LOCUS       NM_001135030            1606 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus dynein light chain Tctex-type family member 5
            (Dynlt5), transcript variant 1, mRNA.
ACCESSION   NM_001135030 XM_001063024 XM_342873
VERSION     NM_001135030.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jan 6, 2023 this sequence version replaced NM_001135030.1.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.28681.1,
                                           SRR26360181.3382785.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               JAXUCZ010000005.1  122971573-122971774
            203-320             JAXUCZ010000005.1  122973565-122973682
            321-412             JAXUCZ010000005.1  122977767-122977858
            413-537             JAXUCZ010000005.1  122984545-122984669
            538-1606            JAXUCZ010000005.1  122986236-122987304
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..1606
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /note="dynein light chain Tctex-type family member 5"
                     /db_xref="GeneID:362553"
                     /db_xref="RGD:1311932"
     exon            1..202
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            203..320
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..741
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Tctex1 domain containing 1; dynein light chain Tctex-type
                     5; tctex1 domain-containing protein 1"
                     /codon_start=1
                     /product="dynein light chain Tctex-type 5 isoform 1"
                     /protein_id="NP_001128502.1"
                     /db_xref="GeneID:362553"
                     /db_xref="RGD:1311932"
                     /translation="MAQRHGSRQQTRRLEQGAESLHREPQAQGRENNVSVCTVSHSDE
                     PSHHDESSGLQVRMENTYQLGPTKPFPVATVNRILEDVLTTYLQEAKYDPEFCRQMTK
                     TISEVIKTQVKQLMIPRYKLIVTVYIGQRDDQSIVIGSRCLWNPKSDTVSSYTFKNPT
                     LFALANVYAVYFE"
     exon            321..412
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            413..537
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
     exon            538..1606
                     /gene="Dynlt5"
                     /gene_synonym="RGD1311932; Tctex1d1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgtggctt agaaaccttg cctccttcag gccctgcaag agaagtttat ggtctggcct
       61 tgcccttcag ctcccttcct ctccgatgag cagtcgccca caacatcaag agctggccct
      121 actgatcaca cccataactg atctgtcaat ctcccgttct aggttgactt ccatcaggcc
      181 agggctagac ttttcacaag agggaggtaa ataaccatca tggcacagag gcatgggagc
      241 aggcagcaga cacggcggct ggagcagggt gctgagagct tacatcgtga accacaagca
      301 caaggcagag agaacaacgt ttctgtctgt acagtgtccc actcggatga gcccagccat
      361 cacgatgagt cctctggcct tcaagtccgg atggaaaaca cctaccaatt aggtcccacc
      421 aaacctttcc ccgtggccac tgtcaatcgt attttggaag atgtactaac tacctatcta
      481 caagaagcaa agtatgaccc ggagttttgc agacaaatga ctaaaacaat ttctgaggtt
      541 attaagaccc aggtcaagca gttaatgatt ccgcggtata aactaattgt gaccgtttac
      601 atcggacagc gggatgatca gagcatagtt attggcagca gatgcctctg gaatcctaaa
      661 agtgacaccg tctcatccta tactttcaaa aatcctactc tctttgccct tgcaaatgtc
      721 tatgcagttt actttgagtg actgaaaaaa cggtccacgt gtcccgaaat catgaaacag
      781 gctgggtgtc tctatccaca aaagttctac tggcaaaagc tgtgggaaag agacaggatg
      841 aagatttcaa aggactggaa gcttccatca cgcttgtgag gactggcgga gggggagggg
      901 agcctaagaa aacagtcttg tttgttcaaa gcagaagtca gtgcggttca cataaacaaa
      961 aacgccagct aaatatcgct ttgggtgcta atttttattt ctcttttagt tggagagctg
     1021 gaattccctg gaccactttt tgataaagct ctagaaatat atggcaacat actctggata
     1081 tatatcgtat aggataggat aattcaatga cacacaaaaa tggcaaatgt taataggttt
     1141 cagtgctgca tataaaataa tactggtttt cattttacat ttaataaatt gagtggcatt
     1201 cattagctgc aactgctgtt ccatgtacct gacagttgaa agtgctgaca tagaattaat
     1261 gatttcataa taattaccat ggtcccatgg ggccactggc taaatctaga tgctcttgtg
     1321 ggttgtctgc actttacaaa attacaagag aactgaacat tggctcttca ataatggaaa
     1381 ctataaagtg gatacaggct tttaaggaca ctaaagtagg cattgtgcta ttaaatatac
     1441 atgatgctta atactaaatg cgcccatagc acctaatatc atacatcagg aagagacact
     1501 acctttaaat acacagtgcc catgtgcttt tgactagttc ttcctgacct accttttacc
     1561 cagaacacaa agctggcagc ttaacaaata aaacatgtgt gtttgc
//
