LOCUS       NM_001191076            2828 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus EBF family member 4 (Ebf4), transcript variant 2,
            mRNA.
ACCESSION   NM_001191076 XM_001059875
VERSION     NM_001191076.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2828)
  AUTHORS   Wang,S.S., Betz,A.G. and Reed,R.R.
  TITLE     Cloning of a novel Olf-1/EBF-like gene, O/E-4, by degenerate
            oligo-based direct selection
  JOURNAL   Mol Cell Neurosci 20 (3), 404-414 (2002)
   PUBMED   12139918
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC130173.7 and JAXUCZ010000003.1.
            
            On Aug 5, 2016 this sequence version replaced NM_001191076.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            a mix of genomic sequences to compensate for a gap in the assembly.
            The genomic coordinates used for the transcript record were based
            on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760494 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-211               AC130173.7         86448-86658         c
            212-368             JAXUCZ010000003.1  137962548-137962704
            369-432             JAXUCZ010000003.1  137962934-137962997
            433-488             JAXUCZ010000003.1  137963115-137963170
            489-562             JAXUCZ010000003.1  137964838-137964911
            563-631             JAXUCZ010000003.1  137965843-137965911
            632-713             JAXUCZ010000003.1  138007954-138008035
            714-831             JAXUCZ010000003.1  138008736-138008853
            832-965             JAXUCZ010000003.1  138008938-138009071
            966-1092            JAXUCZ010000003.1  138009166-138009292
            1093-1181           JAXUCZ010000003.1  138010679-138010767
            1182-1247           JAXUCZ010000003.1  138010894-138010959
            1248-1419           JAXUCZ010000003.1  138011055-138011226
            1420-1605           JAXUCZ010000003.1  138011311-138011496
            1606-1803           JAXUCZ010000003.1  138014512-138014709
            1804-2828           JAXUCZ010000003.1  138018658-138019682
FEATURES             Location/Qualifiers
     source          1..2828
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2828
                     /gene="Ebf4"
                     /note="EBF family member 4"
                     /db_xref="GeneID:680751"
                     /db_xref="RGD:1588215"
     exon            1..211
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     CDS             75..1874
                     /gene="Ebf4"
                     /note="isoform 2 is encoded by transcript variant 2;
                     transcription factor COE4; early B-cell factor 4-like"
                     /codon_start=1
                     /product="transcription factor COE4 isoform 2"
                     /protein_id="NP_001178005.1"
                     /db_xref="GeneID:680751"
                     /db_xref="RGD:1588215"
                     /translation="MFPAQDALPRGGLHLKEEPLLPSSLGSVRSWMQSAGILDSSTAA
                     QSGVGLARAHFEKQPPSNLRKSNFFHFVLAMYDRQGQPVEVERTAFIDFVEKDREPGT
                     EKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMSKQAIIYEGQDKNPEMCRVLLTHEI
                     MCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVST
                     TVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVII
                     IGDNFFDGLQVVFGNVLLWSELITPHALRVQTPPRHIPGVVEVTLSYKSKQFCKGAPG
                     RFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPNSNQE
                     LLLKRAADVAEALYSAPRAPAPLGPLAPSHPHPAVVGINAFSSPLAIAVGDATPEPGY
                     ARSCGSASPRFAPSPGSQQSSYGSGLGAGLGSYGAPGVTGLGVPGSPSFLNGSTATSP
                     FAIMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMICAVKQRSAFAPVLRPPSSPSQA
                     CPRAHREGLPDQPFEDTDKFHSAARGLQGLAYS"
     exon            212..368
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            369..432
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            433..488
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            489..562
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            563..631
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            632..713
