LOCUS       XM_039083361            4560 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 3 (Ebf3),
            transcript variant X3, mRNA.
ACCESSION   XM_039083361
VERSION     XM_039083361.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083361.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4560
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4560
                     /gene="Ebf3"
                     /note="EBF transcription factor 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, 1 long SRA read, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 54 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
     CDS             37..1899
                     /gene="Ebf3"
                     /codon_start=1
                     /product="transcription factor COE3 isoform X3"
                     /protein_id="XP_038939289.1"
                     /db_xref="GeneID:361668"
                     /db_xref="RGD:1304956"
                     /translation="MFGIQENIPRGGTTMKEEPLGSGMNPVRSWMHTAGVVDANTAAQ
                     SGVGLARAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVEKEKEPNNE
                     KTNNGIHYKLQLLYSNGVRTEQDLYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIM
                     CSRCCDKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTT
                     VNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGATVIIIG
                     DNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRF
                     VYTALNEPTIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEALYGMPHNNQEII
                     LKRAADIAEALYSVPRNHNQIPTLGNTPAHTGMMGVNSFSSQLAVNVSETSQANDQVG
                     YSRNTSSVSPRGYVPSSTPQQSNYNTVSTSMNGYGSGAMANLGVPGSPGFLNGSSANS
                     PYGIVPSSPTMAASSVTLPSNCSSTHGIFSFSPANVISAVKQKSAFAPVVRPQASPPP
                     SCTSANGNGLQGSLLGAEDATVEKTNWPFCEVGGIFHFDELMLKKGTGKLCLGW"
ORIGIN      
        1 ttcggctggg agtcgcggcc gctgccagca gtgttcatgt ttgggattca ggagaatatt
       61 ccgcgcgggg ggacgaccat gaaggaggag ccgctgggca gcggcatgaa cccggtgcgc
      121 tcgtggatgc acacggcagg cgtggtggac gccaacacgg ccgcccagag cggcgtgggg
      181 ctggcgcggg cgcacttcga gaagcagcct ccttccaacc tccggaaatc caatttcttc
      241 cacttcgtgc tggcgctcta cgacaggcag gggcagccgg tggagatcga aaggaccgct
      301 tttgtggact ttgtggagaa agagaaagag ccgaataacg agaaaaccaa caacggcatt
      361 cactacaagc tgcagctact gtacagcaat ggcgtcagga cagagcaaga tctgtatgtc
      421 cgcctcatag attcaatgac caaacaggcc atcgtgtatg aaggccagga caaaaatccg
      481 gagatgtgcc gcgtgctgct gacccatgag atcatgtgca gccggtgctg tgacaagaag
      541 agttgtggca ataggaacga aacaccctca gaccctgtaa tcattgacag attctttcta
      601 aagttcttcc tcaagtgcaa tcagaactgc ttgaagaatg cgggcaaccc tcgggacatg
      661 cggaggttcc aggtcgttgt atcgacaacc gtcaacgtgg acggccacgt gctggccgtg
      721 tctgacaaca tgtttgtgca caacaattcc aaacacggga ggcgggcccg ccgcctagac
      781 ccgtcagaag ccactccatg catcaaggcc atcagcccca gtgaaggctg gaccacgggg
      841 ggcgccactg tgatcataat cggggacaac ttctttgacg gtctccaagt tgtgttcgga
      901 actatgttgg tgtggagtga gctgataacc ccccacgcca tccgagtgca gacgccgccg
      961 cgacacatcc ctggagttgt tgaagtgacc ctctcctaca agtctaagca gttctgcaaa
     1021 ggcgctcctg gacgctttgt ctacactgcc cttaatgagc caaccataga ttacggcttc
     1081 cagaggttgc agaaagtgat acccagacat ccaggtgacc ccgaaaggtt acccaaggaa
     1141 gtgttactga agagggcggc agaccttgtg gaagccttgt atgggatgcc tcataacaac
     1201 caggagatca tcctgaagag agcagccgac attgctgagg cactgtacag cgttccccgc
     1261 aatcacaacc agatccccac cttgggcaac actccagcac acactggcat gatgggtgtg
     1321 aactccttca gcagccagct agccgttaat gtgtcagaga cctcacaagc caatgaccaa
     1381 gtcggctaca gtcgcaatac aagcagcgtg tccccgcgag gctacgtccc cagcagtact
     1441 ccccagcagt ccaattacaa cacagtcagc actagcatga atggatatgg aagtggcgcc
     1501 atggccaatc taggggtccc tggctcgcct ggatttctta atggctcctc cgctaactct
