LOCUS       XM_039093185            8640 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus epithelial cell transforming 2 like
            (Ect2l), mRNA.
ACCESSION   XM_039093185
VERSION     XM_039093185.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 2% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2277              JACYVU010000008.1  10924409-10926685   c
            2278-2448           JACYVU010000008.1  10913661-10913831   c
            2449-2561           JACYVU010000008.1  10912451-10912563   c
            2562-2724           JACYVU010000008.1  10888541-10888703   c
            2725-2977           JACYVU010000008.1  10886817-10887069   c
            2978-3146           JACYVU010000008.1  10885498-10885666   c
            3147-3356           JACYVU010000008.1  10883481-10883690   c
            3357-3526           JACYVU010000008.1  10882458-10882627   c
            3527-3658           JACYVU010000008.1  10880252-10880383   c
            3659-3752           JACYVU010000008.1  10878227-10878320   c
            3753-3757           JACYVU010000008.1  10878047-10878051   c
            3758-3940           JACYVU010000008.1  10876224-10876406   c
            3941-4047           JACYVU010000008.1  10874507-10874613   c
            4048-4161           JACYVU010000008.1  10871737-10871850   c
            4162-4162           "N"                1-1
            4163-4173           JACYVU010000008.1  10871726-10871736   c
            4174-4260           JACYVU010000008.1  10865767-10865853   c
            4261-4475           JACYVU010000008.1  10863682-10863896   c
            4476-4515           JACYVU010000008.1  10862686-10862725   c
            4516-4623           JACYVU010000008.1  10862577-10862684   c
            4624-4697           JACYVU010000008.1  10861285-10861358   c
            4698-4854           JACYVU010000008.1  10861032-10861188   c
            4855-4920           JACYVU010000008.1  10860124-10860189   c
            4921-5009           JACYVU010000008.1  10858245-10858333   c
            5010-5182           JACYVU010000008.1  10849519-10849691   c
            5183-8640           JACYVU010000008.1  10844852-10848309   c
FEATURES             Location/Qualifiers
     source          1..8640
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8640
                     /gene="Ect2l"
                     /note="epithelial cell transforming 2 like; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 93% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:103689991"
                     /db_xref="RGD:9246970"
     CDS             2347..5307
                     /gene="Ect2l"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; substituted 2 bases at 2
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:3886..3888,aa:OTHER)
                     /transl_except=(pos:4045..4047,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: epithelial
                     cell-transforming sequence 2 oncogene-like"
                     /protein_id="XP_038949113.1"
                     /db_xref="GeneID:103689991"
