LOCUS       XM_039096237            3487 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus extracellular matrix protein 2 (Ecm2),
            transcript variant X2, mRNA.
ACCESSION   XM_039096237
VERSION     XM_039096237.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096237.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3487
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3487
                     /gene="Ecm2"
                     /note="extracellular matrix protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 11 ESTs, 6 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     15 samples with support for all annotated introns"
                     /db_xref="GeneID:100361383"
                     /db_xref="RGD:2320282"
     CDS             921..2741
                     /gene="Ecm2"
                     /codon_start=1
                     /product="extracellular matrix protein 2 isoform X1"
                     /protein_id="XP_038952165.1"
                     /db_xref="GeneID:100361383"
                     /db_xref="RGD:2320282"
                     /translation="MKQAVWFCLLLLILLTVFQTDCEPSPRRQRRRMHQRLRKSSSLY
                     PRADRWLEVQQTTAAPDAGLPTAHSDYSVEENIQSLLGNLGVESSYGVLPGKKGHCSV
                     KGMVMYNKAVWSPEPCTTCLCSNGRVLCDETTCPPKTCPYTVKPEGECCPICSDTEQQ
                     ESINQGRRKEEDSEEETEREGEEEEEEEEEEEEEEEEEDGVRGDVFRMSSRLIPGIPR
                     GRPRLPRSCSLSYRTISCIYGDFTEIPPITAPEVTTLELVGNSIISIPNEAFNGLPNL
                     ERLDLSRNNITSSGIGPKAFKLLKKLMHLNMDGNNLVHIPSELPSTLEELKINDNNLQ
                     AIDEKSLSDLNQLVALELEGNNLSEINVNPLAFKSLKNLSYLRLGKNKFRIIPQGLPA
                     SIEELYLENNQIEEITEICFNHTRKITMIVLRYNKIEESRIAPLAWINHENLESIDLS
                     YNKLYHVPSYLPKSLLHLVLIGNQIERIPGYVFGHMKPGLEYLYLSFNRLSDDGVDLV
                     SFYGAYHSLRELFLDHNDFKSIPPGIQGMKALHFLRLNNNKIRNILPEQICNAEEDED
                     SALEHLHLENNYITTRAMSPYAFSCIRLYSSVVLKPQRIK"
ORIGIN      
        1 tctatgtcct atttctaaat gaaatacatt tctagagatt ataaaatgtt atttatctac
       61 aatctggatt ttttgttttt ttcaatacag agcttccttg tgtagccctg gctgccctca
      121 gagaacctcc tgagtgctgg gatcaaaggt gtgcgccacc actacccagc tgtatattaa
      181 ctgttaatta cttgttaata ctcaaatttt ggactcaaac ttgggcctgc cacttagcca
      241 cagtctcagt ccttgggttg tacgcttctg agacagggtc tcatgtgata tccaggcagc
      301 ccctgaacct cagctctcta atgctgagga cataggtgtg cgccatcaca tccaaagaaa
      361 gaagacgctt taaaacaatg gaagacgact ttaggagaac ggaggagaag aaaattagat
      421 gataaaggat tgcagaatat tgacaaggtg gttatataaa aactaaacaa aaatatgacc
      481 ttctcagaca cctagtgaag tatccacagg taaaatttca tcatgcagta gatttcagct
      541 aaactcctgc caagaaagcg actgtataag caagtaagta agggaaggag acagcgtgga
      601 accatgaggc cagttactgc agcaggacaa cagtatggtg gttcatggga tactttctac
      661 ttttgaatat ggttgaaaat ttctataatg aaaggacttt taaaaagaaa gcatttgaaa
      721 tacctgccta attccacaat ctgaaacttg ggaaacaggc actgaaacct ggtcttactt
      781 tgtctaacat tcttttcttt tcaactttac tggagtttcc cttagatttt aataaagttt
      841 caactgtggt gcttggagat tttaaacgat acaaggaact gcagagaact ttgttggtga
      901 aaaaaaaaaa aaaatcgaac atgaagcaag cggtttggtt ctgtctcctt ctgcttattc
