LOCUS       XM_056985546            8782 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Ecm29 proteasome adaptor and scaffold
            (Ecpas), transcript variant X1, mRNA.
ACCESSION   XM_056985546
VERSION     XM_056985546.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985546.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8782
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8782
                     /gene="Ecpas"
                     /note="Ecm29 proteasome adaptor and scaffold; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 67 ESTs, 6 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 180 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:313196"
                     /db_xref="RGD:1306148"
     CDS             325..5862
                     /gene="Ecpas"
                     /codon_start=1
                     /product="proteasome adapter and scaffold protein ECM29
                     isoform X1"
                     /protein_id="XP_056841526.1"
                     /db_xref="GeneID:313196"
                     /db_xref="RGD:1306148"
                     /translation="MAAAAASASQDELNQLERVFLRLGHAETDEQLQNIISKFLPPVL
                     LKLSSTQEGVRKKVMELLVHLNKRIKSRPKIQLPVETLLVQYQDPAAVSFVTNFTIIY
                     VKMGYPRLPVEKQCELAPTLLTAMEGKPQPQQDSLMHLLIPTLFHMKYPAESSKSASP
                     FNLAEKPKTVQLLLDFMLDVLLMPYGYVLNESQSRQNSSSSQGSSSNSGGSSGIPQPP
                     PGMSFYAAKRVIGDNPWTPEQLEQCKLGIVKFIEAEQVPELEAVLHLVIASSDTRHSV
                     ATAADLELKSKQSLIDWNNPAIINKMYKVYLGDIPLKTKEGAVLKPELKRDPVSTRVK
                     LKIVPHLLRSRQAAETFPANIQVVYDGLFGTNTNSKLRTLSLQFVHHICITCPEIKIK
                     PLGPMLLNGLTKLINEYKEDPKLLSMAYSAVGKLSSRMPHLFTKDIALVQQLFEALCK
                     EEPETRLAIQEALSMMVGAYSTLEGAQRTLMEALVASYLIKPEVQVRQVAVKFASTVF
                     PSDHIPSRYLLLLAAGDPREEVHGEAQRVLRCLPGRNKKESASKQMPSFPEMVYYIQE
                     KASHRMKTPVKYMTGTTVLPFNPAAFGEIVLYLRMCLAHSAGVVPTSQSLADMQDHAP
                     AIGRYIRTLMSSSQATASSCNKSGETNPVQIYIGLLQQLLAGVGGLPVMYCLLEAVSV
                     YPEKLATKFVDKTEWIKSLMSSSKEEMRELAALFYSVVVSTVSGKELKSMVEQLIKAT
                     KDNHSPEVQHGSLLALGFTVGRYLAKKRVRMAEQHDLETDDDLLPEQEEVIRSATETI
                     GSFLDSTSPLLAIAACTALGEIGRNGPLPIPSEGSGFTKLHLVESLLNRIPSSKETNK
                     MKERAIQTLGYFPVGDGDFPHQKLLLQGLMDSVEAKQIELQFTIGEAITSAAIGTSSV
                     AARDAWLVTEEEYIPPAGAKVNDVVPWVLDVILNKHIISPNPHVRQAACIWLLSLVRK
                     LSTHVEVKSHLKEIQSAFVSVLSENDELSQDVASKGLGLVYDLGSEQDQQELVSTLVD
                     TLRTGKRVKHEVSGETVVFQGGGLGKTPDGQGLSTYKELCSLASDLSQPDLVYKFMNL
                     ANHHAMWNSRKGAAFGFNVIATRAGEQLAPFLPQLVPRLYRYQFDPNLGIRQAMTSIW
                     NALVTDKSMVDKYLKEILQDLIKNLTSNMWRVRESSCLALNDLLRGRPLDDVIDKLPE
                     MWETLFRVQDDIKESVRKAAELALKTLSKVCVKMCDPAKGAAGQRTIAVLLPCLLDKG
                     MMSPVTEVRALSINTLVKISKSAGAMLKPHAPKLIPALLESLSVLEPQVLNYLSLRAT