                     /db_xref="RGD:9246970"
                     /translation="MSLGNLSLKSLEVESFHTRFSAWTPFKNQSLNRQLFQERVTLIS
                     HWFDLWTNKQRQEFLFMILSRSSKSQLRFIQDWLSERKQVARVDFSTVLPRCISLYIF
                     SFLNPKDLCAAAQVSWPWKFLTEQDCLWMPKCTRFGWFLPYAPTRNEYGAWKQHYIAC
                     VSSLDWLTPREAAAVYGTLNEPKTEDEELQERQREKCLRKTIWEKIALRKKELFKARP
                     PWLTGTRCSRSLKCTSLPGGPQLWRDRTGFCEALERQFLRASLDALPQRSNISGSHSY
                     LSLLKKSHPELGRTDDSSSCESPLHVILISSRIPAYEVPLGEGATPLTVFQLHGQNLL
                     AATWCWIGVKAGVVAVLYEPRGVTFEGLLHLLGRAQQGRKAQGLGIFSSGNSREIDLL
                     QGYKICIKNLLWPEVRDFWEKKLGSCLTTEEEGGHVDLFVPLGASETGIEVLSLLSQL
                     TGTSFSAPAGVATGSYLTQHILSDWLGPHRDGTPLSNYFIESKLQAWSSFTEFLEDTL
                     KSVRKXLSRSSRTCRRASVARMIGSSCFDTLGMDSILNNQGVAQALADGLMSCQKKGL
                     XDKPLEFLSYFLLKKSSKKNEDFEGDYVLTERGLKETQDXLMKERSSIEDNSQDTKSS
                     PRQSNLNMEALTTLERRLQMDSVEKRTRVVKELVQSERRYVQTLGIVRDVYARPLRAA
                     LSSNRAILSAANIHIIFSDTLHILNLNREFLDNLRDRLQEWSPAHCVGEIFIKFGSQL
                     NVYTNFFNNYPVVLKTIEKCREMAPAFRAFLKRHDRTIVTKMLSLPELLLYPSRRFEE
                     YIHLLYALRLHTPAGHVDRGNLTTAIEQIKKYKDYIDQIKENFKMREQLSDIQTLIWG
                     CPTLSEANRYLIRIQDVVQLQCCEEKTEFYLRLYEQTQDLSLFLFSDVLLVTSRSTSH
                     TPFEKTCKTTYRFSASVALPRVLIEDIPDSRYIKNAFVLRGLKRDWICATESPDDKFL
                     WLSVLQHAIRSSMK"
ORIGIN      
        1 cgttaactac tgtttaatga aagtccttga cttggatccc cattcttccc attagcctcc
       61 cactgtgcat tttacccggg ttgagttcag tcagtggaac ctgtgaggaa ttagcagctg
      121 ggcgtggcag cataaggggt aacagaagcg aacagcataa caggagatgc ttagcgcgaa
      181 gcaggttcta gcaaagctct gcagatactt tcctcctttc tttccttgtt tcagtggtga
      241 ggatcacacc aggactcaac gagtgacgat tttatgtgta cacagtgtgt cttgatcaca
      301 gtaaccctcc agctccctcc tcccattcct cctgacctcc gtgccgcccc tccctccttc
      361 atgtcctatt ttatcttcat aattcactgg gtccacttag tgctgcctgg caggggagct
      421 atccacaggt agcctacaag tagtctcact cccgaggagg gtgactccca ctcccccaag
      481 aaccatcagc tgcgaatagc cacggtatgt aggactcact gctgaggaag tctgtaagct
      541 tttctccccc agtggactct agcactgtaa aaactagagg gcaggaatgg agtttccagg
      601 tcaattccaa tctgacttct ctgtgttcat cagtagggtc cttcctttta gctatggtgg
      661 acaactaaaa acaatgagaa taaccagttg tttggggtcc ccctgggtcc tttctgacca
      721 gtgactcata gggaggtatc ccatacacga cactgggatt tagctcagtg gtagagtgct
      781 tgcctagcaa gcgcaaggcc ctgggttcga tccccagctc cgaaaaaaca aaacaaaaca
      841 aaaaaaaacc cccatgtatt ctgggagaac attgtccgct cactaaagat acggctattc
      901 aaacagcttt taaaagtttt taaataagca tacaagcaaa ggccttttca tacattttgg
      961 gttttttttt tttttttttt gactcccctt acaccataac cctcattctg gcttaaccac
     1021 actctgacaa cgcccccata cacacttcca catcacgttt gctctgcgtt caacccctta
     1081 agacctccta gcccctatat ggctgtttct ggtttcctga cctcatataa aacacacatc
     1141 tagaagtttt gaagctaggg tccacacatg agagagtcgt gcccggggct tattgtactt
     1201 cagttccatc catttgccag gaaaatacca ggatttcctt ttcataacat ctgcacgaac
     1261 tgccagtgtg tgtgtgtgtg tgctaatttc acttcctagt tgatgtcagt agagtagtcc
