LOCUS       XM_039083413            4177 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 3 (Ebf3),
            transcript variant X13, mRNA.
ACCESSION   XM_039083413
VERSION     XM_039083413.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083413.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4177
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4177
                     /gene="Ebf3"
                     /note="EBF transcription factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     46 samples with support for all annotated introns"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
     CDS             37..1530
                     /gene="Ebf3"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X13"
                     /protein_id="XP_038939341.1"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTT
                     GGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ
                     FCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG
                     MPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSE
                     TSQANDQVKQKSAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM"
ORIGIN      
        1 ttcggctggg agtcgcggcc gctgccagca gtgttcatgt ttgggattca ggagaatatt
       61 ccgcgcgggg ggacgaccat gaaggaggag ccgctgggca gcggcatgaa cccggtgcgc
      121 tcgtggatgc acacggcagg cgtggtggac gccaacacgg ccgcccagag cggcgtgggg
      181 ctggcgcggg cgcacttcga gaagcagcct ccttccaacc tccggaaatc caatttcttc
      241 cacttcgtgc tggcgctcta cgacaggcag gggcagccgg tggagatcga aaggaccgct
      301 tttgtggact ttgtggagaa agagaaagag ccgaataacg agaaaaccaa caacggcatt
      361 cactacaagc tgcagctact gtacagcaat ggcgtcagga cagagcaaga tctgtatgtc
      421 cgcctcatag attcaatgac caaacaggcc atcgtgtatg aaggccagga caaaaatccg
      481 gagatgtgcc gcgtgctgct gacccatgag atcatgtgca gccggtgctg tgacaagaag
      541 agttgtggca ataggaacga aacaccctca gaccctgtaa tcattgacag attctttcta
      601 aagttcttcc tcaagtgcaa tcagaactgc ttgaagaatg cgggcaaccc tcgggacatg
      661 cggaggttcc aggtcgttgt atcgacaacc gtcaacgtgg acggccacgt gctggccgtg
      721 tctgacaaca tgtttgtgca caacaattcc aaacacggga ggcgggcccg ccgcctagac
      781 ccgtcagaag gtacggcccc ttcttatctg gaaaatgcca ctccatgcat caaggccatc
      841 agccccagtg aaggctggac cacggggggc gccactgtga tcataatcgg ggacaacttc
      901 tttgacggtc tccaagttgt gttcggaact atgttggtgt ggagtgagct gataaccccc
      961 cacgccatcc gagtgcagac gccgccgcga cacatccctg gagttgttga agtgaccctc
     1021 tcctacaagt ctaagcagtt ctgcaaaggc gctcctggac gctttgtcta cactgccctt
     1081 aatgagccaa ccatagatta cggcttccag aggttgcaga aagtgatacc cagacatcca
     1141 ggtgaccccg aaaggttacc caaggaagtg ttactgaaga gggcggcaga ccttgtggaa
     1201 gccttgtatg ggatgcctca taacaaccag gagatcatcc tgaagagagc agccgacatt
     1261 gctgaggcac tgtacagcgt tccccgcaat cacaaccaga tccccacctt gggcaacact
     1321 ccagcacaca ctggcatgat gggtgtgaac tccttcagca gccagctagc cgttaatgtg
     1381 tcagagacct cacaagccaa tgaccaagtg aaacagaaga gcgctttcgc gcccgtggtc
     1441 cggccccaag cctcgcctcc tccttcctgc accagcgcca atgggaacgg acttcaagct
     1501 atgtctgggc tggtagtccc gcccatgtga gggactctgt ttaccttcac agcacccagc
     1561 atccaaggac ggacttcagg ggacacgtgt agtgtgctaa gacgtgctga tggaaatgct