      961 tgcttactgt ctttcaaacc gactgtgaac caagtcccag aaggcaaagg aggaggatgc
     1021 accaaagact caggaaaagc tcttcactct accccagagc cgacaggtgg cttgaagttc
     1081 agcaaaccac tgctgcacca gatgctgggc tacccactgc ccactctgat tacagtgtgg
     1141 aggaaaacat acagtcactt ctaggcaatc ttggagtaga atcaagttac ggtgtgctac
     1201 caggaaagaa aggacactgc tctgtaaagg gcatggtcat gtacaacaaa gctgtctggt
     1261 ctcctgagcc ctgcaccacc tgcctctgct caaatggaag agtgctttgt gatgaaacta
     1321 cgtgcccccc caagacatgc ccctataccg tcaaaccgga aggagagtgc tgccccatct
     1381 gctctgacac tgaacaacaa gaatccatta accaaggaag aaggaaggaa gaggacagtg
     1441 aggaggagac tgagagagaa ggagaggaag aggaggaaga ggaggaggag gaggaggagg
     1501 aagaggagga agaagatggt gtaagaggag atgtgttcag aatgtcttcc cggttaatac
     1561 ctggaatccc aagaggcagg ccacgcctgc ccagaagctg ttctctgtcc tacaggacta
     1621 tcagttgcat ttatggagac ttcactgaga tcccacccat aacagcacca gaagtaacga
     1681 ccctggagct ggttgggaat tcaatcatct ccattccaaa tgaagcattt aatggattac
     1741 caaatttgga aagacttgat ctgagcagaa ataatatcac ttcttcaggc ataggtccaa
     1801 aagcattcaa gcttttgaag aagttaatgc atctgaacat ggacggaaat aatttggtac
     1861 atattccttc tgaattacca tctacactag aagaacttaa aataaacgac aacaatctcc
     1921 aggctatcga tgagaaaagc ttatcagact taaatcaact tgtcgcttta gaattggagg
     1981 gaaacaatct cagtgaaatc aatgtcaacc ctctagcttt caaatccttg aagaacttat
     2041 catacctacg tctgggaaaa aacaaattca gaatcatacc acaaggtctt ccagcttcta
     2101 ttgaggagtt gtacctagaa aataatcaaa ttgaagaaat aactgaaatt tgtttcaatc
     2161 acaccagaaa gataactatg attgtactac gttataataa aatagaagaa agtcggattg
     2221 ctcctttagc atggataaat cacgaaaatc ttgaatctat cgacctgtcc tacaacaagc
     2281 tctaccacgt cccctcctat ctacccaaat ctcttttgca ccttgtccta attgggaacc
     2341 aaattgaacg gatccctggc tatgtgtttg gccacatgaa accaggcctg gagtacttgt
     2401 acctgtcatt taacagactt tctgatgatg gtgtggacct agtctcgttc tatggagcat
     2461 atcattctct gagagaacta tttctggatc acaatgactt caaatccata ccccctggaa
     2521 tacaaggaat gaaagcattg cattttctga ggctgaacaa caataagata cggaacatcc
     2581 ttcctgaaca aatctgcaat gctgaggaag atgaggactc agctcttgaa caccttcatc
     2641 ttgaaaacaa ttacatcaca actagagcta tgtcgcccta tgcgttttca tgcataagac
     2701 tgtactcaag tgttgttctt aaaccacaac gcatcaagta acttcaagtt tctctttgcc
     2761 atttataaat tttacccaag cataacaagc attacatctc ttttgtgtgt gtgtgtgtgt
     2821 gtgtgtgtgt gtgtgtgtgt ttgtacacga gtgcaatgtc ctcaggaact agaagaggct
     2881 gttggacgcc ctgaagctgg agttcaggtg gatctgtgct gtgaattgaa cttgggtaca
     2941 ctctaagagc agtacacgtt ctcgatggat tgatccatgc ctcaagtccc caaaatacca
     3001 ttctcatgct aatttcgtgg tttagatcat tttacaatgg ttaactatgc atattggtaa
     3061 tggtaaggaa agctagcaga agggcataca aaaattctac actgtaagcc tagaattagt
     3121 tcttaaaata aaaaaaaaat tttcaagatt gctttcattc ttcagcaaga tcaaaagatt
     3181 acaaaaagta aactgggcat ggtggcacat gcctttgatc ccaacatttg ggaaacagag
     3241 accagaggat ctctctgagt ttgaggccag cctggtttat atagtgagtt tcaggacagc
     3301 atggactatg taaagacctt gtcatacaaa aagactacaa gaagcaaata ctcttctaaa
     3361 tatacaaatt actgttaact acaagctgat gtaaatgtaa atacaactta ttcctccact
     3421 agttagagag ttagcaacca tctcctttgc tagatttcta aaataaactt tttgtcagtt
     3481 taatgaa
//