     1321 tgtggtagtc tatggaaccc tttgggtata tgcccatggt gtttcttccc acccacagtg
     1381 ggcaaccatt tcccgtcccc cacacgctcc tcagtattga taggtctggt gacagccatt
     1441 ctgactgagg taagacagaa tctccatttt aattttcctt gatgccccgt gccactctta
     1501 caacgtagat gttgcaaaat cattgtattc tattgagtta cagatctcct aaagcctact
     1561 gtgagagcaa actattttaa ctcagttgtg tttcctttca gacttcatcc ttggattgtg
     1621 tttaccgtac tattcatggg atttttaact tttccatact caacagattt gtgaaatctc
     1681 tccacgttaa ctacaaaaga agtgggagga ggggggcttc acaaaaaacc tgttaaggca
     1741 ttttggccaa agcaattatt ctaactcctg tataactaat actgttttaa aaaaaaaaaa
     1801 actttaaaaa tttctgagga tgtgttaaag atgaacagga gaaagggtaa gaagtgttac
     1861 ctttcccatc tcaagactta aaaattgctg gcttatataa agctaagcaa aatttggcag
     1921 acagtagcct tgtgtttctc acctcttccc agagacttgc aagaccctgg agatccagca
     1981 gccaaaagca atccacgtag aaaaacctag gaaaggtgac aacggctcta gttagcagcc
     2041 tcctgcagca aagaccgagg ttggccactg gagcgcagca ctgagccaag gacaccggac
     2101 ctgtggggcg tggtggcgga ttgtgttgtc ttccctatgg agatgggggc gccgctgccc
     2161 cacctacctc cccaggcagc aagccttcat tcctgccccg tgcagagagg agactgctgc
     2221 ccgaccaccg accaccggtc accggccacc gtgctcagac cttggcccct ccaggagtct
     2281 tcttagccac acatctgtta aattgaacca ataactccta gaaatagaag aaagtcattt
     2341 gccgagatgt cacttggaaa cctttccctg aaaagtttgg aagtggagag tttccacaca
     2401 cggttcagtg cctggacacc ttttaagaac cagtccttaa atagacagct ctttcaagaa
     2461 agagttactc tcataagtca ctggtttgac ctctggacca acaagcaacg gcaggaattc
     2521 ttattcatga tcctttcacg aagctcgaag tcacaattaa ggttcatcca agactggctt
     2581 tcggaaagga agcaggtggc cagagtggat ttctcgacag tgttaccgcg ctgcatttct
     2641 ctttacatct tttcctttct gaatccaaag gacttgtgtg cagctgctca agtcagctgg
     2701 ccctggaagt tcctaacgga gcaggattgc ttatggatgc ccaaatgcac taggttcggg
     2761 tggtttctgc cctatgcgcc aacacggaac gagtatggcg cttggaagca gcactacata
     2821 gcttgtgtgt ccagcttgga ctggctgaca cccagggaag ctgccgctgt ttacggaaca
     2881 ctgaatgaac ccaaaacaga ggatgaggag ctccaggaga ggcaaagaga aaagtgcctg
     2941 agaaaaacca tttgggagaa aatcgcactc cgcaagaagg agttgttcaa agctcgaccc
     3001 ccttggctga ctggaacacg ctgctccagg tcgctaaaat gtacaagcct gcccggcggc
     3061 cctcagctgt ggagagacag gacagggttc tgcgaagcct tggagagaca gtttcttcgg
     3121 gcatctttag atgctttgcc tcagcgaagc aacatctctg gcagtcactc ctacctttca
     3181 ttactaaaga aaagccaccc cgagctcggc agaaccgatg acagctcttc ctgtgagtcg
     3241 ccactacacg tcatcctaat atcatctcgg attcccgcat atgaggtacc actgggcgag
     3301 ggggccacgc cacttaccgt gtttcagcta cacgggcaga atcttttggc tgccacatgg
     3361 tgctggatag gcgtcaaggc aggagtggtg gcggtgctgt atgaaccccg aggagtgacg
     3421 ttcgagggcc tgcttcatct cctcggcaga gctcaacagg ggcggaaggc acagggcctc
     3481 gggatattta gcagcggaaa cagcagagaa attgacttac tgcaaggcta taaaatttgt
     3541 attaaaaatt tactgtggcc tgaagtgaga gacttctggg agaagaaact aggaagctgt
     3601 ttgaccactg aagaagaagg aggacacgta gacttatttg tgccacttgg agcatcagag
     3661 acaggtatag aagtgctttc tctgctatct caactaactg gcacatcgtt ctctgcccca
     3721 gctggagtcg caactggttc ctacctaaca caacatattc ttagtgactg gctggggccg