     1621 atctccaaaa ctaaaaatca gcaacggttg aatgctacaa aagacattta aagattttat
     1681 ttaaactgtt aagaatcaac acgcgaacaa gcctactcct tcatgaacaa ttccatttta
     1741 ttgactgaac ttttctcaca tcttcacatt tctcagtcct gaagattaag gaaaacaaag
     1801 cgatgcctat tttgtataaa gtttctgatt ccgtcttggc tgtctagtgc gtgctatctg
     1861 tgtggggaga agcttcgtga atatgcaccg ttttgatgcc catgcaacac tgaggaagaa
     1921 agcctcgaaa catttttctg tactcatatt tagattcaca atggttgtgt atctctataa
     1981 tgtgaaatat ttttttgtgg tgaaaaaaag ggggccaagg aggtatgagc cattaactgg
     2041 aacagaggag gattatgact aggtgaattt ggggtggcag ggagggaggg agggtttatc
     2101 attgcttaac ttcatcttaa tgaaatgaaa ctttgtaact tattgtagtt agaaattgta
     2161 actttgatat cgaatctctt gccttcaaca agcacactga cagagaaaaa gattatgcta
     2221 ctgtctgttg gttccaatat tctcccacct agagcttcct gttaaagcaa gtgcggtcag
     2281 caacattttt tcaactttca cgcactgtaa acctattgca ttcttaggct actgtgaggt
     2341 ctatgtttct tgtacctgaa attgtccttt tgacttctag acccttcttc cccgatgtgt
     2401 tttgtatgtg gttataaaat tgtagacttt tgtgattttg ccaaagttgt agctaaatat
     2461 ttatacactt gtcttgaatt tttttcagat ccacttaaaa tatttagaaa aatgagtttt
     2521 attccttatg tgtcttatag gggataaaat gctctctcac gtgacgcttc ctttcccatg
     2581 aacacttgca gttgctaagg gactttattt tgtaacatat caattataaa tattgtattt
     2641 atctttgaaa ttttgtacat tgctttccct gccttctttt tttcacgtct gtattggtgt
     2701 ttgatctgcc cagtgttgaa gcatagggaa cgagcagaca ccaagagctt gtctctttaa
     2761 tccgttttgt tgaagtgaac caatgtcctt acatttcatt tgtacctaaa ccatttgcta
     2821 tcgtttagac tttccatccc ccaccccttt ttttatgttg aggaaaagtc aaattcattg
     2881 tttattttta tattattttt aagttatctg aacaaatact tttgaaaaga aaagtttgtt
     2941 gtatagtcaa aagaaaacgg tgtcagccgg ccgtgacaaa ttctagtagg ttctgtgcat
     3001 gtggagcggc cgtgaagggg ccacaccgtc caggctgtgt tcttatttta tttttaattt
     3061 ttaatttttt tcgtagaatg taaaaaaaaa gtcattttag ctgccaccta tgactttgcc
     3121 acatagctga actgtgttta ctggaaaaat tcagaggcct aaagtttaaa ataaaattta
     3181 cttccgacgt tttaattaca aatgtttgcc acattaactt ctctgatgcc ttaaaagtgg
     3241 acttctttga agaacttctg tgctatttta tcacaggctc acaccacaat tgttaatatc
     3301 tggagatggg tgatgaacac acacacacac acacacacac acacacacac acacacacac
     3361 acacacaggc caaaagcaca aacctccagt ctgccagtca cttcttcctg ggtctgcctg
     3421 ctgctttctg ctctctttag ctcaccttgg agttagagag gcattggggg acactgctgg
     3481 ttagttcatt tttattttaa acaggacctt tttgtggtca gatccaacag cactgtctgt
     3541 acatttttaa ctggaaagac ctccttcaga cactccgcct cttagtgcca aacccaccgt
     3601 gagaccaaga aacaggactc ttttttttcc cttcacactc attgctctca cagacagcgc
     3661 aggccttgca aacagcagca gaagtcacat ttaaaacaaa aaggagggga cttacaaaac
     3721 ttagacaaac accttcacga aggaatgaca tagagcttag caagtgttca ttcgagggac
     3781 tcaatacgag taacagaacg tccccaaggg tcagtgggcc acactctggc tttgtggctg
     3841 ctgacagggc ttagctacat gaacagcctg agaagtcact ttggaactaa attgcctcga
     3901 tttattttgt gtaaggaagg gtttgaccta aaaagagctc atgtgcacat tagtccgcat
     3961 cctcatgtcc gcacccggtt tgtgttttag atcaactagt caacgccctc attgcttcat
     4021 tgtgtcaaaa accgagagct tcactaaatg gtagattttg ctgtcagaga ccctacaata
     4081 agattgtttt atctgtacat tttttcagat atttaactgt ataaaatgtt cattttacac
     4141 aatatttaat taaagtattt cttgtctgtg aatttca
//
