LOCUS       XM_039093981            4345 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus DAZ interacting zinc finger protein 1
            (Dzip1), transcript variant X1, mRNA.
ACCESSION   XM_039093981
VERSION     XM_039093981.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093981.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4345
                     /gene="Dzip1"
                     /note="DAZ interacting zinc finger protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 33 ESTs, 5 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     145 samples with support for all annotated introns"
                     /db_xref="GeneID:364475"
                     /db_xref="RGD:1307701"
     CDS             872..3418
                     /gene="Dzip1"
                     /codon_start=1
                     /product="cilium assembly protein DZIP1 isoform X1"
                     /protein_id="XP_038949909.1"
                     /db_xref="GeneID:364475"
                     /db_xref="RGD:1307701"
                     /translation="MPFQKHVYYPLANSPEGPDASAAGAAPMAFVPPSAASGPLPFFQ
                     FRPRLESVDWRRLSAIDVDKVAGAVDVLTLQENIMNITFCKLEDEKCPHCQSGVDPVL
                     LKLIRLAQLTIEYLMHSQEFLTSQLNLVEERLRLSLMDYEQSKQLLTKQAGEIKLLKE
                     ECKRRKKMLSTQQLMIEAKASYYQCHLCDKAFMNQAFLQSHIQRRHTEDSHLEYNTKA
                     QTDRLQKEIDMLKEQLQLTRTQLESAQHSHAVRFSKDYEMQKIKEEDFLKLFDRWKEE
                     EKEKLLEEMEKVKEMFMREFKKLTSKNSALEYQLLEIQRSNIQIKSNIGTLRDAHELR
                     EDHLPYPQDFQNMLQLLDSQASKWSDRFQVLNEEHSKEKGQLLSHIEKLRSSMMKDLS
                     ADNVFYKRRVEELGQKLQEQNEVIITQKQQIREFASKPYHSVNEMKGTPLTRQTLEPK
                     SAALTTPMNASATQNLDGTSNLTMVHEQVFSSHILEPIAELSSEEEKGRENEQKTNKK
                     THVRKTPNTNPTPKELRTNLEKELGNKLRSFGISENIQGIPCEILNRSLKAMQVARHD
                     LAKQVPDIQQIRENLEHQLICKMGERASHSSDRRHAPPMASFPPEEVPKATQLPPRSR
                     PLVRQKTMFTDKASAPKLKKNTKESHFLRRFPATKTPPFSSEEEPEEEGFMRAHRSPD
                     VLPTQPPKNKRSNFGRRAVRSDTDWTEGSEMDDSDFSPKLTGTSIKIQTEKVESMPFP
                     QGNRNKPVPGTNSADAAIKKEEFRELKCTDADDEDWDVSSLEEEKSLGSKGKREPPPS
                     KRDLSCSQVQRAWGPVNPREFKEEGLQEKESSTRKSSLVTVADWSDALDV"
ORIGIN      
        1 agaggggagg gggcgggagg ggggtggggc agccttagcc acccacggcc cggagcctgg
       61 gaggaccagg agcgacgccg ggctaccggc ctcgtcacaa cttgcccgga ccagacacgc
      121 tttatcttgc accctggaag aaggagcccg cctgcctctc cctgctctgt tgctcctcgg
      181 cctccgcgag ccccgcctct gcgccagcag caatcccagg atctggatcc cccgtgaatc
      241 cccgtgtctt gcagcgcccg gctttcgccc aggagcgcgc aactggggat ccggctcctg
      301 aggctttgtc ttttcgggtt caccaggcca gcggtgctgg aaatccagcg gtgagcaaca
      361 cacctctcct gttcccgctg atccagccag cccggtggat ggagcccaga atccacaaac
      421 ctgccaggaa agaaaaaaat tttcctgatg gttggtccaa gcagggcctc cctggtggat
      481 tgaggaatgc ctggcttttc ctcagctcct tgatcccgga agtaaccaca ggcagcatcc
      541 agaagacccc tacaatgaga ggcctggggt ctgcaagttg ctgctagaat tttttaaaga
      601 atgcagcacc aatacagatt ttaaggtccc tgggcgcatg ctgaacgcgc gtgggcggat
      661 acgccctgca ctccaggtcg gggcagggcg ctgccatagc aacgtcctgg acgcccagat
      721 cttaggccgc cgccgccgca gcagcggggg tcagggacat ctcaggctca cgagaggagt
      781 ggcggcggcg gccccgaggc ggccagggtc agggacacga cactgctcct cccctccacc
      841 gcaagcctag gaggcgaact ggcttgcaag catgcccttc cagaagcacg tctactaccc
      901 tctggccaac agccccgagg ggcccgacgc ctctgccgca ggcgcggccc ccatggcctt
      961 tgtccccccc agcgcggcct ccggccccct gcccttcttt cagtttcggc cgcgactgga
     1021 gagcgtggac tggaggcggc tgagcgccat cgacgtggac aaggttgccg gcgctgtgga
     1081 cgtcctgacc ctgcaggaga acatcatgaa tatcaccttc tgcaagctgg aggacgagaa
     1141 gtgcccgcac tgccagtccg gggtagaccc agtgctgctg aagctgatcc gcctggcgca
     1201 gctcaccatc gaatacctga tgcactcgca ggagttcctc acctcgcagc taaacctggt
     1261 ggaggagagg ctgcgcctga gcctgatgga ctatgagcag agcaagcagc tgctcaccaa