     1561 ccctacggca tagtgccgtc cagccccacc atggcagcct cttcggtcac cctcccttca
     1621 aactgtagca gcacacacgg cattttctca ttctcacctg ccaatgtcat ctccgcagtg
     1681 aaacagaaga gcgctttcgc gcccgtggtc cggccccaag cctcgcctcc tccttcctgc
     1741 accagcgcca atgggaacgg acttcaaggc tctctgctgg gtgccgagga cgcaaccgtg
     1801 gagaagacaa actggccctt ttgtgaagtc ggtggtatat tccactttga tgaactaatg
     1861 ctcaaaaaag gaactggaaa gctatgtctg ggctggtagt cccgcccatg tgagggactc
     1921 tgtttacctt cacagcaccc agcatccaag gacggacttc aggggacacg tgtagtgtgc
     1981 taagacgtgc tgatggaaat gctatctcca aaactaaaaa tcagcaacgg ttgaatgcta
     2041 caaaagacat ttaaagattt tatttaaact gttaagaatc aacacgcgaa caagcctact
     2101 ccttcatgaa caattccatt ttattgactg aacttttctc acatcttcac atttctcagt
     2161 cctgaagatt aaggaaaaca aagcgatgcc tattttgtat aaagtttctg attccgtctt
     2221 ggctgtctag tgcgtgctat ctgtgtgggg agaagcttcg tgaatatgca ccgttttgat
     2281 gcccatgcaa cactgaggaa gaaagcctcg aaacattttt ctgtactcat atttagattc
     2341 acaatggttg tgtatctcta taatgtgaaa tatttttttg tggtgaaaaa aagggggcca
     2401 aggaggtatg agccattaac tggaacagag gaggattatg actaggtgaa tttggggtgg
     2461 cagggaggga gggagggttt atcattgctt aacttcatct taatgaaatg aaactttgta
     2521 acttattgta gttagaaatt gtaactttga tatcgaatct cttgccttca acaagcacac
     2581 tgacagagaa aaagattatg ctactgtctg ttggttccaa tattctccca cctagagctt
     2641 cctgttaaag caagtgcggt cagcaacatt ttttcaactt tcacgcactg taaacctatt
     2701 gcattcttag gctactgtga ggtctatgtt tcttgtacct gaaattgtcc ttttgacttc
     2761 tagacccttc ttccccgatg tgttttgtat gtggttataa aattgtagac ttttgtgatt
     2821 ttgccaaagt tgtagctaaa tatttataca cttgtcttga atttttttca gatccactta
     2881 aaatatttag aaaaatgagt tttattcctt atgtgtctta taggggataa aatgctctct
     2941 cacgtgacgc ttcctttccc atgaacactt gcagttgcta agggacttta ttttgtaaca
     3001 tatcaattat aaatattgta tttatctttg aaattttgta cattgctttc cctgccttct
     3061 ttttttcacg tctgtattgg tgtttgatct gcccagtgtt gaagcatagg gaacgagcag
     3121 acaccaagag cttgtctctt taatccgttt tgttgaagtg aaccaatgtc cttacatttc
     3181 atttgtacct aaaccatttg ctatcgttta gactttccat cccccacccc tttttttatg
     3241 ttgaggaaaa gtcaaattca ttgtttattt ttatattatt tttaagttat ctgaacaaat
     3301 acttttgaaa agaaaagttt gttgtatagt caaaagaaaa cggtgtcagc cggccgtgac
     3361 aaattctagt aggttctgtg catgtggagc ggccgtgaag gggccacacc gtccaggctg
     3421 tgttcttatt ttatttttaa tttttaattt ttttcgtaga atgtaaaaaa aaagtcattt
     3481 tagctgccac ctatgacttt gccacatagc tgaactgtgt ttactggaaa aattcagagg
     3541 cctaaagttt aaaataaaat ttacttccga cgttttaatt acaaatgttt gccacattaa
     3601 cttctctgat gccttaaaag tggacttctt tgaagaactt ctgtgctatt ttatcacagg
     3661 ctcacaccac aattgttaat atctggagat gggtgatgaa cacacacaca cacacacaca
     3721 cacacacaca cacacacaca cacacacaca ggccaaaagc acaaacctcc agtctgccag
     3781 tcacttcttc ctgggtctgc ctgctgcttt ctgctctctt tagctcacct tggagttaga
     3841 gaggcattgg gggacactgc tggttagttc atttttattt taaacaggac ctttttgtgg
     3901 tcagatccaa cagcactgtc tgtacatttt taactggaaa gacctccttc agacactccg
     3961 cctcttagtg ccaaacccac cgtgagacca agaaacagga ctcttttttt tcccttcaca
     4021 ctcattgctc tcacagacag cgcaggcctt gcaaacagca gcagaagtca catttaaaac
     4081 aaaaaggagg ggacttacaa aacttagaca aacaccttca cgaaggaatg acatagagct
     4141 tagcaagtgt tcattcgagg gactcaatac gagtaacaga acgtccccaa gggtcagtgg
     4201 gccacactct ggctttgtgg ctgctgacag ggcttagcta catgaacagc ctgagaagtc
     4261 actttggaac taaattgcct cgatttattt tgtgtaagga agggtttgac ctaaaaagag
     4321 ctcatgtgca cattagtccg catcctcatg tccgcacccg gtttgtgttt tagatcaact
     4381 agtcaacgcc ctcattgctt cattgtgtca aaaaccgaga gcttcactaa atggtagatt
     4441 ttgctgtcag agaccctaca ataagattgt tttatctgta cattttttca gatatttaac
     4501 tgtataaaat gttcatttta cacaatattt aattaaagta tttcttgtct gtgaatttca
//