                     EQEKDAMDSARLSAAKSSPMMETINMCLQYLDVSVLGELVPRLCELIRSGVGLGTKGG
                     CASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRDSST
                     EKLLQKLTAWYMEKEEPIYKTSCALTIHAIGRYSPDVLKNHAKEVLPLAFLGMHEIAD
                     EEKSEKEECNMWTEVWQENVPGSFGGIRLYLQELITITQKALQSQSWKMKAQGAIAMA
                     SIAKQTSSLVPPYLGMILSALVQGLAGRTWAGKEELLKAIACVVTASSTELEKSVPNQ
                     PTTNEILQAVLKECCKENLKYKIVAISCAADVLKATKEDRFQEFSDIVMPLIKKNSLE
                     SMGVRTTKAEDENEKERELQLESLLGAFESLGKAWPRNPDTQRCYRQEMCKLMCERLR
                     LSTWKVQLGVLQSMNAFFQGLMLLEEEHADPEALAEILLETCQSITYSLENKTYSSVR
                     TEALSVIELLLKKLEEGKQWESLTAECRRLLIESLATMETDNRPELQEKASVLKKTLE
                     SLE"
ORIGIN      
        1 tataagagcc ggcaagaggc gagcaagccg ggcgccgtgc cgaagagccg ccgcgcggtc
       61 tcttggccgc acgggtggca gcggcggcgg cggctcctca gaggcgcgag gctgagggga
      121 gctcccgagt cgtgagctcg cgaggcgcgg cgagagcgac gctcgcaacg cggaggacgc
      181 aggcggcggg cgggcctcga gggcgcagcg cgtcccgcgt gagagactca aggcggcccc
      241 gggcccctgc gacaccgcac ggcgacggcc gcgagccccc ctcgccggcc gtccgcccct
      301 ccctcgctcg ctcccgggcg caacatggct gcggcggccg cctccgcctc ccaggacgag
      361 ctgaatcagc tcgaacgggt ctttttacga cttggccatg ctgaaacaga tgaacagtta
      421 caaaatatta tatctaaatt tcttcctcct gttttgctca aactgtccag cacccaagaa
      481 ggagtacgga aaaaagtaat ggaactgctg gttcatctga ataaacgcat aaaaagccgt
      541 cccaaaatac aacttccagt agaaacacta ttggttcagt accaggaccc tgctgcagtt
      601 tcctttgtca cgaattttac tataatttat gttaagatgg gctatcctcg cctgccagtg
      661 gaaaaacaat gtgagctggc ccctacactt cttactgcca tggaagggaa acctcagcca
      721 cagcaggaca gcttaatgca tcttttaata ccaactcttt ttcacatgaa atacccggct
      781 gaatcatcca aatcagcttc tccatttaat cttgctgaga aaccaaagac tgtgcagctg
      841 ctcttggact ttatgctgga cgtccttctg atgccttacg gatatgtgtt aaatgaatcc
      901 cagagtcgcc agaattcatc ttcatcacag ggttcttctt caaacagtgg gggaagttct
      961 ggaattccgc agcctccccc aggaatgagc ttttatgcag ctaaacgagt tattggtgac
     1021 aacccgtgga cacctgaaca gttggaacag tgcaaattgg gtatagtgaa atttatagaa
     1081 gctgaacagg tgcctgaact tgaagctgtt ctccacctgg tgattgcttc tagtgacaca
     1141 cgccatagtg tggcaaccgc ggcagacctg gaattgaaaa gcaagcagag cttaattgac
     1201 tggaataatc ctgccatcat taataagatg tacaaggtat accttgggga tataccactg
     1261 aaaacaaaag agggagcagt tctaaagcca gagctaaaaa gagacccagt cagtaccaga
     1321 gtgaagttaa agatcgttcc tcatctcctg cgttctagac aagctgctga aacgttccca
     1381 gctaacattc aggtggtata tgatggactt tttggcacaa atacaaactc aaagttaaga
     1441 acattgtccc tgcagtttgt acatcacatt tgcataactt gcccagaaat caagattaaa
     1501 ccacttggtc ctatgctttt gaatggtctc actaagctaa taaatgaata taaagaggac
     1561 cctaaactat tgtcaatggc gtattcagct gttggaaaac tctctagtcg aatgcctcat
     1621 ttattcacta aggatatagc tcttgtacaa cagctttttg aagccctgtg taaggaagaa
     1681 cctgagactc gactcgctat tcaggaagca ttgtctatga tggttggagc ttatagtacc
