LOCUS       XM_017596962            3806 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EBF transcription factor 1 (Ebf1),
            transcript variant X8, mRNA.
ACCESSION   XM_017596962
VERSION     XM_017596962.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017596962.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017596962.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3806
                     /gene="Ebf1"
                     /gene_synonym="Ebf; Olf1"
                     /note="EBF transcription factor 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 27 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     53 samples with support for all annotated introns"
                     /db_xref="GeneID:116543"
                     /db_xref="RGD:620953"
     CDS             142..1521
                     /gene="Ebf1"
                     /gene_synonym="Ebf; Olf1"
                     /codon_start=1
                     /product="transcription factor COE1 isoform X8"
                     /protein_id="XP_017452451.1"
                     /db_xref="GeneID:116543"
                     /db_xref="RGD:620953"
                     /translation="MTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETP
                     SDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVH
                     NNSKHGRRARRLDPSEGTPSYLEHAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQ
                     VIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEP
                     TIDYGFQRLQKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIA
                     EALYSVPRNHNQLPALANTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVS
                     PHGYVPSTTPQQTNYNSVTTSMNGYGSAAMSNLGGSPTFLNGSAANSPYAIVPSSPTM
                     ASSTSLPSNCSSSSGIFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQA
                     ISGMIVPPM"
ORIGIN      
        1 gccagcaccc tggggctcag ggtcagggca gggggctcac ggagctccag gtggacgaaa
       61 gccccccagc gaagctcagc cgtcagccac cctccaggga taaggaccga acaggatttc
      121 tacgtgcgcc tcatcgactc catgacaaaa caagccatag tgtatgaagg ccaagacaag
      181 aacccggaaa tgtgccgagt actgctcaca cacgagatca tgtgcagccg ctgttgtgac
      241 aagaaaagct gtggcaaccg aaatgagact ccctcagatc cagtgataat tgacagattc
      301 ttcctgaagt ttttccttaa gtgtaaccaa aattgcctaa agaatgcggg gaacccacgt
      361 gacatgcgga gattccaggt cgtggtgtct accacagtca acgtggatgg ccatgtcctg
      421 gcagtctctg ataacatgtt tgtccacaat aactccaaac acgggcggag ggctaggagg
      481 cttgacccct cggaaggtac gccctcttat ctggaacatg cagctactcc ctgtatcaaa
      541 gccatcagcc cgagtgaagg atggacgacg ggaggcgcga ctgtgatcat cataggggac
      601 aatttctttg atgggttaca ggtcatattc ggtaccatgc tggtctggag tgagttgata
      661 actcctcatg ccatccgtgt tcagacacct cctcggcaca tccctggtgt tgtggaagtc
      721 acattgtcct acaagtccaa gcagttctgc aaagggacac caggcagatt catctataca
      781 gcactcaatg aacccaccat cgactatggt ttccagaggt tacagaaggt cattccccgg
      841 catcctggtg acccagagcg tttgccaaag gaagtgatcc ttaaaagggc tgcagatctg
      901 gttgaagccc tgtatgggat gccccacaac aaccaggaga ttatcctgaa gagagctgcc
      961 gacattgctg aggctctgta cagtgtccct cgaaaccaca accagctccc ggccctcgct
     1021 aacacttcgg tccacgcagg gatgatgggc gtgaactcct tcagtggaca actggctgtg
     1081 aatgtctctg aggcatcaca agccaccaat caaggtttca cccgcaactc aagcagtgtg
