LOCUS       NM_001415850            2943 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus EBF family member 4 (Ebf4), transcript variant 1,
            mRNA.
ACCESSION   NM_001415850 XM_039105848
VERSION     NM_001415850.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2943)
  AUTHORS   Wang,S.S., Betz,A.G. and Reed,R.R.
  TITLE     Cloning of a novel Olf-1/EBF-like gene, O/E-4, by degenerate
            oligo-based direct selection
  JOURNAL   Mol Cell Neurosci 20 (3), 404-414 (2002)
   PUBMED   12139918
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 4, 2023 this sequence version replaced XM_039105848.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-416               JAXUCZ010000003.1  137951335-137951750
            417-538             JAXUCZ010000003.1  137952203-137952324
            539-695             JAXUCZ010000003.1  137962548-137962704
            696-759             JAXUCZ010000003.1  137962934-137962997
            760-815             JAXUCZ010000003.1  137963115-137963170
            816-889             JAXUCZ010000003.1  137964838-137964911
            890-958             JAXUCZ010000003.1  137965843-137965911
            959-1040            JAXUCZ010000003.1  138007954-138008035
            1041-1158           JAXUCZ010000003.1  138008736-138008853
            1159-1292           JAXUCZ010000003.1  138008938-138009071
            1293-1419           JAXUCZ010000003.1  138009166-138009292
            1420-1508           JAXUCZ010000003.1  138010679-138010767
            1509-1574           JAXUCZ010000003.1  138010894-138010959
            1575-1746           JAXUCZ010000003.1  138011055-138011226
            1747-1932           JAXUCZ010000003.1  138011311-138011496
            1933-2130           JAXUCZ010000003.1  138014512-138014709
            2131-2206           JAXUCZ010000003.1  138018658-138018733
            2207-2943           JAXUCZ010000003.1  138018929-138019665
FEATURES             Location/Qualifiers
     source          1..2943
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2943
                     /gene="Ebf4"
                     /note="EBF family member 4"
                     /db_xref="GeneID:680751"
                     /db_xref="RGD:1588215"
     exon            1..416
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..2201
                     /gene="Ebf4"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; transcription factor COE4; early B-cell factor
                     4-like"
                     /codon_start=1
                     /product="transcription factor COE4 isoform 1 precursor"
                     /protein_id="NP_001402779.1"
                     /db_xref="GeneID:680751"
                     /db_xref="RGD:1588215"
                     /translation="MARARGQAPGSGGRRRPRRGGAGTGPRGDSAGLLLLLLQVLPPG
                     AAAGPGRRGTRGSGGGCVCWPSAGPAFPRDARLLLLLPPRPPPSPPPTSTAAASPSRM
                     DALPRGGLHLKEEPLLPSSLGSVRSWMQSAGILDSSTAAQSGVGLARAHFEKQPPSNL
                     RKSNFFHFVLAMYDRQGQPVEVERTAFIDFVEKDREPGTEKTNNGIHYRLRLVYNNGL
                     RTEQDLYVRLIDSMSKQAIIYEGQDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPS
                     DPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVSVDGHVLAVSDNMFVHN
                     NSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIIIGDNFFDGLQVVFGNVLLW
                     SELITPHALRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGFQRL
                     QKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPNSNQELLLKRAADVAEALYSAPRA
                     PAPLGPLAPSHPHPAVVGINAFSSPLAIAVGDATPEPGYARSCGSASPRFAPSPGSQQ
                     SSYGSGLGAGLGSYGAPGVTGLGVPGSPSFLNGSTATSPFAIMPSSPPLAAASSMSLP
                     AAAPTTSVFSFSPVNMICAVKQRSAFAPVLRPPSSPSQACPRAHREGLPDQPFEDTDK
                     FHSAARGLQGLAYS"
     exon            417..538
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            539..695
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            696..759
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            760..815
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            816..889
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            890..958
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            959..1040
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1041..1158
