LOCUS       XM_039106611            2701 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus double zinc ribbon and ankyrin repeat
            domains 1 (Dzank1), transcript variant X1, mRNA.
ACCESSION   XM_039106611
VERSION     XM_039106611.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427722.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2701
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2701
                     /gene="Dzank1"
                     /note="double zinc ribbon and ankyrin repeat domains 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     92 samples with support for all annotated introns"
                     /db_xref="GeneID:311486"
                     /db_xref="RGD:1311344"
     CDS             144..2417
                     /gene="Dzank1"
                     /codon_start=1
                     /product="double zinc ribbon and ankyrin repeat-containing
                     protein 1 isoform X1"
                     /protein_id="XP_038962539.1"
                     /db_xref="GeneID:311486"
                     /db_xref="RGD:1311344"
                     /translation="MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIY
                     YTLDGSKPDFLKKVGSGENNTFKYIKPIALPDGKIQVKAVAVSKDCRQSGIVTKVFQV
                     DYEPPKMVSSEDHGEDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNLRRLADL
                     KVGERADPKTLKDLRFSESPLEIPAYHEGASARLPTHQAQSPGFAHITGQKSLTSTEV
                     MRIQRETDFLKCAHCLASRPSDPFARFCQECGAPVPPIFGYRLPPPEGAQMGLCAECG
                     SMVPMNTPICVVCEAPLAPQLRPQASLYLKERVICRTCGTGNPAHLRYCVTCEGTLPP
                     TQEQWLCNGDEVPRLPTRNGETISCSRCGCQNLWEASFCDWCGAMLGISASHSVCPKC
                     GASNHLTARFCGSCGIYVKSITRFRMNNSLAIVAGGPRPFPEPRSAWQSLNVPLPTPA
                     TGSKKDMGTQTSGLFYPSGKLLAKKELEAASHRQRQEKMSDHRPVLTAVSPGRGYWRK
                     QLDHISAHLRSYAQNNPEFRALIAEPRMGKLISATVHEDGYEVSIRLNYIQVSNKNLY
                     LNKSMNLSDHFLSSVTEGGNGLYGSRSSLVSAYSQSISDTPESIKKMKNPKAKSFLAN
                     PEPLTPENRLLLEEVGSTGKGRLSVLEQLLDEGADPNCCDSQGRPAVIVAVVNKHFEA
                     IPVLAQRGADIDQQWGPFGNTALHEATLLGLEGRESVATLLGCNANTQKKNTRGQTAY
                     DIALEMGDDLTSALFAD"
ORIGIN      
        1 cgcggtccgc agcgtctgtg gtaacgcaag ctgctgcgga ggagcagtcg tgaggcggtg
       61 agagtctaga cacccggttg gcggcagtgg acgtgcgtcg ggggtcctta tctctgtcct
      121 tgaggctgga ggaaggagag aacatgactg ctggttcagt gtgtgcccct cagatcatac
      181 cactgcgagt gcctcagcct ggaaaagcta accatgaaat tgataccaat actcttttgg
      241 aaatgaaatc cgacacccca gacgtcaaca tatattacac cctggatggc agcaaacctg
      301 acttcctaaa gaaagttggt tctggtgaaa ataatacatt taaatatata aaacctattg
      361 ctctgcctga tggaaaaatc caagttaaag ctgtcgctgt ctctaaagac tgcagacaga
      421 gtgggattgt gacaaaggtg tttcaggtgg actatgaacc accgaagatg gtgtcttctg