     1141 tcaccacatg gatatgtgcc tagcaccacc ccacagcaga ccaactataa ctctgtcacc
     1201 acaagcatga acggctacgg ctctgccgcc atgtccaatt tgggcggctc cccaaccttc
     1261 ctcaatggct cagctgccaa ctcaccctac gccattgtgc catccagccc caccatggcc
     1321 tcatctacaa gcctcccctc caactgcagc agctcctcgg gcatcttctc cttctcacca
     1381 gccaacatgg tctctgctgt gaaacagaag agtgctttcg caccagttgt cagaccccag
     1441 acctccccgc ctcccacctg caccagcacc aacgggaaca gcctgcaagc gatttctggc
     1501 atgattgtcc ctcccatgtg aaagaattgc cttgaagaat tttattaatg aagaggttgg
     1561 atcctgctac gaaagtaatc tgacatgagt cccagagtgg aacttttaac tcaggccttt
     1621 ttaagaggaa atcacacaat aactgcagat ttttaaacaa agtcaccgac cttgcaaata
     1681 ctgagattgg aaaggggacc tgccagagcg gggtgttgga tagagtcgga ctccccgagt
     1741 gtctggggga tatatttatt ctgtattgat aaaaaaaaga acaagcccac cttttctttt
     1801 tttctttctc ttttctttct ttaagcttaa ctctgcaacc atttgtcttt tgtaaaccat
     1861 taagctacac acaagggcca ctctaaataa gactccatgt tttaatttat gatgttttta
     1921 aagctatgta aggggagaat gaagtggtga tatttacaaa aaaaaaagaa aaaaaagaaa
     1981 aaagaaaaaa agctaaaaag gaaaaaaaaa agaaaaacag ggaaaaataa attaaaaaaa
     2041 aaaaaaagct cgtaagggac agaataggag aatgccagtt agatttttta gaaaactaag
     2101 ggtcggcttc tgcgccttaa agcatatcag tggtaattag ctcagacagt gcatttccaa
     2161 tatctaactt aacacgccat cccttagcag tgcaagcttc tctctctctt ttgtatggtt
     2221 gtcttaagta actgtgtaaa taggtgtagc ctggaaagtt accaagcaac atacatgatc
     2281 atattttccc ttgtactcag aaaatccagt gcctctagac agattgttta aaaacgaaca
     2341 aaagaacaaa aaacaaaaaa acaaaacaaa acaaaaaccc tgcatcttta aacccgatct
     2401 tattctttta cttaacgcca tcttctccca aagccagcgg cctctgaagg tggagcggca
     2461 ggtgtaccga gcgagactct cctaaacttc acgggacagg gtccaggcac agaatcccac
     2521 atacgccctc cagtttacca agccaaaatc ttgctcactc caccatcaag agaaccaagc
     2581 ttactcatgc tggagtccta aatattaact ctgtatcggg gcccaaaaac ccaaacaaag
     2641 caaaccgaca aaggtatgct attccgggct cccaaatcgc acaggggtct gtaccagcaa
     2701 gaccccctca tgattggaaa gttctacatt cagtcaacag gtaaaatgct ttggagttca
     2761 gtgtgaaagg aaactgggag agaggaaggg aaggttgagg cttcaaactc agctttccat
     2821 gggaaagttt gctttcaact gggaagtgtt cttaaagaat ccatagcaaa gatccagcca
     2881 gcaaggctct gagggggcgt gttcctgctg acctttgccc ttctgtttct gtacgtagtt
     2941 ataaatactg tagatttctt ttgtgatttt ttttttgcca aagttgttgt tttatttata
     3001 cattttaatg tcttaaggtg attttcgatc tcacacacaa aggattttgc cgcatatttt
     3061 gcaaataaat aaaaagcgcg ctacctttag cttgcacata cttgcaaagt taattcaaag
     3121 gctttctgtt tgtttgtttt aatggggatt ttgtaaaata tccatataaa taatgtattt
     3181 atctctggaa tttgtacatt gcttttctct ccttcctcca accccccccc agccccagtt
     3241 tattttgtgt gtgtgtttgc tttgtgaaca gtgcgcgcat atagtttcgt cgcctatggt
     3301 tgtattaact gtttcaatgt gatttttaaa caattcattt ataggtattt ttagtattgt
     3361 tttaaaccat gcttcatttt tttttatttc cacccaaaag ccattgtcta tttttgtatt
     3421 atttgtaagt taagaagttt tttccaatat atggcaaaaa aaattagtag catattattc
     3481 ttgtagtatt tagttctgta gatttaaaaa taatgtatcc tttgctttgg aagcatacaa
     3541 aaaatgctgt tttactctat taatatgcat ggaatctctc cctttggagt gacgcatttt
     3601 gtgcattaaa tttgggggag aaacttcata gagatcaatg gacatacttt ctttcttaag
     3661 tctgcttgta tattctctgt ctttcacata aatataaacc agcagattgg atgccttaac
     3721 aatgcaagtc acacccattt cacctgtaca ttgtactgtg cacccccacc gtcagccatc
     3781 actcacattc taagaaaaaa aaaaaa
//
