1321 ctgccttttg attgccttga aaagacaagc agaatgctca gttctaccta caactctgag
     1381 aaagcagtcg tgaaaacgtg gcgccacctt gctgagagct ttggactgaa gagggatgag
     1441 attgggggca tgactgatgg catgcagctc tttgaccgca tcagcactgc gggctacagc
     1501 atcccagagc tgctcacgaa gctggtacag atcgagaggc tggatgctgt ggagtccttg
     1561 tgtgcagaca tattggagtg ggctggggtt gtaccccctg cctccccacc cccagctgca
     1621 tcctgaagag tttgccttgg actatcttcc ctgggaccag atggggaccc aatgaagcca
     1681 tggcagctgt gagtgatgcc atcggactgc cagagttcaa ggcatttcct ggtgggtcac
     1741 tgtactcctt aggctgccct aaggagctca ctgagcaccc aaatgaacca aaccatgtgt
     1801 gaggtcacag gtgaagaatc tgattctgtc ttttaaggaa gcacttagtg agagccaggg
     1861 gacatggcat agaccatgtt accaaacatc actaggcaaa taaggggatg ctaaaaagta
     1921 atgtagcaaa agttataaga agggtgatgg agtctcaagt tgaaaatggg agcatcctaa
     1981 tgaagaaact agtgtgaagg ttttagtaaa atggttacaa agtacagaca tcccacttct
     2041 gcattgcttc agaccgaaca gggtttgttg gcttgttcta tggtttcagg ggtaacgacc
     2101 tatgtttaca gtcacccgca atggtacaag ccttgcagtc agtagtgaaa gaactcactg
     2161 tatggacagt caaggcatat ctgtccagac aaaagtgaga gcagatttgg ccattcacag
     2221 gcacagtagt tataatgtgt gaggctgttt ttacttcaaa cagatgtgtg ttctaagtag
     2281 acagtgaaat ggtgacttgc taagagtttg gtcatgcctg gtttgtgggt ggggcttgtg
     2341 cgagttcaga cacagcatcc tcagccagtg agagataatg cagcctgagg tgcagtacag
     2401 agctgggacc tggaatcctg gaccctggtg gaatcatcca aagcatctgt ctcctgcccc
     2461 agacttagct tctcttctgc aaatgagagg ttggtcttca tgtctgtagt caggcaagtt
     2521 gaagctctgg tgagcatagg atgagcaaaa gaaaggagag gccaagggag ctccatgggg
     2581 gtaattacag tgtgggtgac cacacaaaat gggaatcgag ggaaattcac agccgccatg
     2641 ctcatgtaag ggcaactgta ggacagaaca tttacagagc taataaacag gcactgtaca
     2701 ggcagattct cttactacac ctgtaactgc caggaaatgg gaagtcaagg aaactttcca
     2761 ggcagggggt taatgccaag ctgggaagtt aatgctgctg ggctccctcc tggagtgccg
     2821 actgtagaga ctgtttcctt tggataaagc ctctggttta gaaggctgtt gggtttgttt
     2881 tcgtttcgtt ttgttttgtt tttacaaatc atatgactga acaaaggctt tggaggggaa
     2941 tcagttgtat gtttaaaacc atcaagcaat ttcccaccac agaatataga ccatactgtg
     3001 agaggaccat aattaggtcc tgaatattta atatgatcat tttactgtgt ctgtctgtgc
     3061 tggtttttta gaaggcattt tctatatcct gcaagttaaa tagtctgctt aattgtcctt
     3121 ttaattcctc tttgagatcc tgcagtgtcc cttacctctg atcttctata atgacactga
     3181 gcttcccctt aattagactt gtaaatgtca tctgtgatga gtgtgcaggt ctaagacagc
     3241 agtctcttct ccaactgtca ttctgctgaa gaatgggcag ctgcagccag cagtgtgggc
     3301 tagcctccat tcgccctatt aggtttcaag gttggaggca gccagcatcc ttgttgtttc
     3361 attgactccc atcttgctgc tttaggggag ctagtccctc gtcatgtact ttatttggca
     3421 ataaatccag gaagggtttg cttcagtgag ctttgcccat gctgtagaat tccgaaccaa
     3481 caagaccaca gtgactctta ctggaactcc atgctgccat ttttttgtct gaaaactgtc
     3541 agtacttaaa agtatttagg aaacactcga gctagatctg aggaccttag ctagtgaagt
     3601 cttaattgtg gatattttat ataattctgt ttatgtaact tattatattt ctacaagtcc
     3661 aataaactaa ataaaaagga gacctaca
//