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1292
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1419
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1508
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1509..1574
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1575..1746
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..1932
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1933..2130
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            2131..2206
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            2207..2943
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctcccctg gccccgagtc ccctgggccc acccgcttgc gacagccctc cttttgcccg
       61 tgctccctcc ctagggctcc cgctccccag ggagcggcgg tggcggcggg atggccaggg
      121 cccgcggcca ggccccgggg agcggcgggc ggcggcgtcc gcggcgggga ggcgcgggga
      181 ccgggccccg gggggactcg gccggtctgc tgctgctcct gctgcaggtg ctgccgcccg
      241 gggcagcggc aggcccgggg cgccggggca ctcgggggtc tggcggcggc tgcgtctgct
      301 ggcccagcgc cggccctgct tttccgcggg acgcgcgtct gctgctgttg ctgccgcccc
      361 ggccaccacc gtcgccgccg ccgacctcca cggccgcagc ctccccctct cggatggacg
      421 ctctgccccg cggtgggctc cacttgaaag aggagccgct gctgccctcc agcctgggct
      481 ccgtgcgctc ctggatgcag agcgcgggca tcctggactc cagcaccgcg gcgcagagtg
      541 gcgtgggcct ggcaagagca cattttgaaa agcagccccc ctccaacctc aggaagtcca
      601 acttcttcca cttcgtgctg gccatgtacg accggcaggg gcagcccgtg gaggtggagc
      661 gcacagcctt catcgacttc gtggaaaagg atcgagagcc tgggacagaa aaaacaaaca
      721 acgggatcca ttaccgtctt cggctggtgt ataataatgg acttcggaca gaacaagacc
      781 tctacgtacg acttattgac tccatgtcaa agcaggctat catctatgag ggacaggaca
      841 agaatcccga aatgtgccgg gtgctgctca ctcatgagat catgtgcagt cggtgctgtg
      901 accgcaagag ctgtggtaac cggaacgaga cgccttctga tccagtcatt attgacaggt
      961 tcttcctcaa attctttctc aaatgcaacc agaactgttt gaagaatgcc gggaatcccc
     1021 gagacatgcg ccgcttccag gtggtggtgt ccacgacagt gagtgtggac ggacacgtgc
     1081 tggctgtgtc agacaacatg tttgtgcaca acaactccaa gcatggacgc agagcccgac
     1141 gcctggaccc ttctgaagct gccaccccat gcatcaaggc catcagcccc ggggagggct
     1201 ggaccacggg aggcgccacc gtcattatca tcggagacaa cttcttcgac gggttgcagg
     1261 tcgtgtttgg caacgtgctc ctgtggagcg agctcatcac tccccatgct ctccgggtgc
     1321 agacgccacc acgacacata cccggggtag tagaagtgac cctctcctac aagtccaagc
     1381 agttttgtaa aggagcccct ggccgctttg tctacacagc cctgaatgaa cccaccattg
     1441 actacggatt ccagaggcta cagaaagtca ttcccagaca cccaggagac cctgagaggc
     1501 tacccaagga agtgctgttg aaaagggcgg ctgatttggc ggaggctctg tatggagtgc
     1561 ccaacagtaa ccaggagctc ctcctgaaac gggcggcgga tgtagccgag gctctgtaca
     1621 gcgccccgcg cgcgcctgca ccactcggac ccctggcccc cagccacccg caccccgctg
     1681 tcgtgggcat caacgctttc agcagccctc tggctatcgc cgtcggggat gccacaccgg
     1741 agccgggcta tgcccgtagc tgcggcagcg cgtctccccg gttcgcgccc agccctggct
     1801 ctcaacaaag cagctatggc agtggtcttg gagccggcct cggtagctat ggagcgcccg
     1861 gtgtgactgg ccttggcgtg cccgggtccc ctagcttcct caatggctcc actgcaacct
     1921 cacctttcgc catcatgccc tctagccccc cgctggcggc tgcctcctcc atgtcccttc
     1981 cggccgctgc ccccaccacc agcgtcttct ccttctcgcc tgtcaacatg atctgcgctg
     2041 tcaagcagag aagcgccttc gcccctgtgc tgcgcccacc cagctcccca tcgcaggcct
     2101 gccccagagc ccacagagag gggcttccag accagccttt tgaagatact gacaagttcc
     2161 actctgcagc tcggggactc cagggcctgg catactccta atcatggtgc tgtccccagt
     2221 gagtctggac tggaggtctt tctggtttca cgttcatggc tggatggcag cacaaagaga
     2281 tatagggtca ggactttgag tggacctcaa tccctgggat gcacagggag aggccttcac
     2341 ctctgtgctg gaggccccct catacctaaa gaccttcatg tttacctctc tttcttgggg
     2401 cacataagaa gcccagcact gtgaggacgc tcttggcaga agggcatcat agggaggtgt
     2461 tgggatgttg ggccttacta ttggtaagat gagcaagaat cgggaatggt gagaaagagg
     2521 acagctcagg gagaggtcat caggagaggc cctgtttgca tctgaccaat cacacctgac
     2581 ctagtagcca ccttctctct tgtgagcaag gtgtctagca gtctcaggag gcccattcag
     2641 gctcctatgg agctgcccac aagtccctgg accccaatgg ctgccttcac atcctctgag
     2701 agtagcacat tcatgctgat cataccccac atccctgtgg gggctttagg catggaagct
     2761 gcatagaagg gcctcctgga ttttgactct gaccccaatg gatgtttcat gaaatttgtc
     2821 cccctaccac cacacaccca gctctagctg gccccaaaga acagcctggc tgcaccttgg
     2881 tggcctcaca ttcatcagag tttggacaaa atggaacaat aaaaacagat gcaggtggcc
     2941 acg
//