     1321 gcaggctggc gagatcaagc tgcttaagga ggaatgtaaa cgcaggaaga agatgctgtc
     1381 cacgcagcag ctgatgatag aggccaaagc tagctattac cagtgccatc tctgtgacaa
     1441 ggcctttatg aaccaagcat tcctacagag ccacattcag cgccgccaca ctgaagattc
     1501 tcaccttgag tacaatacaa aggcccagac cgaccggctc cagaaggaga tcgacatgtt
     1561 gaaggaacag ctgcagctca ccaggactca gctggagtcc gcccagcact ctcatgcagt
     1621 ccggttctcc aaggactatg aaatgcagaa aataaaggaa gaggactttc tgaaactgtt
     1681 tgaccgatgg aaagaggaag agaaggagaa gttactggag gaaatggaga aggtcaagga
     1741 gatgtttatg agggaattta aaaagttaac gtctaagaat tcagcattag aatatcagtt
     1801 gctagaaata cagaggtcta acatccagat caagtccaac ataggcacct taagagacgc
     1861 tcacgagctc cgagaagacc atcttccgta tcctcaggat tttcaaaaca tgcttcagct
     1921 cctcgacagc caggcaagca agtggtcaga tcgatttcaa gttctcaacg aagagcacag
     1981 caaagagaag ggtcagctcc tgtcacacat cgagaagctt cgaagctcaa tgatgaaaga
     2041 tttaagcgca gataacgttt tctacaagag gcgggtagaa gagttaggcc agaaactgca
     2101 ggagcagaac gaggtgatca tcactcagaa gcagcagatt agagaatttg ccagcaaacc
     2161 gtaccacagt gtcaacgaga tgaaagggac tcctttaacc cgacaaacgc tggaacctaa
     2221 atcagctgca ctgaccacac ccatgaatgc ctcagccacg cagaatctgg atggtacatc
     2281 caacctgacc atggtacatg agcaagtgtt ctcttcacac atactggaac caatagcaga
     2341 actttcttca gaggaggaaa aagggcgaga aaatgagcag aaaacaaata aaaagacgca
     2401 tgtaaggaaa acgccaaata ccaacccgac ccctaaggag ctgaggacca acctggagaa
     2461 ggagctgggg aataaactga gaagcttcgg gatcagcgag aatatccaag gtattccatg
     2521 cgagatcttg aatagatcgc ttaaagccat gcaagtagcc agacacgacc tagcaaaaca
     2581 ggtgcccgac attcagcaaa ttcgagaaaa cctggagcat cagctgatct gtaaaatggg
     2641 agagagagca tcacactctt cagataggcg ccatgcccct cccatggcct cctttccacc
     2701 cgaagaagta cccaaagcaa cccagcttcc ccccagaagc agaccgttgg tcaggcagaa
     2761 aactatgttc actgataaag cgtccgcccc aaaactcaag aaaaatacca aagaaagtca
     2821 ttttctcaga aggtttccag ctaccaagac gcctcccttc agctcagaag aggagccgga
     2881 agaagagggc tttatgcggg cacaccgctc cccagacgta ctccccacac agccacctaa
     2941 gaacaagagg agtaactttg gaaggagagc tgtcagaagt gacacggact ggacggaggg
     3001 aagtgaaatg gatgactcgg acttctctcc taagctgaca ggaacctcca ttaagattca
     3061 gactgagaaa gttgagagca tgccttttcc ccaaggcaac aggaataaac cagttcctgg
     3121 gacgaactct gctgacgcgg ctatcaaaaa ggaagagttt cgagagctaa agtgcacaga
     3181 tgctgatgac gaggactggg atgtatcatc cttagaggaa gaaaaatctc tgggcagtaa
     3241 agggaagagg gagcccccac cctcaaagcg ggatctcagc tgcagccagg tgcagagggc
     3301 ctggggcccc gtgaaccctc gggaattcaa ggaagaagga cttcaagaaa aggaatcaag
     3361 cacacgcaag agcagcttag tcactgtggc tgactggagt gatgctttgg atgtctaacc
     3421 acaatctccc acatcagagg actgtccaga agccagcatc attgcaacca acagcccata
     3481 ggatcccaat gttccttagt gtttcccacc atagcaagga agcccattca aaacaagggt
     3541 gtccctgatg gcagtatcaa gaacaaactg tcaagctatc cactgtgtaa aaaacaacgt
     3601 atcctttaag tcataaaaac tcttttcttc agtacagtac tctttagtgt taaatgtatt
     3661 ttatttcaac taacttaagt cttttttctt caattgattg atggcaggct ttggtttgaa
     3721 ttgttatagc tctttaaatg tatatataca tatctatata ctgtcccact gatagtgctt
     3781 atgttaggaa attctgtgag gtctcttcaa actgaattag taactcagtg atctcatgaa
     3841 tggtaaccat tagccaggcc catggtaaat acatttcctt aaagtacctt tgaacgccct
     3901 gggctctgag tccctgtcag cacgttgtta ctaacgggtt ctttcctgcc gtgtaatctt
     3961 cctcttggat gtctcatgat taatgtgcaa ctgtcgtcaa tgccaatcga ttcttgtgag
     4021 acggtcacta gaaaaagatg agccgttact aacacccacg agtcgttttc ctgtctccag
     4081 tccccaaccc atagtataaa atacctcaga actagcttat atccttcaat aatgatcttg
     4141 gcagtgatca gaaagtttat atagaaacca tttgtttccc ttttcttttt aactcccccc
     4201 cctttttttt gaaaatattt tttatactat gtggtactgt taggactact atctcaaaga
     4261 aaaaaagcga cattttaatg gcttgttgat ttggagtctc ctgtcgtccg ccgaccgtgc
     4321 cagtaaagat ctccgtcaca ccgtg
//