     1741 ttagaaggag cacagagaac tttaatggag gcacttgtag cttcatattt aataaagcct
     1801 gaagttcaag ttcggcaagt tgcagtgaaa tttgccagca cggtgtttcc ctcagatcat
     1861 ataccttcca gatacttgct cctactggct gccggagacc cgcgagaaga agttcatggt
     1921 gaagcacagc gtgtattacg gtgtcttcct ggtagaaaca aaaaggagag tgcttctaag
     1981 cagatgccgt cttttccaga aatggtgtat tacattcaag aaaaggcttc ccatcgaatg
     2041 aaaactccag tcaaatacat gaccggaaca actgtccttc catttaatcc agcagcattt
     2101 ggagagatag ttctgtacct gcgcatgtgc ctggctcata gtgcaggggt ggtgcccacc
     2161 tctcagagtt tggccgatat gcaagatcat gctccagcca ttggacgata catacggact
     2221 ctaatgtcaa gcagccaggc cacagcttca tcttgtaaca agagtggaga aaccaaccct
     2281 gttcagatct acattggcct gcttcaacaa ctgttagcag gtgttggagg tttaccagtc
     2341 atgtactgtc tattggaagc tgtgtcggtg tatccagaaa aattggctac caaatttgta
     2401 gacaaaacag aatggatcaa gagcttgatg agtagcagta aagaagaaat gcgtgaattg
     2461 gcggctttgt tctattctgt ggttgtgtca acagtgtctg gaaaggagtt aaagtcaatg
     2521 gtagaacaac tgataaaggc cacaaaagac aatcatagcc ctgaggtaca acatggatct
     2581 ttgcttgcct tgggattcac ggtgggaaga tacttggcta agaagagagt gagaatggca
     2641 gagcagcatg acctggagac agatgatgac ctcttgcctg aacaagagga ggtcattcgg
     2701 agtgctacag aaacaatagg ttcattttta gatagtacat cacctctgtt ggcaattgct
     2761 gcctgtacag ccctgggtga aattggcaga aatggtcctc tcccgatccc cagcgaagga
     2821 tctggattta ctaagctgca cctggtagaa agcttactca atagaattcc ttccagtaaa
     2881 gaaacaaata agatgaaaga acgagcaatc caaacattgg gctactttcc cgttggagac
     2941 ggggattttc cccaccagaa gctcctttta caaggtctga tggattctgt ggaggccaag
     3001 cagattgaac ttcagttcac tattggtgaa gccattacca gtgctgcaat aggaactagt
     3061 tctgtggctg cccgagatgc ctggctggtg actgaagaag aatatatacc tcctgctggt
     3121 gccaaagtga atgatgttgt cccatgggtt ttagatgtta ttttaaataa acatattatc
     3181 agccccaacc cacatgtgag gcaagcagcc tgcatctggc tcctttctct tgtgagaaag
     3241 ctaagtaccc acgtagaagt gaagtcccat cttaaagaaa tccagagtgc atttgtttct
     3301 gttctgtcag aaaatgatga actcagccaa gatgtcgcct caaaggggct cgggttggtt
     3361 tatgatctgg gcagtgagca agatcaacag gagttggtgt ctacacttgt agacacactt
     3421 aggactggca aaagagtgaa acatgaagtt tctggagaga cagtggtatt tcaagggggt
     3481 ggccttggca aaacacctga tggtcagggc ctctctacat acaaggagct ttgctctctg
     3541 gcaagtgatc tcagtcagcc agatctggtt tataagttta tgaatctggc aaatcatcat
     3601 gcaatgtgga actccaggaa aggtgctgct tttggtttta acgtaattgc taccagagct
     3661 ggagaacagt tggctccttt tctgcctcaa ctagttcctc gactttatcg ttaccagttt
     3721 gatcccaacc tgggaattcg acaggctatg acaagcattt ggaatgcatt ggtcaccgac
     3781 aaatcaatgg tggataaata tttgaaggaa attcttcaag atttgattaa aaaccttacc
     3841 agcaacatgt ggcgagttcg agaatccagc tgtttagctc tgaatgattt attgagagga
     3901 agacctttag atgacgtcat tgacaaactt ccagaaatgt gggaaacact ttttagagta
     3961 caagatgata ttaaggagtc tgtacggaag gcagcagagc tagctctgaa aactctgagc
     4021 aaggtttgtg tgaaaatgtg tgaccctgcc aaaggagcag ctggccagag aaccattgct
