LOCUS       XM_006252133            2678 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 2 (Ebf2),
            transcript variant X1, mRNA.
ACCESSION   XM_006252133
VERSION     XM_006252133.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006252133.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006252133.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2678
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2678
                     /gene="Ebf2"
                     /note="EBF transcription factor 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 6 ESTs, 20 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     20 samples with support for all annotated introns"
                     /db_xref="GeneID:361060"
                     /db_xref="RGD:1310805"
     CDS             402..2129
                     /gene="Ebf2"
                     /codon_start=1
                     /product="transcription factor COE2 isoform X1"
                     /protein_id="XP_006252195.1"
                     /db_xref="GeneID:361060"
                     /db_xref="RGD:1310805"
                     /translation="MFGIQDTLGRGPVLKEKSLGAEMDSVRSWVRNVGVVDANVAAQS
                     GVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEK
                     TNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMC
                     SRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTV
                     NVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGD
                     NFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFI
                     YTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIIL
                     KRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYI
                     RNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPY
                     GIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRA
                     MTGLVVPPM"
ORIGIN      
        1 tttctatatc ggaacagtgg ggaggagcag ggagggggga caaggaggaa ggggagagat
       61 caggcagcta tctatctcct cctgtttttc ccagaacagg tgatgcttct aaattgtggc
      121 cactttctgg agaacgctct gcagctggaa ggatgcgggc gacctagagt ggaagccccg
      181 aggcgacaga tctgaagcta ccgaggataa aaacgcaaag tttgcattgt gcgtggagga
      241 aagggctggc tatttctttc caggagggcc ccaaacttcg gccctctgcc gcttttctcg
      301 gattgctttg gagaacacca tttgctggca gcgctggaaa gtcgggacgg tgttgtcgta
      361 aagtcacttt taaggcgaca gtagaggact agacttttta aatgtttggg attcaagata
      421 cgctaggaag aggaccagtt ctgaaagaaa agtcgctggg tgccgagatg gattcggtca
      481 ggtcctgggt ccggaatgtc ggcgtggtgg atgccaatgt cgcggctcag agtggcgttg
      541 ccctgtctcg ggcccacttt gaaaagcaac ctccttctaa cttgaggaaa tccaacttct
      601 tccattttgt cctggcgctc tacgacaggc agggacagcc ggtggagatt gagcgcacag
      661 ccttcgtgga ctttgtggag aatgacaaag agcaaggcaa cgagaaaacc aacaatggca
      721 ctcactacaa gttacagctc ctttacagca atggtgtccg cacagagcag gacctctatg
      781 tcaggctcat agactcagtc acaaaacagc ctattgccta tgagggacag aataagaatc
      841 cagaaatgtg cagagttctg ctgacacacg aggtgatgtg cagccgatgc tgcgagaaaa
      901 agagctgtgg gaaccggaat gagaccccgt cagaccccgt catcatcgac agattctttt
      961 taaaattttt cctgaagtgc aatcagaatt gtttgaaaac agcaggaaac ccaagggaca
     1021 tgagacggtt tcaggtcgtg ttgtctacaa cggtcaatgt ggatggacat gtgctggctg
     1081 tttctgacaa catgtttgtt cataacaact ctaagcatgg aaggagagcg agaaggcttg
     1141 acccatcaga agctacaccc tgcatcaaag ccatcagtcc aagtgaaggc tggaccacgg
     1201 gaggggccat ggtcatcatc attggtgaca acttttttga tggtctccaa gttgtatttg
     1261 gtaccatgct cgtatggagt gagcttataa cccctcatgc catcagagta cagacccctc
     1321 cccggcatat ccctggagtt gtggaagtga cactatctta taaatccaaa cagttctgca
     1381 aaggagcccc aggcaggttc atctacacag ccttaaatga acccaccata gactatggct
     1441 tccaaagact gcagaaagtc atcccaaggc acccaggaga ccctgagagg ctagctaagg
     1501 aaatgctatt gaaaagagct gcagacctgg tggaagccct ctacggcaca ccccacaata
     1561 accaggacat cattttaaag cgtgctgcag acattgcaga agccctgtac agtgtccccc
     1621 ggaaccccag ccagattcca gctctctcca gctccccagc tcatagcggc atgatgggta
     1681 tcaactctta cggcagccag ctgggggtca gcatttcaga gtctacacaa ggaaataacc
     1741 aaggatacat ccgcaacaca agcagcatct cccctcgggg atactcctcc agctccacgc
     1801 cccagcagtc taattacagc acctccagta acagcatgaa tggctacagc aacgttccta
     1861 tggccaacct gggtgtgcca ggatcaccgg gttttctgaa cggctcacct acaggctccc
     1921 catatggaat catgtcttca agccccaccg tgggatcctc cagcacatcc tccatcctcc
     1981 cgttctcctc ttcagttttt cctgctgtca aacagaagag tgcctttgcc cctgtcatca
     2041 ggccccaagg ctccccttcg cctgcctgct ccagtggcaa tgggaatgga ttcagagcca
     2101 tgacgggact tgttgtaccc ccgatgtaaa gtagaggaag aactgctttc tcatagcaca
     2161 aaactactta ttccaatgga ccaattatga aggaagcact ctgagcttgt tggggagact
     2221 tgcaccccca agcggccatg ttggacagat ttgggaaggc agagagccgc catcttggtc
     2281 tcgtgttcct catgaagcat tgacagtcac tacacaaact gacccttttg gagacaagaa
     2341 cagagaaatg tcattctctg acgtggtcag tgctaagagc agaaacgcaa ttctttgtta
     2401 tgaacattac gaaaaccacc ttcctatgtt tgtaaaatat ttaagaaaaa cattggcaaa
     2461 cattcatgct taatattttg gatactattt gtttttcttt gtaggaaaaa agttgaaagt
     2521 ttctattttc tatgaatcct ttcagatacc aatttagttt atgcagaaaa aagttgaaca
     2581 aaacagggta ccaacatgga agactttctt aaaatgaaac ctgaattgaa tgaggaaatg
     2641 ttgtgtgtgt gtttgcttat actttaagct ctttaaaa
//