     3781 catcgggatg ggactcctct ttctaactac ttcatcgagt ccaagctgca ggcatggtcc
     3841 agcttcacag aattcctgga agacaccttg aagtcagtga ggaaatagct aagtcgctct
     3901 tccagaactt gcaggagagc atcggtggcg cgcatgatag gcagttcatg ttttgacact
     3961 ctgggtatgg acagcatcct aaataaccaa ggcgttgcac aggctctggc agatggactg
     4021 atgagctgtc aaaagaaggg tctgtaagac aaacctctgg aatttttgtc atattttctg
     4081 ctgaagaagt ctagtaaaaa gaatgaggat tttgaaggag attatgttct gacagaacgt
     4141 ggcctgaaag aaacacagga tncactcatg aaggaaagaa gcagtataga agacaattct
     4201 caggacacga agtcaagtcc aagacaaagc aacctgaaca tggaggctct gactacgctg
     4261 gagagaaggc tccagatgga ctcagtagag aaacgaaccc gagttgtgaa ggagctcgtg
     4321 cagagcgaga gacggtacgt gcagacgctg ggaatcgtga gggacgtgta cgccaggccc
     4381 ctgagggcag ctctctcctc caacagagcc attctcagtg ctgccaatat ccacatcatt
     4441 ttttctgaca ctctgcacat cttaaatctc aacagagagt ttctagataa cctaagggac
     4501 agactacagg aatggagccc agcccactgt gtgggagaaa tattcataaa gtttggaagc
     4561 cagttgaacg tatataccaa tttcttcaac aattacccag ttgtcctgaa aaccattgag
     4621 aagtgcagag aaatggctcc tgcgtttaga gcgttcttga agaggcacga tagaaccatt
     4681 gttaccaaaa tgctgagtct gccagagctg ctgctgtacc catcccggag atttgaagaa
     4741 tatattcacc ttctctatgc tctgaggctc catactcctg caggacatgt ggaccgtgga
     4801 aacctgacca ctgcaattga acaaatcaaa aaatataaag actacataga tcagataaag
     4861 gaaaacttca aaatgagaga gcagctgtcc gacatacaga cactcatctg gggctgcccg
     4921 actttatcag aagcaaacag atacctgatt cggatccaag atgtggttca gcttcagtgc
     4981 tgtgaggaga aaacggaatt ctacttaaga ctctatgaac agacccaaga cctcagcctc
     5041 ttcctcttca gtgatgtact ccttgtcacc agtcggagta catctcatac gccatttgaa
     5101 aagacttgta aaacaaccta ccggttcagt gcctcggtag cccttcccag ggtactcata
     5161 gaagacatcc cggactccag atatatcaag aatgcatttg ttcttcgggg tttaaaacgt
     5221 gactggatct gtgctactga gtcgccggat gataagttcc tctggctgtc agtactccaa
     5281 catgcaatca gaagcagtat gaagtaagac tagactcaaa aaggacaaga gggtcccgga
     5341 aagtcagata tgttttctgc tccagaacat ctagtgacaa gcacataggt atcagtcatg
     5401 gatgacgagg gcatgaagag ttaggacgac ggcctgtaag gtgtcctcca attttcataa
     5461 tgtatgattt agtcgatgca taaaatcaat atataaaaac aatgagtcta aacttttgaa
     5521 ccacatattc tggtaactac cgctcatggg cattatttaa gacaatttga cgtaacaaga
     5581 aaaaaaccct atgtgtaggt ttttaacaaa tgggaaatag ccagaataaa gtgttttttt
     5641 catgagcatt ctagaaaaat agttgaattt gcaattcact aatcagcatt ttcaggaaac
     5701 agttactgat tttaaggata tgtctgtaga atataaatgg cggctttctc aagcccttgt
     5761 caggtagatc cttaatgtgc atgcactcct ttcaaagcat tagagttcac catgtcagaa
     5821 tattaaaatg ttttctggat tttgttttct acaattctta agtacttttt gctttaagac
     5881 aaaattctta ggtcttccaa aataaccttt aaaaatttcc tttaacacca ctaaattaaa
     5941 aagtcagtga tggaagaatc gaacttttta acatcggaaa ttaatgaatg ggaattaact
     6001 cacggggttc agagcactgg gtgttcttaa ccaggggccc agagtcaatt ccaaaagccc
     6061 acacgatagg tcacaacctg tgactgcagc tccaggagac ccagtgctct cctcccgagt
     6121 gtagtgcaca gcacaggcaa gacacccata cacatacacg tgaaaatgag tgatctgtaa