      481 aggaccatgg agaagatgct ctcaaggggt tttcaaagca ggaattaaaa aatgggtttg
      541 tcggaccaaa attaaggaag aagtataaga atgctgaaaa taaatcaact tggaacgtta
      601 accttagacg gcttgcagac ctcaaggtgg gagaaagagc agaccctaaa actctgaaag
      661 atcttcgctt ctcagagagt ccactggaga tcccagccta ccatgaggga gcaagtgctc
      721 gactgcctac tcaccaggcc cagtcccctg gatttgcaca cataactggc cagaagagtc
      781 tgacgagcac tgaggtcatg aggatccaga gggagacaga cttcctgaag tgtgcccact
      841 gtctggcttc ccgtccatct gatccttttg ctcgcttctg tcaagaatgt ggtgctcctg
      901 tcccacccat ttttggctat cgtcttccgc ccccagaagg ggctcagatg ggcctgtgtg
      961 cagagtgtgg cagtatggtt cccatgaaca cccccatctg tgtggtgtgt gaagctcctc
     1021 ttgctccaca gctgcggcca caggccagcc tctacttgaa ggagagggtg atctgtcgca
     1081 cctgtggcac tgggaatcct gctcatctga ggtactgtgt cacctgtgag gggaccctgc
     1141 ctccaacaca agagcagtgg ctgtgcaatg gagatgaagt ccctcgtctg cccactcgaa
     1201 atggggagac catttcctgc tccagatgtg gctgccagaa cctctgggaa gcatccttct
     1261 gtgactggtg tggagccatg cttggcattt ctgctagcca ctctgtctgc ccaaaatgtg
     1321 gggccagcaa tcatctgact gcccgattct gtggctcctg tggtatttac gtgaagtcta
     1381 taacaagatt tagaatgaac aacagcttgg ccatagtcgc tggggggcct cgcccatttc
     1441 ctgagccccg atctgcctgg cagtccctaa atgtcccttt gcccacacct gccactgggt
     1501 ctaagaagga catgggcaca cagacctctg gcctgttcta cccatctggc aagctcctgg
     1561 caaagaagga actggaggcg gcttctcaca ggcagaggca ggagaagatg agtgaccaca
     1621 ggccggtcct cacggctgtc agcccgggaa gaggctactg gagaaaacag ttggatcaca
     1681 tctctgctca cctcaggtcc tatgctcaga acaaccctga attccgggcc ttgattgcag
     1741 aacccaggat gggaaagctc atctctgcta ctgtccacga agatggctat gaagttagca
     1801 tcaggctgaa ctatattcaa gtctcaaaca agaacctgta cctcaacaag tcgatgaatc
     1861 ttagtgacca ctttctgagc agtgtcaccg aaggtgggaa tgggctgtat ggcagcaggt
     1921 ccagcttggt cagtgcctac agccagagca tctcagacac ccccgaaagt atcaagaaaa
     1981 tgaagaatcc caaggccaaa agcttccttg caaacccaga gccactcaca cctgaaaaca
     2041 gactcctgct ggaggaagtt gggtccacag ggaaaggaag actgtctgtg ctggaacagc
     2101 tgctagatga aggagcagac cctaactgct gtgatagtca aggtcgacct gctgttattg
     2161 tggctgttgt gaataaacac tttgaagcca ttccagttct cgctcagaga ggagcagaca
     2221 tcgaccagca gtggggaccg ttcggaaata cagctcttca cgaagcaact ctacttggcc
     2281 tggaaggaag ggagagcgtc gccactttac tggggtgcaa tgcaaacacc caaaagaaga
     2341 acacaagagg ccagacagca tatgacatcg ccctggagat gggggatgac ctcacctctg
     2401 cgctctttgc cgactaagtt tgctcaaggt ctggaggacc aactttctcc acctgggaac
     2461 cacatcctag ctgacagtta gatctgaggt actcaggagg ctgcaaagag actacccagc
     2521 tatagccagt cttacttttg gaatgtgtat ttaagtgtaa gaattagggt ggaaaggaac
     2581 tcctaagact gtgtgtgtgt gtgtgtgtct gtgtgtgtgt gtgtgtgtgt gtgtgtgtct
     2641 gtgtgtgtgt gtgtctgtgt atatgtatgt gtgtctgtgt gtgtgtctgt gtgtctgtgt
     2701 g
//