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            714..831
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            832..965
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1092
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1093..1181
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1182..1247
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1248..1419
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1420..1605
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1606..1803
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
     exon            1804..2828
                     /gene="Ebf4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgagctgaga cgcccacagt ctcggcggga cgggatccct ggcagtgggg ggcgcccacg
       61 aactgcgggt ccttatgttt cccgcacagg acgctctgcc ccgcggtggg ctccacttga
      121 aagaggagcc gctgctgccc tccagcctgg gctccgtgcg ctcctggatg cagagcgcgg
      181 gcatcctgga ctccagcacc gcggcgcaga gtggcgtggg cctggcaaga gcacattttg
      241 aaaagcagcc cccctccaac ctcaggaagt ccaacttctt ccacttcgtg ctggccatgt
      301 acgaccggca ggggcagccc gtggaggtgg agcgcacagc cttcatcgac ttcgtggaaa
      361 aggatcgaga gcctgggaca gaaaaaacaa acaacgggat ccattaccgt cttcggctgg
      421 tgtataataa tggacttcgg acagaacaag acctctacgt acgacttatt gactccatgt
      481 caaagcaggc tatcatctat gagggacagg acaagaatcc cgaaatgtgc cgggtgctgc
      541 tcactcatga gatcatgtgc agtcggtgct gtgaccgcaa gagctgtggt aaccggaacg
      601 agacgccttc tgatccagtc attattgaca ggttcttcct caaattcttt ctcaaatgca
      661 accagaactg tttgaagaat gccgggaatc cccgagacat gcgccgcttc caggtggtgg
      721 tgtccacgac agtgagtgtg gacggacacg tgctggctgt gtcagacaac atgtttgtgc
      781 acaacaactc caagcatgga cgcagagccc gacgcctgga cccttctgaa gctgccaccc
      841 catgcatcaa ggccatcagc cccggggagg gctggaccac gggaggcgcc accgtcatta
      901 tcatcggaga caacttcttc gacgggttgc aggtcgtgtt tggcaacgtg ctcctgtgga
      961 gcgagctcat cactccccat gctctccggg tgcagacgcc accacgacac atacccgggg
     1021 tagtagaagt gaccctctcc tacaagtcca agcagttttg taaaggagcc cctggccgct
     1081 ttgtctacac agccctgaat gaacccacca ttgactacgg attccagagg ctacagaaag
     1141 tcattcccag acacccagga gaccctgaga ggctacccaa ggaagtgctg ttgaaaaggg
     1201 cggctgattt ggcggaggct ctgtatggag tgcccaacag taaccaggag ctcctcctga
     1261 aacgggcggc ggatgtagcc gaggctctgt acagcgcccc gcgcgcgcct gcaccactcg
     1321 gacccctggc ccccagccac ccgcaccccg ctgtcgtggg catcaacgct ttcagcagcc
     1381 ctctggctat cgccgtcggg gatgccacac cggagccggg ctatgcccgt agctgcggca
     1441 gcgcgtctcc ccggttcgcg cccagccctg gctctcaaca aagcagctat ggcagtggtc
     1501 ttggagccgg cctcggtagc tatggagcgc ccggtgtgac tggccttggc gtgcccgggt
     1561 cccctagctt cctcaatggc tccactgcaa cctcaccttt cgccatcatg ccctctagcc
     1621 ccccgctggc ggctgcctcc tccatgtccc ttccggccgc tgcccccacc accagcgtct
     1681 tctccttctc gcctgtcaac atgatctgcg ctgtcaagca gagaagcgcc ttcgcccctg
     1741 tgctgcgccc acccagctcc ccatcgcagg cctgccccag agcccacaga gaggggcttc
     1801 cagaccagcc ttttgaagat actgacaagt tccactctgc agctcgggga ctccagggcc
     1861 tggcatactc ctaatcatgg taggtgtcca ctgggtctct ccctttcatc tggccctgac
     1921 atgggtttat cagggtgggt agttggggtc caagtcttcc tttcttgtgc ctgtctagat
     1981 aactgacctc agaacacgct cagagaaagg acttcccttt cttgcagaca gcctctctgc
     2041 aagactttct tctctcctct ttccacgtct gcaggtgctg tccccagtga gtctggactg
     2101 gaggtctttc tggtttcacg ttcatggctg gatggcagca caaagagata tagggtcagg
     2161 actttgagtg gacctcaatc cctgggatgc acagggagag gccttcacct ctgtgctgga
     2221 ggccccctca tacctaaaga ccttcatgtt tacctctctt tcttggggca cataagaagc
     2281 ccagcactgt gaggacgctc ttggcagaag ggcatcatag ggaggtgttg ggatgttggg
     2341 ccttactatt ggtaagatga gcaagaatcg ggaatggtga gaaagaggac agctcaggga
     2401 gaggtcatca ggagaggccc tgtttgcatc tgaccaatca cacctgacct agtagccacc
     2461 ttctctcttg tgagcaaggt gtctagcagt ctcaggaggc ccattcaggc tcctatggag
     2521 ctgcccacaa gtccctggac cccaatggct gccttcacat cctctgagag tagcacattc
     2581 atgctgatca taccccacat ccctgtgggg gctttaggca tggaagctgc atagaagggc
     2641 ctcctggatt ttgactctga ccccaatgga tgtttcatga aatttgtccc cctaccacca
     2701 cacacccagc tctagctggc cccaaagaac agcctggctg caccttggtg gcctcacatt
     2761 catcagagtt tggacaaaat ggaacaataa aaacagatgc aggtggccac ggggcctctt
     2821 gtgcctgc
//
