LOCUS       XM_039083383            4398 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 3 (Ebf3),
            transcript variant X7, mRNA.
ACCESSION   XM_039083383
VERSION     XM_039083383.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083383.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4398
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4398
                     /gene="Ebf3"
                     /note="EBF transcription factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
     CDS             37..1737
                     /gene="Ebf3"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X7"
                     /protein_id="XP_038939311.1"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEGTAPSYLENATPCIKAISPSEGWTT
                     GGATVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ
                     FCKGAPGRFVYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYG
                     MPHNNQEIILKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSE
                     TSQANDQVVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQA
                     SPPPSCTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGKLCLGW
                     "
ORIGIN      
        1 ttcggctggg agtcgcggcc gctgccagca gtgttcatgt ttgggattca ggagaatatt
       61 ccgcgcgggg ggacgaccat gaaggaggag ccgctgggca gcggcatgaa cccggtgcgc
      121 tcgtggatgc acacggcagg cgtggtggac gccaacacgg ccgcccagag cggcgtgggg
      181 ctggcgcggg cgcacttcga gaagcagcct ccttccaacc tccggaaatc caatttcttc
      241 cacttcgtgc tggcgctcta cgacaggcag gggcagccgg tggagatcga aaggaccgct
      301 tttgtggact ttgtggagaa agagaaagag ccgaataacg agaaaaccaa caacggcatt
      361 cactacaagc tgcagctact gtacagcaat ggcgtcagga cagagcaaga tctgtatgtc
      421 cgcctcatag attcaatgac caaacaggcc atcgtgtatg aaggccagga caaaaatccg
      481 gagatgtgcc gcgtgctgct gacccatgag atcatgtgca gccggtgctg tgacaagaag
      541 agttgtggca ataggaacga aacaccctca gaccctgtaa tcattgacag attctttcta
      601 aagttcttcc tcaagtgcaa tcagaactgc ttgaagaatg cgggcaaccc tcgggacatg
      661 cggaggttcc aggtcgttgt atcgacaacc gtcaacgtgg acggccacgt gctggccgtg
      721 tctgacaaca tgtttgtgca caacaattcc aaacacggga ggcgggcccg ccgcctagac
      781 ccgtcagaag gtacggcccc ttcttatctg gaaaatgcca ctccatgcat caaggccatc
      841 agccccagtg aaggctggac cacggggggc gccactgtga tcataatcgg ggacaacttc
      901 tttgacggtc tccaagttgt gttcggaact atgttggtgt ggagtgagct gataaccccc
      961 cacgccatcc gagtgcagac gccgccgcga cacatccctg gagttgttga agtgaccctc
     1021 tcctacaagt ctaagcagtt ctgcaaaggc gctcctggac gctttgtcta cactgccctt
     1081 aatgagccaa ccatagatta cggcttccag aggttgcaga aagtgatacc cagacatcca
     1141 ggtgaccccg aaaggttacc caaggaagtg ttactgaaga gggcggcaga ccttgtggaa
     1201 gccttgtatg ggatgcctca taacaaccag gagatcatcc tgaagagagc agccgacatt
     1261 gctgaggcac tgtacagcgt tccccgcaat cacaaccaga tccccacctt gggcaacact
     1321 ccagcacaca ctggcatgat gggtgtgaac tccttcagca gccagctagc cgttaatgtg
     1381 tcagagacct cacaagccaa tgaccaagta gtgccgtcca gccccaccat ggcagcctct
     1441 tcggtcaccc tcccttcaaa ctgtagcagc acacacggca ttttctcatt ctcacctgcc
     1501 aatgtcatct ccgcagtgaa acagaagagc gctttcgcgc ccgtggtccg gccccaagcc
     1561 tcgcctcctc cttcctgcac cagcgccaat gggaacggac ttcaaggctc tctgctgggt
     1621 gccgaggacg caaccgtgga gaagacaaac tggccctttt gtgaagtcgg tggtatattc
     1681 cactttgatg aactaatgct caaaaaagga actggaaagc tatgtctggg ctggtagtcc
