LOCUS       XM_039083384            4366 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 3 (Ebf3),
            transcript variant X8, mRNA.
ACCESSION   XM_039083384
VERSION     XM_039083384.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083384.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4366
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4366
                     /gene="Ebf3"
                     /note="EBF transcription factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     86 samples with support for all annotated introns"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
     CDS             37..1719
                     /gene="Ebf3"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X8"
                     /protein_id="XP_038939312.1"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTT
                     GGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ
                     FCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG
                     MPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSE
                     TSQANDQVGYSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPG
                     FLNGSSANSPYGMKQKSAFAPVVRPQASPPPSCTSANGNGLQAMSGLVVPPM"
ORIGIN      
        1 ttcggctggg agtcgcggcc gctgccagca gtgttcatgt ttgggattca ggagaatatt
       61 ccgcgcgggg ggacgaccat gaaggaggag ccgctgggca gcggcatgaa cccggtgcgc
      121 tcgtggatgc acacggcagg cgtggtggac gccaacacgg ccgcccagag cggcgtgggg
      181 ctggcgcggg cgcacttcga gaagcagcct ccttccaacc tccggaaatc caatttcttc
      241 cacttcgtgc tggcgctcta cgacaggcag gggcagccgg tggagatcga aaggaccgct
      301 tttgtggact ttgtggagaa agagaaagag ccgaataacg agaaaaccaa caacggcatt
      361 cactacaagc tgcagctact gtacagcaat ggcgtcagga cagagcaaga tctgtatgtc
      421 cgcctcatag attcaatgac caaacaggcc atcgtgtatg aaggccagga caaaaatccg
      481 gagatgtgcc gcgtgctgct gacccatgag atcatgtgca gccggtgctg tgacaagaag
      541 agttgtggca ataggaacga aacaccctca gaccctgtaa tcattgacag attctttcta
      601 aagttcttcc tcaagtgcaa tcagaactgc ttgaagaatg cgggcaaccc tcgggacatg
      661 cggaggttcc aggtcgttgt atcgacaacc gtcaacgtgg acggccacgt gctggccgtg
      721 tctgacaaca tgtttgtgca caacaattcc aaacacggga ggcgggcccg ccgcctagac
      781 ccgtcagaag gtacggcccc ttcttatctg gaaaatgcca ctccatgcat caaggccatc
      841 agccccagtg aaggctggac cacggggggc gccactgtga tcataatcgg ggacaacttc
      901 tttgacggtc tccaagttgt gttcggaact atgttggtgt ggagtgagct gataaccccc
      961 cacgccatcc gagtgcagac gccgccgcga cacatccctg gagttgttga agtgaccctc
     1021 tcctacaagt ctaagcagtt ctgcaaaggc gctcctggac gctttgtcta cactgccctt
     1081 aatgagccaa ccatagatta cggcttccag aggttgcaga aagtgatacc cagacatcca
     1141 ggtgaccccg aaaggttacc caaggaagtg ttactgaaga gggcggcaga ccttgtggaa
     1201 gccttgtatg ggatgcctca taacaaccag gagatcatcc tgaagagagc agccgacatt
     1261 gctgaggcac tgtacagcgt tccccgcaat cacaaccaga tccccacctt gggcaacact
     1321 ccagcacaca ctggcatgat gggtgtgaac tccttcagca gccagctagc cgttaatgtg
     1381 tcagagacct cacaagccaa tgaccaagtc ggctacagtc gcaatacaag cagcgtgtcc
     1441 ccgcgaggct acgtccccag cagtactccc cagcagtcca attacaacac agtcagcact
     1501 agcatgaatg gatatggaag tggcgccatg gccaatctag gggtccctgg ctcgcctgga
     1561 tttcttaatg gctcctccgc taactctccc tacggcatga aacagaagag cgctttcgcg
     1621 cccgtggtcc ggccccaagc ctcgcctcct ccttcctgca ccagcgccaa tgggaacgga