     6181 aaatgaatgg caatgactgc actgcaggtc cggggccctg agggctgtca cagttccaca
     6241 caagcttcca gagggagctc cgatgtcacc acagtgagtg gcgtggcaca ataatcctga
     6301 gaatgaatgc agcagtgtac ccaggcagtg aacaacagct tcctaattgg acttaatacc
     6361 atctcaaaca cacacgcgtg cgcgcgcgcg cacacacaca cacacacaca cacacacaca
     6421 cacatacaca cacccaccca cccactcact ctcacacaga gcatgcctgg tcctggaaac
     6481 ccagccaact ccagagctga aatcttggac cttggagaag aatctacaat ttccccttta
     6541 ctaaagcagc acaatcccta actgtcatct aaatatttgt ccttatgctc acagataagt
     6601 gcggtcctta cttctcaaca aggaaccctt tctttgcaac agatggactc agtgctgaaa
     6661 gacacaacta atcaaaaagt ggagcccagt cccaatggat tcatctacaa gacgacccta
     6721 aacctaaagc taagggaaca ttttgggggc tggggtcgta atagccaaag gatccgggca
     6781 ttttctgaga gaatgtttct cttagtaagt ctcaccaaca tgactaccca tacatgagct
     6841 gaatggggca ctactataca actgccagtc aattctacac agagaactac agacaaccgg
     6901 ggggtgccga gagtggagaa gtcaaatcca gtgccgaatg ctcggccctg aaatcatgca
     6961 caggagtaac acctacagag tgagcaggct gtatttatgt gtttaggaat tgtactgcac
     7021 atacatatct gtacatgtat ataacaagaa ttaatgaaaa agagaccatg aatttgaaag
     7081 agagcaagga ggggtagatg gaagggtttg gaagaaagaa agagaagagg gaaatgatgt
     7141 aattatatca taatctcaaa aactaaaaga agtacctggc ctttaatccc agcaccccag
     7201 aggcagagcc aggaagactt ctgagtttga tgcagcctgg tttatataga agtccaggac
     7261 agcaatgaat acagagaccc tgtctcaaaa ataatcaagt aaataaaaga gaaaatctag
     7321 caaaaaatgt gccagtaaag aaatttagct aaataaatgt tttgcatagt taagtgtatt
     7381 aatgtaagtt ataatgtatt aattaggatt aggttattgg tccccttttt atttcataat
     7441 gtgttatggt tagtaaattc attggtacag tgcaggactg tgaactcaga acacttaatt
     7501 acatttgaat actgaagata tttctaattc ttaaaagttt aagtcctggc taaaatatat
     7561 agaaattaaa tatcgttttt ttaattaatg taaaaactat acttctgatt ttgttccaat
     7621 ggatctgtaa aagtttaata tttctaaaat aaccattaag agaatcatct gcttgttagt
     7681 tagcaatgaa tgcaaattaa taaacattac ctaaacgtat ctaccatatg ctatgaagca
     7741 aatctgaaga cagtgcagta tcctgacagg aggacgcacc cgagaggagt gcgacaccta
     7801 catgggagag agtagatggc gacacagtta atgaatggca gcagagaaat ctcaagtgac
     7861 cggtgttcat gtgacccgag accctcagaa atttaaaacc ctttacttgt aatcgctatc
     7921 tgtgacgcat cagcatttgc ttgcaccagt gtacatacag ctccagggac agtcctgggt
     7981 gtcattcctc aggcatcttc tacgtgattt tctttaaaat aaagactgag tggatctttc
     8041 gatggccaga gaaccagagg gacctgcccg tctggactcc cagtgcgggg attacaagca
     8101 cactaacagg cctggctttt aaaaccacaa acaaacaaac aaacaaacaa acaaacaggg
     8161 cctgtgaatt aaactcagat cttacgtgca gggcaagtat tcgccaacgg aagcccccaa
     8221 gcccaggaaa acagcgcctc agtcacacaa aggcagtgat gtctgcaagt ggctccttct
     8281 actccgtatg tagtggtttc atcctgttcc ttcgccttga gagagcagtg aaggaagacc
     8341 tatcttcata agtcataagc ttttaccgtt cctgctgaat tctcacgtaa acacacagaa
     8401 gaatcctgtc attggtgaaa ttggtcagaa aagcatagcc cccgaccctg agttgttgtg
     8461 agaacagttt ttagaacctc gtggttccgg agaatggcga ctgaggctct gaggaagaaa
     8521 ggaaaggaac ttctgagaaa atacatcagg ctcccaaagc aaacactgag tagggagctc
     8581 atcctaaaac actctataga ctagatgctg cacagagagg gacgctggca gtttgatatc
//