     4081 gtcctcctgc cctgccttct ggacaaagga atgatgagtc ctgtgacgga agtccgagcc
     4141 ctcagcatta acactcttgt gaagataagc aaaagtgcag gagccatgtt gaaaccacac
     4201 gcacccaaac tcataccagc actcctagag tccttaagtg tgctggagcc tcaagttctc
     4261 aattatttga gtctccgggc tacggaacaa gaaaaggatg caatggacag tgctcggctc
     4321 agtgctgcca aatcctcccc catgatggag acaatcaaca tgtgcctgca gtatctcgat
     4381 gtttcggtgc taggtgagct agttcctaga ttatgtgagc tgatcagaag tggtgtaggt
     4441 cttgggacaa agggaggctg tgccagtgtc atcgtgtctt taactacaca gtgtccccag
     4501 gacctgacac cttactcagg taaacttatg agtgctttgc ttagtggtct gacagatcgg
     4561 aacagtgtaa ttcagaaatc ctgtgcattt gccatgggcc atttagttcg gacttcacgg
     4621 gatagcagca ctgaaaaact gctacagaag ctcactgcct ggtacatgga gaaggaagaa
     4681 cctatctata agacctcttg tgctttgaca attcatgcaa ttggaagata cagccctgat
     4741 gtattgaaga accatgctaa agaagttctg cccttagcat ttttaggcat gcatgaaatt
     4801 gctgatgagg agaaatccga aaaagaagag tgtaatatgt ggactgaagt gtggcaggaa
     4861 aatgtacctg gttcctttgg aggtattcga ttgtacctgc aggaattgat tactattacc
     4921 cagaaggctt tacaatcaca gtcttggaaa atgaaagccc agggtgcaat tgctatggca
     4981 tcaattgcaa aacaaacaag ctctcttgta cctccttatc tggggatgat actgagtgca
     5041 ttggtacaag gcctggctgg aagaacatgg gcaggaaagg aagaactatt gaaagccatt
     5101 gcctgtgtag tgacggcttc cagtacagag ttggaaaagt ctgtgcccaa tcaacccacc
     5161 acaaatgaaa ttcttcaggc tgtcctgaag gagtgttgca aagagaatct gaaatataag
     5221 attgttgcaa tcagctgtgc agctgatgtt ctgaaagcca ccaaagaaga caggttccag
     5281 gagttttcgg acattgtcat gcccctcatc aagaagaact cacttgaaag catgggagtt
     5341 cgtacaacca aagctgaaga cgaaaatgag aaggaaagag agctgcagct ggagtctctg
     5401 ctgggcgcct tcgagagcct gggaaaagca tggcctagga acccagacac ccaacgttgt
     5461 tatcgtcagg agatgtgcaa actgatgtgt gagcggctaa gactcagcac atggaaagtg
     5521 caactaggtg tcctccagtc aatgaacgcc ttttttcagg ggttaatgct tctggaagaa
     5581 gagcatgcag atcctgaagc tctggctgag attcttcttg aaacttgtca gtcaattacg
     5641 tattctttag aaaataaaac ctactcgtct gtgagaacag aagctttatc tgtgatagaa
     5701 ttactgctta aaaaacttga agaaggtaaa cagtgggaaa gtttgacagc agaatgcaga
     5761 agacttttga ttgagtcttt agctactatg gagacagaca acaggccaga gctgcaggag
     5821 aaagcctcag tattgaagaa aacacttgaa agtctggaat gaatgaggag gggaaaaaca
     5881 agtgccatgt tctttcggga ttgaaaatag tggtgatttt ttaaaaacca agtgggggaa
     5941 agtaaaggtt actctgtagc atgcatcatt ccgtggctga aataaaaaaa aaaagcctta
     6001 aattttgctc cttattagct ttattttact tgtctttaaa gtatgtgggc taagtgaact
     6061 attaacttgg gtttttgaaa ggtagttgta aatatgtctg gcaaccattg ttgccaaaag
     6121 aactgaaact attataaatg aaatacaggg caagcaggat taagatttta gcactacatc
     6181 catgctgaac tcgctgtaga aagggatcct gtaggtcact cgatatgtaa ccttacttct
     6241 tgcactccct aagatatagg attgggatgg caaagcctct gaggccaggc gccaaggcca
     6301 cagacccaaa gtttaacatc ctgccttgga tatttttctc agcctcttac caaaccagtg
     6361 tttatcctgc ccctatccta gaaattccca aagtgaggta cattttaggg tgtcatacaa
