LOCUS       XP_038952165             606 aa            linear   ROD 22-FEB-2024
DEFINITION  extracellular matrix protein 2 isoform X1 [Rattus norvegicus].
ACCESSION   XP_038952165
VERSION     XP_038952165.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_039096237.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..606
                     /product="extracellular matrix protein 2 isoform X1"
                     /calculated_mol_wt=68852
     Region          100..154
                     /region_name="VWC"
                     /note="von Willebrand factor type C domain; pfam00093"
                     /db_xref="CDD:278520"
     Region          251..580
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          252..275
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          276..301
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          302..321
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          323..346
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          347..372
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          373..393
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          394..417
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          418..443
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          444..489
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          517..539
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          540..568
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     Region          569..591
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275380"
     CDS             1..606
                     /gene="Ecm2"
                     /coded_by="XM_039096237.2:760..2580"
                     /db_xref="GeneID:100361383"
                     /db_xref="RGD:2320282"
ORIGIN      
        1 mkqavwfcll llilltvfqt dcepsprrqr rrmhqrlrks sslypradrw levqqttaap
       61 daglptahsd ysveeniqsl lgnlgvessy gvlpgkkghc svkgmvmynk avwspepctt
      121 clcsngrvlc dettcppktc pytvkpegec cpicsdteqq esinqgrrke edseeetere
      181 geeeeeeeee eeeeeeeedg vrgdvfrmss rlipgiprgr prlprscsls yrtisciygd
      241 fteippitap evttlelvgn siisipneaf nglpnlerld lsrnnitssg igpkafkllk
      301 klmhlnmdgn nlvhipselp stleelkind nnlqaideks lsdlnqlval elegnnlsei
      361 nvnplafksl knlsylrlgk nkfriipqgl pasieelyle nnqieeitei cfnhtrkitm
      421 ivlrynkiee sriaplawin henlesidls ynklyhvpsy lpksllhlvl ignqieripg
      481 yvfghmkpgl eylylsfnrl sddgvdlvsf ygayhslrel fldhndfksi ppgiqgmkal
      541 hflrlnnnki rnilpeqicn aeededsale hlhlennyit tramspyafs cirlyssvvl
      601 kpqrik
//