     1741 cgcccatgtg agggactctg tttaccttca cagcacccag catccaagga cggacttcag
     1801 gggacacgtg tagtgtgcta agacgtgctg atggaaatgc tatctccaaa actaaaaatc
     1861 agcaacggtt gaatgctaca aaagacattt aaagatttta tttaaactgt taagaatcaa
     1921 cacgcgaaca agcctactcc ttcatgaaca attccatttt attgactgaa cttttctcac
     1981 atcttcacat ttctcagtcc tgaagattaa ggaaaacaaa gcgatgccta ttttgtataa
     2041 agtttctgat tccgtcttgg ctgtctagtg cgtgctatct gtgtggggag aagcttcgtg
     2101 aatatgcacc gttttgatgc ccatgcaaca ctgaggaaga aagcctcgaa acatttttct
     2161 gtactcatat ttagattcac aatggttgtg tatctctata atgtgaaata tttttttgtg
     2221 gtgaaaaaaa gggggccaag gaggtatgag ccattaactg gaacagagga ggattatgac
     2281 taggtgaatt tggggtggca gggagggagg gagggtttat cattgcttaa cttcatctta
     2341 atgaaatgaa actttgtaac ttattgtagt tagaaattgt aactttgata tcgaatctct
     2401 tgccttcaac aagcacactg acagagaaaa agattatgct actgtctgtt ggttccaata
     2461 ttctcccacc tagagcttcc tgttaaagca agtgcggtca gcaacatttt ttcaactttc
     2521 acgcactgta aacctattgc attcttaggc tactgtgagg tctatgtttc ttgtacctga
     2581 aattgtcctt ttgacttcta gacccttctt ccccgatgtg ttttgtatgt ggttataaaa
     2641 ttgtagactt ttgtgatttt gccaaagttg tagctaaata tttatacact tgtcttgaat
     2701 ttttttcaga tccacttaaa atatttagaa aaatgagttt tattccttat gtgtcttata
     2761 ggggataaaa tgctctctca cgtgacgctt cctttcccat gaacacttgc agttgctaag
     2821 ggactttatt ttgtaacata tcaattataa atattgtatt tatctttgaa attttgtaca
     2881 ttgctttccc tgccttcttt ttttcacgtc tgtattggtg tttgatctgc ccagtgttga
     2941 agcataggga acgagcagac accaagagct tgtctcttta atccgttttg ttgaagtgaa
     3001 ccaatgtcct tacatttcat ttgtacctaa accatttgct atcgtttaga ctttccatcc
     3061 cccacccctt tttttatgtt gaggaaaagt caaattcatt gtttattttt atattatttt
     3121 taagttatct gaacaaatac ttttgaaaag aaaagtttgt tgtatagtca aaagaaaacg
     3181 gtgtcagccg gccgtgacaa attctagtag gttctgtgca tgtggagcgg ccgtgaaggg
     3241 gccacaccgt ccaggctgtg ttcttatttt atttttaatt tttaattttt ttcgtagaat
     3301 gtaaaaaaaa agtcatttta gctgccacct atgactttgc cacatagctg aactgtgttt
     3361 actggaaaaa ttcagaggcc taaagtttaa aataaaattt acttccgacg ttttaattac
     3421 aaatgtttgc cacattaact tctctgatgc cttaaaagtg gacttctttg aagaacttct
     3481 gtgctatttt atcacaggct cacaccacaa ttgttaatat ctggagatgg gtgatgaaca
     3541 cacacacaca cacacacaca cacacacaca cacacacaca cacacacagg ccaaaagcac
     3601 aaacctccag tctgccagtc acttcttcct gggtctgcct gctgctttct gctctcttta
     3661 gctcaccttg gagttagaga ggcattgggg gacactgctg gttagttcat ttttatttta
     3721 aacaggacct ttttgtggtc agatccaaca gcactgtctg tacattttta actggaaaga
     3781 cctccttcag acactccgcc tcttagtgcc aaacccaccg tgagaccaag aaacaggact
     3841 cttttttttc ccttcacact cattgctctc acagacagcg caggccttgc aaacagcagc
     3901 agaagtcaca tttaaaacaa aaaggagggg acttacaaaa cttagacaaa caccttcacg
     3961 aaggaatgac atagagctta gcaagtgttc attcgaggga ctcaatacga gtaacagaac
     4021 gtccccaagg gtcagtgggc cacactctgg ctttgtggct gctgacaggg cttagctaca
     4081 tgaacagcct gagaagtcac tttggaacta aattgcctcg atttattttg tgtaaggaag
     4141 ggtttgacct aaaaagagct catgtgcaca ttagtccgca tcctcatgtc cgcacccggt
     4201 ttgtgtttta gatcaactag tcaacgccct cattgcttca ttgtgtcaaa aaccgagagc
     4261 ttcactaaat ggtagatttt gctgtcagag accctacaat aagattgttt tatctgtaca
     4321 ttttttcaga tatttaactg tataaaatgt tcattttaca caatatttaa ttaaagtatt
     4381 tcttgtctgt gaatttca
//