     6421 cagttctcat tctagcgcta aactgactct tatcactgga ctctgaaact cacatgctat
     6481 gcatttcctg tgcataggtg gtcacttttc agggaatggt ttattcagcc tgtttatagg
     6541 ttgagaatat tcgaacttca taaaattctg attgctgtca tgttactgga aaataaaagt
     6601 agattggagt aaggttagag caagtctgtc tgtatttgtg atcatgtatt tttccaaaat
     6661 ctaaaatagc agtaaaaatt agagattgcc ttggtttaga ccacttaaaa acctggaaac
     6721 agtaacttaa cactttctac tgtcatgcat acagtgtgac ttggaaggaa ggatgggaag
     6781 ccttttagtt aactgtctga gattaaatgc cctctctcaa attagcatga taacattcaa
     6841 gtaaactgtt gttgccaggg tcttccccct gctttctgct gctcctgtac ctgctgaagg
     6901 gtgcagggtt gttaacttaa gtttatggta agctaaaacc tctagcttgt ctttttggag
     6961 cacaagattg atttatatat tcagtactat ctctttgatg acatcaacac ctggaatctt
     7021 catggtcagt atttttggtc aaaactccat gtttagtttg gtagtctgca gaccagtgta
     7081 tttcaagtat ttttaactgt gactcacaat aaaaataaca tctgattcag aatgtgtgtg
     7141 tgtctgtgtg tgtgtgagtg ttggtgtatg tatgtgtgaa tgtaaagccc ttaactgaac
     7201 tatttcatga agaaatactt agttgctaag tttggtacac tttaatctct ttgtgtctca
     7261 ctgttgtaaa tgttcttcag actcactcga ttcatttcct gattcacaaa ctaggttgct
     7321 atttaagttt gaacaatact gccactgata acacctaaac ttctactgta tttgagactg
     7381 tttctgactg aagctctcta ctgaaatgtt cattgctcat ttggtatcat ctttgctgat
     7441 actggactac agtagtgagt ttgtagaaca tcgtgagttc taaagaatct gtcgtagaat
     7501 tgcatttaag aatggctttt gctctagaga aaaacaaatg gtttcaaatg ttctttagaa
     7561 agatgtggcc tctcaggata tgatgggttt tttttttttt ttttggatca gcattgaatg
     7621 cattaaggac ctacctgact ttcatttgta gtgtccagga cgctgccttg gcaagaatgc
     7681 aatgcaggtc aggtatgttg ttgaagatga gagggtaagg gcaagaataa tgtacttggt
     7741 ctgtagcaaa tgttgaaatc tcatccaata ttatgctttt taaatttttt tgttatttaa
     7801 cattggggat ttcccttggt gctgagatgg tgctaagaca cctgaacctt agtgctattg
     7861 ctttacatgt cttttacttt cctgagcaca tttctaatta tatacttaat gccttcatgc
     7921 tcgccagcaa atcatcttca cagctagtaa tgctgtgtta ctgtttcaaa tatactttat
     7981 gcttggtatg catatatgtt tattttaaaa ggttaataat caggactctg taattgtaga
     8041 atgttggtac tggtgaacat gtggtaaagt acctgtacat gcatatatca tcagtcttta
     8101 tttgccaaag ctatcttgaa tgacttgatt tttctctata tattcatttc tgtttgtcac
     8161 acaaataact agtttggaag acttgttcct tattcctgcc attagttcag taactctatc
     8221 tttattgaga cgtgaaaaat gtctggattg tagcagttgg gttgaatatg aaaatggtct
     8281 acggtttggt ggtcaagagt agctgttcca ttgaatgttc gtgtcctgct tacactttct
     8341 tggggatctg tctataacac agtccactta aataagaggg ctaccaaatc cccattgctt
     8401 tgcccttcca tttttttttt taaactcatg tattatacag taagaaaaga atgtgacctc
     8461 actggttggt gccctatcag cagttgtgct gtctgagcac tgcctgccct tgtggaacat
     8521 ttctacctgc tgctgtcaca gtatattcat gctgcttgtt aagttcaggg agttattttg
     8581 acattggcac ttacaaaact gtgcaatctg tcattaaatg gatgtatatg taacagattt
     8641 ttgtatttta tatgcaactt cgtagatcct ctgcaatatg tacttagcta cctaagcatg
     8701 aaatagactt atttgaaaga aaaaaaaact cacttactcc ccaaagatat taaatggtaa
     8761 ataaaagttg catgacctgg ca
//
