LOCUS       XM_039108822            2074 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus dual specificity tyrosine
            phosphorylation regulated kinase 4 (Dyrk4), transcript variant X1,
            mRNA.
ACCESSION   XM_039108822
VERSION     XM_039108822.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427230.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2074
                     /gene="Dyrk4"
                     /note="dual specificity tyrosine phosphorylation regulated
                     kinase 4; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 3 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:312721"
                     /db_xref="RGD:1306800"
     CDS             51..2000
                     /gene="Dyrk4"
                     /codon_start=1
                     /product="dual specificity
                     tyrosine-phosphorylation-regulated kinase 4 isoform X1"
                     /protein_id="XP_038964750.1"
                     /db_xref="GeneID:312721"
                     /db_xref="RGD:1306800"
                     /translation="MQLLPLPALTWTETKMDTNKARKRSLTTFPVLKARKKQSFTSVK
                     GPTLPPDIYMVESKPLVQLQKPSSKTKKLRSNRCSQKNPSTSSSAFPFVDTKGKKNTV
                     NFPHIGNKTLPKGSTLYQENQIHNQLLSSELKTSEIPFSFSTKAQDTKVQDTKLHPEL
                     PKRHKVPLTAAEALKFFKNQLSPYEQSEILGYSELWFLGLDAKKLNVVPEKFSKTSFD
                     DEHGSYVKVLHDHIAYRYEVLDMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQ
                     ALVELKILEALRRKDKDNTHNVVHMKDFFYFRNHLCITFELLGINLYELMKNNSFQGF
                     SLSIVRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYHRGQVTVKVIDFGSSCYEHQK
                     VYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFPGENEVEQLACIME
                     VLGLPPTHLIQTATRRQIFFDSKGLPKNITNNRGEKRYPNSKDLPMVVKTYDSSFLDF
                     LRRCLVWEPSLRMTPDQALKHAWIHEPRKFKPWPRPQIQRKPGVSSSSETSKDKTEEH
                     QASKGTKDEATKETTDKLKDEPEKHPESSCKRQSSIQHLANTVQLPNLAEASGKPEAV
                     AGSETSEEQQCTSSPKSTNILPPIM"
ORIGIN      
        1 ctgagggtaa gtcctaaacc cctgcagcga tccctgtctg tgacagccgg atgcagctcc
       61 tcccacttcc tgccctcacc tggacagaga ctaaaatgga tacgaacaag gcaaggaaac
      121 gtagtttgac aaccttccca gttttgaaag caagaaagaa gcagagtttc acctccgtga
      181 agggtcccac tcttcctcct gatatctaca tggttgagag taagcctttg gttcaactcc
      241 agaagccatc ctccaagacc aagaagctga gatcaaaccg atgttcacaa aagaatccaa
      301 gtaccagcag cagtgcattc ccttttgtgg acacaaaggg gaagaagaac acagttaact
      361 tcccccacat tggcaacaaa accctaccaa aggggtccac attgtatcag gaaaatcaga
      421 ttcataatca actgctgtcc tctgaactca agacctcaga aatacctttt agctttagca
      481 ccaaagccca agacaccaaa gtccaagaca ccaagctcca tccagaacta ccaaagaggc
      541 acaaagtccc tcttacagca gcagaggccc taaagttttt taagaatcag ctgtcccctt
      601 atgaacaaag cgaaatcctg ggctactcgg agctgtggtt cctagggctt gatgccaaga
      661 agctcaacgt ggttccggag aagttcagca agacaagctt tgatgacgag cacggttcct
      721 atgtcaaggt cctgcatgac cacattgcct accgatacga ggttctggat atgatcggga
      781 aagggtcctt tggacaggtg gccaagtgct tggatcacaa aaacaatgag ttggtggccc
      841 tgaaaatcat aaggaacaaa aagagatttc accatcaggc tctggtggag ctgaagatcc
      901 tggaggccct cagaagaaag gacaaagaca acacccacaa cgtagtccac atgaaggact
      961 tcttctactt ccggaatcac ctctgtatca cctttgaact cctgggaatc aacctgtatg
     1021 agttgatgaa gaataacagc tttcaaggct tcagtctgtc catagttcgg cgcttcaccc
     1081 tttctgtttt gaaatgctta caaatgcttt atgtagagaa aatcatccac tgtgacctca
     1141 agccggaaaa tattgtgctg taccaccggg gccaagtcac tgttaaagtt attgactttg
     1201 ggtcaagctg ctatgaacac cagaaagttt atacatacat ccaaagccgg ttctaccgat
     1261 cccccgaggt gattctgggc cacccctata acatggccat tgatatgtgg agcctgggct
     1321 gtatcatggc tgagctgtac accggatacc cactgttccc tggggagaac gaggtggagc
     1381 agctggcttg catcatggag gtgctgggcc tgccacctac ccacctcatc cagacagcca
     1441 ccagaagaca gatattcttc gattccaaag gtcttcccaa aaatataacc aacaacagag
     1501 gggaaaaaag atacccgaat tccaaggacc tcccgatggt ggtgaaaacc tatgactcca
     1561 gcttcctgga ctttctcaga aggtgtttgg tgtgggagcc ttctctgcgc atgacccctg
     1621 accaggccct caagcatgcc tggattcacg agccgaggaa attcaaacca tggcccaggc
     1681 ctcagatcca aaggaagcct ggtgtgagta gctcctctga gacaagcaag gacaagactg
     1741 aagagcacca ggccagcaaa ggcacaaaag atgaggccac caaagaaact acagacaagt
     1801 tgaaagatga gcctgagaag caccctgaga gttcgtgcaa acggcagagc tctatccagc
     1861 acttagccaa cacagtccag ctgcctaatc tagcagaagc ttctggaaag ccagaggctg
     1921 ttgctgggtc agagacgtcc gaagaacaac aatgcacctc ctcccccaag agcacaaaca
     1981 ttttaccacc catcatgtga cccttgtgga gggcgtgtcc tgtccctcca gccccaccat
     2041 cgatttgtat tagagaaggc actttgtaca atac
//