     1681 cttcaagcta tgtctgggct ggtagtcccg cccatgtgag ggactctgtt taccttcaca
     1741 gcacccagca tccaaggacg gacttcaggg gacacgtgta gtgtgctaag acgtgctgat
     1801 ggaaatgcta tctccaaaac taaaaatcag caacggttga atgctacaaa agacatttaa
     1861 agattttatt taaactgtta agaatcaaca cgcgaacaag cctactcctt catgaacaat
     1921 tccattttat tgactgaact tttctcacat cttcacattt ctcagtcctg aagattaagg
     1981 aaaacaaagc gatgcctatt ttgtataaag tttctgattc cgtcttggct gtctagtgcg
     2041 tgctatctgt gtggggagaa gcttcgtgaa tatgcaccgt tttgatgccc atgcaacact
     2101 gaggaagaaa gcctcgaaac atttttctgt actcatattt agattcacaa tggttgtgta
     2161 tctctataat gtgaaatatt tttttgtggt gaaaaaaagg gggccaagga ggtatgagcc
     2221 attaactgga acagaggagg attatgacta ggtgaatttg gggtggcagg gagggaggga
     2281 gggtttatca ttgcttaact tcatcttaat gaaatgaaac tttgtaactt attgtagtta
     2341 gaaattgtaa ctttgatatc gaatctcttg ccttcaacaa gcacactgac agagaaaaag
     2401 attatgctac tgtctgttgg ttccaatatt ctcccaccta gagcttcctg ttaaagcaag
     2461 tgcggtcagc aacatttttt caactttcac gcactgtaaa cctattgcat tcttaggcta
     2521 ctgtgaggtc tatgtttctt gtacctgaaa ttgtcctttt gacttctaga cccttcttcc
     2581 ccgatgtgtt ttgtatgtgg ttataaaatt gtagactttt gtgattttgc caaagttgta
     2641 gctaaatatt tatacacttg tcttgaattt ttttcagatc cacttaaaat atttagaaaa
     2701 atgagtttta ttccttatgt gtcttatagg ggataaaatg ctctctcacg tgacgcttcc
     2761 tttcccatga acacttgcag ttgctaaggg actttatttt gtaacatatc aattataaat
     2821 attgtattta tctttgaaat tttgtacatt gctttccctg ccttcttttt ttcacgtctg
     2881 tattggtgtt tgatctgccc agtgttgaag catagggaac gagcagacac caagagcttg
     2941 tctctttaat ccgttttgtt gaagtgaacc aatgtcctta catttcattt gtacctaaac
     3001 catttgctat cgtttagact ttccatcccc cacccctttt tttatgttga ggaaaagtca
     3061 aattcattgt ttatttttat attattttta agttatctga acaaatactt ttgaaaagaa
     3121 aagtttgttg tatagtcaaa agaaaacggt gtcagccggc cgtgacaaat tctagtaggt
     3181 tctgtgcatg tggagcggcc gtgaaggggc cacaccgtcc aggctgtgtt cttattttat
     3241 ttttaatttt taattttttt cgtagaatgt aaaaaaaaag tcattttagc tgccacctat
     3301 gactttgcca catagctgaa ctgtgtttac tggaaaaatt cagaggccta aagtttaaaa
     3361 taaaatttac ttccgacgtt ttaattacaa atgtttgcca cattaacttc tctgatgcct
     3421 taaaagtgga cttctttgaa gaacttctgt gctattttat cacaggctca caccacaatt
     3481 gttaatatct ggagatgggt gatgaacaca cacacacaca cacacacaca cacacacaca
     3541 cacacacaca cacacaggcc aaaagcacaa acctccagtc tgccagtcac ttcttcctgg
     3601 gtctgcctgc tgctttctgc tctctttagc tcaccttgga gttagagagg cattggggga
     3661 cactgctggt tagttcattt ttattttaaa caggaccttt ttgtggtcag atccaacagc
     3721 actgtctgta catttttaac tggaaagacc tccttcagac actccgcctc ttagtgccaa
     3781 acccaccgtg agaccaagaa acaggactct tttttttccc ttcacactca ttgctctcac
     3841 agacagcgca ggccttgcaa acagcagcag aagtcacatt taaaacaaaa aggaggggac
     3901 ttacaaaact tagacaaaca ccttcacgaa ggaatgacat agagcttagc aagtgttcat
     3961 tcgagggact caatacgagt aacagaacgt ccccaagggt cagtgggcca cactctggct
     4021 ttgtggctgc tgacagggct tagctacatg aacagcctga gaagtcactt tggaactaaa
     4081 ttgcctcgat ttattttgtg taaggaaggg tttgacctaa aaagagctca tgtgcacatt
     4141 agtccgcatc ctcatgtccg cacccggttt gtgttttaga tcaactagtc aacgccctca
     4201 ttgcttcatt gtgtcaaaaa ccgagagctt cactaaatgg tagattttgc tgtcagagac
     4261 cctacaataa gattgtttta tctgtacatt ttttcagata tttaactgta taaaatgttc
     4321 attttacaca atatttaatt aaagtatttc ttgtctgtga atttca
//
